Array 1 2712409-2713229 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046404.1 Pseudomonas aeruginosa strain SE5416 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2712409 29 100.0 32 ............................. CTGTTGTCGTATCCGGCGCTTCCGCTATCGAG 2712470 29 100.0 32 ............................. CGCGCCTCCGGGAAGCCGGCCGGCGCGTTGAT 2712531 29 100.0 32 ............................. CGGCAGTGACGACGCTGGCAACGCTGGTTGGG 2712592 29 96.6 32 ............................A TGGCCCGGCGCGTCAGCTTGAAGGTGGCCAGC 2712653 29 100.0 32 ............................. CTGGGTAGTGGCGGTGGCAGCGCTCCGAGCGA 2712714 29 100.0 32 ............................. ACAGTCACGCGGCGAGTGATGAAGCCGCAACC 2712775 29 100.0 32 ............................. GAGTCGAGGGCGCGACCATTGCGCTGGACGTG 2712836 29 100.0 32 ............................. GCCCCGGCGGGACGTCTTGGCGCCCTCCTTTA 2712897 29 100.0 32 ............................. TCGTTGTAAGTCGTGACCCCGAAAGAGATCAC 2712958 29 100.0 32 ............................. TAGTCCTGGCGGATATCGCTGCACCAGTGCAT 2713019 29 100.0 32 ............................. CCTGCATCAGATGCGGCCTCCTTCACGCGGGC 2713080 29 100.0 30 ............................. ATGGAAGACCCAACCCGCGGCCAGGGGTGG G [2713091] 2713140 29 86.2 32 .G............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 2713201 28 79.3 0 A..........A..C..-.....A....T | C [2713205] ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.3 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGGGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGTTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2722403-2723775 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046404.1 Pseudomonas aeruginosa strain SE5416 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2722403 29 100.0 32 ............................. ATGGCATAGTCAATTTGCAGGACTTTGCGGAG 2722464 29 100.0 32 ............................. CTTTGATCGTATACCCGTTATATACCGCCCAA 2722525 29 96.6 32 ............................A CCATTCCCTTCTGGGCCATGGAAGCGACCGGC 2722586 29 100.0 32 ............................. GATAGACACCTTCCGATGTGCATGTTTCAGCG 2722647 29 100.0 32 ............................. CCATCGACCTTGCAGTCGAGGCGCTTGAGACC 2722708 29 100.0 32 ............................. GCGGTAGCGAACACCGCCGACGCTTACCAGGC 2722769 29 96.6 33 ............................A GCGGATCCGCGCCCTCGGCTATATCGTCGAGAA 2722831 29 100.0 32 ............................. CAGTTTCTGGTCGGCCCGCTTGGCCCAGGCAT 2722892 29 100.0 32 ............................. CCGCGACGCCGGTCCCTACCGCCCGCCATTCG 2722953 29 100.0 32 ............................. GCAAGTCGCCGTTCGATGGCGACCAGGTCTGG 2723014 29 100.0 32 ............................. GAGGCAGGAGGAGGCGAGGACGAAGGAGCAGG 2723075 29 100.0 33 ............................. GCAGACCGGGTTCCCCTACGCGCCGGTGTTTTC 2723137 29 100.0 32 ............................. CCTGATGAAATCGCCAAGGCCATTGGCATGAC 2723198 29 100.0 32 ............................. GAAGTGCCTCAAGCCTGGATCGACGTGCAGGC 2723259 29 100.0 32 ............................. GTGCCCGAACAGGTCATGGCGGCGCTGCTTGG 2723320 29 100.0 32 ............................. CACGGCTTCTCCATCAGCTTCCGCATGCCGCG 2723381 29 100.0 32 ............................. ACCTTCACCGTCGGCGAGTTCGTCGTGATCGG 2723442 29 96.6 32 .............C............... ACGAATGGGATGCAGTGCCCTTCGTCATAGTC 2723503 29 100.0 32 ............................. ATCGGCGCGCTGATGCAGCAGATAGTCGACTT 2723564 29 100.0 32 ............................. ATCGCGGAGAGAAGGGCCTGGTCGAGACGGTA 2723625 29 100.0 32 ............................. TCGCCGGTGCGGCCGTGGGGTTACGAGCGGCC 2723686 29 100.0 32 ............................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 2723747 29 96.6 0 ........T.................... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.4 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGTCGGGTCAACCGGAACGTCGATCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //