Array 1 7371-4645 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMOS010000528.1 Rahnella sp. SL6 NODE_119_length_14981_cov_20.202908, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7370 28 100.0 32 ............................ TGTCACGCAGTTCCGAGCTAATCCCCATTTCC 7310 28 100.0 32 ............................ CGTTGAATAAACTCCGCCACTGCCATTTTAAT 7250 28 100.0 32 ............................ AGTCAGCTTGCACATCTCTTTTAAGCCTATGT 7190 28 100.0 32 ............................ TGGCGATTGAAATCATAGAAACGCAAATCAAG 7130 28 100.0 32 ............................ ACCACCCCCGGAAACCATCACAGCACAAATCG 7070 28 100.0 32 ............................ TAATGCACGCCGCAAAGAAAAGCTTATCCCCT 7010 28 100.0 32 ............................ AACATAAAAGGGCTTGAGCGTTCTGCTGCGAG 6950 28 100.0 32 ............................ CGCACATCAACCCACAGGCGGCGGCACGGGAC 6890 28 100.0 32 ............................ AAGTAGTGTGGATACTAAAAAAGGCAGCACAA 6830 28 100.0 32 ............................ ATGAACGCACCGGCCATGTGCGCTGCGGTATT 6770 28 100.0 32 ............................ GGGTACTTGATTGTGCGAGTGCCTTGAATCCA 6710 28 100.0 33 ............................ ACCGGTGTGGGCCGGCGCCCACGACCTTGACTT 6649 28 100.0 32 ............................ ATGCCTATCAGAGAGACAACCGAACATCGGAG 6589 28 100.0 32 ............................ GAAAGTAGGGAGTGAATAATGCAGAAAATGGA 6529 28 100.0 32 ............................ ACAAACAAATCTGCGAACTGTTTGGCCGCGCT 6469 28 100.0 32 ............................ GATAATAATCAGTGCTATTTTGCTGAGTGTAG 6409 28 96.4 32 ...........C................ ATATTGATGGCGGCGGACGGTTTCGAGACGTT 6349 28 96.4 32 ...........C................ CTGCCCGTGCCTCACATGGTGAATTTCTGCCG 6289 28 96.4 32 ...........C................ GGCATCTACGCCTTTTTCGTATGCGCGCGTTC 6229 28 96.4 32 ...........C................ TCAATATGCTGGCCGTTCGCCCGGGTGAAGTT 6169 28 100.0 32 ............................ GAATACATACCCAGAGTTTCATCTGTATGACG 6109 28 100.0 32 ............................ GGCGTTATTGCCATTGCCGGATTTTGCGCAAG 6049 28 100.0 32 ............................ CAGCGCCGCAACTTTATCAACGTGCGCTTGTT 5989 28 100.0 32 ............................ ACCGTATGTCCCGTGGGGTGAATGGTGCGAAA 5929 28 100.0 32 ............................ GCGAACGGAATAAAGACAGGATCCGGTATTAG 5869 28 100.0 32 ............................ GTCAGCGGCACTCAGGAAGTCATCTGCAATAT 5809 28 100.0 32 ............................ GCCCCGCAAAAGCCGGTCGTGTTGCCGGAAGG 5749 28 100.0 32 ............................ CCACTCAAAGTTCAACACAAGGTAAATGGGGA 5689 28 100.0 32 ............................ TTACCGCAATTCAGGCCGCGTGGATAAAATCA 5629 28 96.4 32 ...........C................ CACCAGGACACCGGCATCGAGCGTCGTTCCCC 5569 28 96.4 32 ...........C................ CGTGAAACCGCCATAAACAGCAGGACAGATGG 5509 28 96.4 32 ...........C................ ACAATCACAGACCACCGGCGCTGGACGTGTAA 5449 28 100.0 32 ............................ TTGATTAATTTCAGCAGCGCCGCCAGTTCATC 5389 28 100.0 32 ............................ GCTACACGCTGGTTAAGGTTCATCACGAAAAG 5329 28 100.0 32 ............................ TGGTGGGTGCAATCACGACAGGCTTTTGCGGG 5269 28 100.0 32 ............................ GGAATAAGTGAACCGTTGAGATGAATGAACGC 5209 28 100.0 33 ............................ CTTTAAAGCGGAGGAAACCGATCCTCTCTTCTC 5148 28 100.0 32 ............................ AATGAGGGAACCAATAAGATGTTGGATGATGA 5088 28 100.0 28 ............................ AAAAATATTTCCACGGTGTTAGCGCGGA 5032 28 100.0 32 ............................ CGGATCCGCATTGCCAATCAAACCATTTCCAT 4972 28 100.0 32 ............................ ACCAGTGCGGATACATGGCGGTTGATTGATAC 4912 28 100.0 32 ............................ TTTTAAACTCTCATCGCTAAGGCGTTCCATCT 4852 28 100.0 32 ............................ ATGCAAAGAGCTTTTCGAAAGCAGAAAAGAGG 4792 28 100.0 32 ............................ AGATACGCGCTGGATCAACTCGCGGTTGCGGT 4732 28 100.0 32 ............................ GCGTAGTCACCCGGGATGGCTTGTACATTCCA 4672 27 75.0 0 ............T.T..T.A-.G.C... | C [4647] ========== ====== ====== ====== ============================ ================================= ================== 46 28 98.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGACAGAAAGATAAAAGAGATTATCGCGTTTATCCTGTGGGAACGTTTCGAAATGCTGCGCTGCTCGCTGTATGCCTCCACGGAGGAAGCCGCATGAACAAAGACTGGCATCAGGCCGATATTATTGCGGCCATTAAAAAGAAGGGCACCACGATGGCGGCAGTTTCACGCCGTGCGGGGTTGTGTTCCTCAACGCTTTCGAATGCGCTGACCCGCAAATGGCCGAAAGGTGAAAGGCTGATCGCCGAAGCCATCGGCGTAAAAGCCGAAACCATCTGGCCGAGCCGCTACACCGAAATAACATACAACTGAGATCAGCTCCCTCCCCTGCAAAGGGGAGGGTTGGGGTATTAATGGCATCTGCGAACTAACCCTCTTTTTTGCACTTTCGCTAACCCATTGATTTTACTTAATCACTCAGATCATCAAAAAAAGAGGGTATTTTTGCCCAAACAGGCATAATCTTTTGCAGTTCAAAGGATAAACCTGAAAACGCAACA # Right flank : TACGTTGCAATTAATAAATTGCTCAGCAACTTAATGAATGGGATATATATCACATCAGTGAGAGGTTTAAATATGGCACCCTGTTTTAGGTGTTTTATTAAGCTGAAAAGATAAAAGCAGATGTTATGTTTTTATGAAGCTACTCCCGTTATATTGCAACATCAAATCAACAATGCCTGAAAGCGGTAATTCCATTATTGATATTTACCCTGGTGGCGTTATTTTTATACATGAATTTTGATTAAATCAGGGAATGATAACCAGATGGCTAACGCATTGATGCCTGGCGAGTTAAAAACGATTCTGCATTCTAAACGGTCAAATATTTATTACCTGCAATATTGCCGTGTATTAGTGAATGGCGGGCGGGTTGAATATGTGACGGAAGAAGGCAGGCAGTCATTGTACTGGAATATCCCTATCGCCAATACCACGGTAGTGATGCTGGGAACCGGCACGTCAGTGACACAGGCGGCGATGCGTGAATTTGCCCGTGCGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //