Array 1 36527-37334 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQKL010000025.1 Pseudomonas aeruginosa strain ZYPA25 NODE_25_length_80267_cov_28.963371_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36527 28 100.0 32 ............................ TTCCGCGAGAAATATGGCCGCAGATCCCGCGA 36587 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 36647 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 36707 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 36767 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 36827 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 36887 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 36947 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 37007 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 37067 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 37127 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 37187 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 37247 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 37307 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 97.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 47269-45859 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQKL010000025.1 Pseudomonas aeruginosa strain ZYPA25 NODE_25_length_80267_cov_28.963371_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 47268 28 100.0 33 ............................ CTCGAAGGGTTGCAGGGTGAAGGCAAGTCGACT 47207 28 100.0 32 ............................ TTGATGGGTTCGTACTCAGGCCCGGAGAACTC 47147 28 100.0 32 ............................ GGCACAGCTTCGCGGCGGCGCGGCGGAATCGG 47087 28 100.0 32 ............................ AACAGGCCGTCGGTGAAGCCGCCGACCTCCAC 47027 28 100.0 32 ............................ AGTATCTGCCGGAATGTCCAGCAGCGTGCGCC 46967 28 100.0 32 ............................ ACGCCTCATCCATCCAGTAGATGAAGCGCCGG 46907 28 100.0 32 ............................ AGGTGCTCATCATCGAGCACGCGGGAAATGTC 46847 28 100.0 32 ............................ ATCCCCACCGTCTCCACCATCGCCCGGATCAG 46787 28 100.0 32 ............................ TGGGCATCAAGGTCGAGCGCAACCTCGAACAA 46727 28 100.0 32 ............................ TTCGTCTGCGCCCTGGTGGTCATTCCTCTCAG 46667 28 100.0 32 ............................ AGAAGCCGTAACCGGCAGCAGCGCGGGCTTCG 46607 28 100.0 32 ............................ AGCAGCCTGGACCTGGTTCGGCCCGTCCAGGC 46547 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 46487 28 100.0 32 ............................ AGTCCGTCAGTTGACCCGGCGACGGCGATTGA 46427 28 100.0 32 ............................ ACCAGATCGGGAACCCTGGGCGACATATCACC 46367 28 100.0 32 ............................ TGGTTCAGGATGCGAGCGCGGACCCGACAGTT 46307 28 100.0 32 ............................ AGGATGAACAGGTACAGCAGTCCGCCGAAGAG 46247 28 100.0 32 ............................ GCGATCCACGGCATCAGCCACGAACAGGCGAT 46187 28 100.0 32 ............................ AACAGCGCGGGAGTGGCGCGCTCGATCGGCAA 46127 28 100.0 33 ............................ AGGGACGTCGCGGGCCAGACCTACGAACTGTTT 46066 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 46006 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 45946 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 45886 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //