Array 1 554430-554664 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDQZ01000002.1 Enterococcus faecalis strain C34 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 554430 37 97.3 29 ....................................G AACCTCCGCTCTTCTTATTGATACGTTTT 554496 37 100.0 29 ..................................... ATACACCAATAAAAGAACGCGCTCGGGAC 554562 37 100.0 29 ..................................... GGGTTGACTAAAGAGCCGTCAAAAGTTTT 554628 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 4 37 99.3 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : TGTATATCCTCATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAGGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTCGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCTCAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTATAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAATTCAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : TCAAGAAATTGCATTAAGTTCAAAAAATTTGTTTTAGAGCCATGTTGTTAAAAAACAAACTATCACCACAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCGATTTTCGAAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGGAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 174446-174014 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDQZ01000003.1 Enterococcus faecalis strain C34 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 174445 37 97.3 29 ....................................A AGTAATGAGTTCCGCAAGTTTCGCTATCC 174379 37 97.3 29 ....................................C GCTTGAAAATATTCTATGAACCAATACGT 174313 37 100.0 29 ..................................... GGATTTGAGACTGCGTATAATTGTGAGTA 174247 37 100.0 29 ..................................... TCAAGATTATTTGTGAAGGCGGATTAGAG 174181 37 97.3 29 ....................................G TAAATTTCTAGTGAGCGTTTTTGGTTTTC 174115 37 97.3 29 ..........................A.......... TAAACGTTCTATTCCCATTCGTTCCGACT 174049 35 81.1 0 ......................TT.--.CG......G | T [174017] ========== ====== ====== ====== ===================================== ============================= ================== 7 37 95.8 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : ATGGCGTGTTTAAAGACTTAATTAATAAAAGATATGTGGTTACTTTATTTATTGAGTTAGAGGAAGGCGAAGATTTTCAGTATCCAGTAGAAGATATTTTAGATAGGTACTATGTGAATTGTACAGATTACATTTTTGAGAATGAGCAAGACAGAACGATGGTAGTTGAAATTGAAGATGGTAACGATGACAATTTTGATAGTTTAAAAACGATTCAGGAAATTGCGGGTTTAATGGGAAAGAGGGTATACAACCAAGAAGAAGGAGAATATTTAATTCTTAAAATAGAATAACAGTGAAGTTTTATTTTTTTCTTTCTCAAGATTTAAAATATTTTTCTATTTATTTGAACAAAAAACGGCTCTTTGTCAAATAATGTTGGTAAAGAGAAAGTTTGGTATAATGAAAGAGTAGAAACAAATCAATACATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACAGAACTTTGGAGAAAAAATAATTCTCCGAG # Right flank : ATATGATTGATGTAAAAATATCATTGATATGTATAAATATGGTTATTATATAAAAAATATAAGTAACGAATTAAAGCTTTGCTAGAGCAAGTGATGCGATTACGAAATTATTTAATTTTAGAGTCACGTTATTTATTACTTTATGAATAGAGAGTACGATTAGTTAAATATTTAGTTTTACAGCTATGTTGTTATTATATGTGTTGAACGAAGTTATTGATTTTAAAAGTAGTTGTTCCTCCTTTTTTTATATGCTACAATTTTTCTATATTAATTATTAGTTAAATATTTAAGGAGGTGATTATAATAAGAAGGAAAGGATTTAACAAAATAAAAAAAGAAATGGAATATGTTAAAGTAGTTACGGATTTACTAATGGTATCAAAATTTTTTACGCTACAGTCCGATGAAGATTTACATACATTAACTCTGTTTGGAACATTACTTATTTATATTTATAGACGCTCTGTAATGAATGCGTTTTCTACGAAACTGGATAA # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 177968-178136 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDQZ01000003.1 Enterococcus faecalis strain C34 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 177968 37 64.9 29 C..C.TCATT.GAAGAT.................... AATAATTATAACATAAATTCAAAATATCC 178034 37 97.3 29 ....................................T CTGTTGACGTGATAAACAATCGTTTGTCT 178100 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 3 37 87.4 30 GTTTTGGTACCATTCTAAACAACATGACTCTAAAACC # Left flank : CTCTACATAAGATATCTTCCTGTTCTTCTACTTGGGCAATTTTTCTTGTAATTGTCGCACGTAATTCATCGTTTCTCTCTTTTTCACTCATACTTAACGCCCACCTCCTCGGAATTGTTCCGCAGATTGTTGATCACGATAAGCAATTTTTTCTGCAATTTGTGGGAATTTCTCGGCTTGCTTCCAAACACAATTGGCTAAATCTGTTAAGTTTGTTAAAACTTGAGCATTTACTTGTTTGCCTTTGGTCATTCCTGAAACTGTACTTCCTGAAAAGGTTACCTTTGGGGCTTCTAAACGCTCGTTGATACCAGTCAACTTTGAGACAGCACTTTGGGCTGAACTCGTACTTGAAACAATCTTTCCTTCCATCATTGTTCTCCTTTATTAAATTTATTTCACTTAAAATTTAAGATACTTTCATTTTACTAAACTTTTTTAATGAAAGAAATAAAAATAACAAAAAAGGCTACTGGAAACAGTAACCTTTTAGCACTCCT # Right flank : CTCGGAGAATTATTTTTTTCCAAAGTTCCGTACTCGCATCACTTATCCATAGCTAGATTTCAGTTTAGAATGAACCACTAATCAGTAACAATTTAAGCTTTTTCATAACTCAAATAAAAGTTTTCGTCCAAAATATATTGGAATCTGTTCTGGACCACCCTTTGTTCTAAAAACAGGACATCCACATTATTTAAAGAGATATATTCTACCACTTGTTGCACTTCATCCTCTGTCAAATACGTACACGCATTAATAAAAATCAATAATTTTTTCTTTGATAAATAACGATGTACTTGTGTAATTTCCATAACTTTTTCAAAAATCGTATCACTCGTTGTTTCGATTTTGATTCCAAGAGCTTTGAAAAGTTCCTGCACAGTGATGCCATCTTCTTCCAAATCCATTTCATGTTCCAACAATTCATAGCCAATTAATTGACTAATTGTTCCAGTTAACTTCTCAATCATTGATTTGACTTCTGGTTTATCATTTAATTGTGC # Questionable array : NO Score: 3.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.37, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGTACCATTCTAAACAACATGACTCTAAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: F [matched GTTTTGGTACCATTCTAAACAACATGACTCTAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //