Array 1 252352-250454 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYUT01000002.1 Salmonella enterica strain BCW_6499 NODE_2_length_298516_cov_4.42558, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 252351 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 252290 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 252229 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 252168 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 252106 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 252045 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 251984 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 251923 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 251862 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 251801 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 251740 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 251679 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 251618 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 251557 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 251496 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 251435 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 251374 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 251313 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 251252 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 251191 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 251133 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 251072 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 251011 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 250950 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 250889 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 250828 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 250767 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 250706 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 250605 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 250544 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 250483 29 93.1 0 A...........T................ | A [250456] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 270250-268634 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYUT01000002.1 Salmonella enterica strain BCW_6499 NODE_2_length_298516_cov_4.42558, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 270249 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 270187 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 270126 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 270065 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 270004 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 269943 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 269882 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 269821 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 269760 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 269699 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 269638 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 269577 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 269516 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 269455 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 269394 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 269333 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 269272 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 269211 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 269149 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 269088 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 269027 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 268966 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 268905 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 268844 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 268783 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 268722 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 268661 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //