Array 1 1526035-1529724 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020468.1 Actinomyces gaoshouyii strain pika_114 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1526035 28 100.0 33 ............................ CCCCGTCAACGCGCTGCGTAGCGGGGCGCCCCA 1526096 28 100.0 34 ............................ GCGGGGTTCGTCGGCTCCAAGCCTGACCGGTGGA 1526158 28 100.0 33 ............................ CGGCTTGGATTCCGCTGAAGCGGCAGTACCAGG 1526219 28 100.0 34 ............................ CCTGGGCGTGCACCCACATGGCCGGTCGATCGGG 1526281 28 100.0 33 ............................ GGTGGCGTCATCCGGCAGAGTGCTCGTGCCGAG 1526342 28 100.0 33 ............................ TCTGAATCAGATTGCCTCGATTAAGCCAAAGGC 1526403 28 100.0 33 ............................ GCCAGACGCTCGTACTGGTCCCCGCTATCGAGC 1526464 28 100.0 33 ............................ CTCCCAAGCCCGCCAACCTCATGAGATACCTCA 1526525 28 100.0 33 ............................ CCAATCGCTGGATGCGTCACCCTTGCATGCGGC 1526586 28 100.0 33 ............................ GCCACAGCGACGGAGCATCAGGCCCAGTTACCA 1526647 28 100.0 33 ............................ GCGCGCCATCGTGCTGGGCATGTCTATGCGAGC 1526708 28 100.0 33 ............................ CGTAGGCGGTGATCGCCCGGTGTGAGAGGCCAG 1526769 28 100.0 33 ............................ ATCCTCGGGCGTGTAGATCAGGCCGGCGAGGGC 1526830 28 100.0 33 ............................ TATCGGTGCGGATATCCGAAAGAGCGCTCAGTT 1526891 28 100.0 33 ............................ GAGGGATGAGGCGGTCGCCCAGTGTGTCGCCAG 1526952 28 100.0 33 ............................ GCCACAATCGAGGATACGCAAAAAGCCGGGAAA 1527013 28 100.0 33 ............................ GGTCACTGGTCATGGGGTGACGCGCGCCGCACG 1527074 28 100.0 33 ............................ CATCGCCTGCCGACTGCTGAGCCCGTTGGCCGC 1527135 28 100.0 33 ............................ GATATCGAGGAGTGCGGTGATTTTCGGAGAGCG 1527196 28 100.0 33 ............................ GAGGCAGACCTCCTCGCGGGCGTGCAGGATGAT 1527257 28 100.0 33 ............................ CTCACTTTTTTCCAGCGCCCTGGCCCGAGCGGC 1527318 28 100.0 33 ............................ GCAACTTGATCTCTTCGACACGGAACTCGCCTC 1527379 28 100.0 33 ............................ GGCGTTCTCCGGCCTGAGCGGGATTCTGGGGGC 1527440 28 100.0 33 ............................ GAGCATTATCGTCCCCACAGATGAGGGATGGAC 1527501 28 100.0 33 ............................ TGACATTCATTCCCGGCAAGGGGATAAGAAAAT 1527562 28 100.0 33 ............................ CAACCCAACCAGAGCCTCGACGACATGATCGCT 1527623 28 100.0 33 ............................ GACGGATTGGCGGGCCACGTGGCGCAACTGGAT 1527684 28 100.0 33 ............................ TCCTCGACGGCGCCATCCGCTCCGGCAAAACCT 1527745 28 100.0 33 ............................ TACGCATCTCGGTTGACGCGCTGTCTAGGGTCA 1527806 28 100.0 33 ............................ GCTTCGGGACCAGTACCGCCAGCTTTCCACTGA 1527867 28 100.0 33 ............................ CACGCCGGGCATGCTTGCCCTCGCGCAGCGCCC 1527928 28 100.0 33 ............................ GATGGGCGGCGGCACGAATGTCGGGCTGGAGGA 1527989 28 100.0 33 ............................ GTGAGAGTCCCATGAGCCTCACCGACCTGATCC 1528050 28 100.0 33 ............................ CGCCCCCGCAGCCCCCGGCGGTAGGGGGGTCGC 1528111 28 100.0 33 ............................ CAAGCTGCTCGGAGTCCGGATCGGTCCACTCCT 1528172 28 100.0 33 ............................ TCGTACCGTCGCCAGATAGCCCAGCTCCGGTAC 1528233 28 100.0 33 ............................ CGCCGCTAAAATGATCGGTGACGCCCTCGGCAA 1528294 28 100.0 33 ............................ GCGTCTTGGGGACCGACGCCCGCACCTGAGACA 1528355 28 100.0 33 ............................ CCGCGCCGAGTTCATCAAGCAGGCGCAGGCTAT 1528416 28 100.0 33 ............................ GTGGGTGACATCTCTCACACTCGGCGAGCATAG 1528477 28 100.0 33 ............................ GGCACCACCAACGAGGTCACCGCCTCGTGGGAC 1528538 28 100.0 33 ............................ CACGGAGTACACGGCCGACTCGTCCGAGAGCGA 1528599 28 100.0 33 ............................ GCACTTCGTCCAGGAGAACGGCTTCACTGTGGC 1528660 28 100.0 33 ............................ GCCGTGTGACCGGGATTACGTTACGGGGGCGTG 1528721 28 100.0 33 ............................ GGTGCTTTTTGCGATAAGTATTTCAAAAAAGTT 1528782 28 96.4 34 .........A.................. CGCCCCCGCAGCCCCCCGGCGGTAGGGGTGTAGC 1528844 28 100.0 33 ............................ CGTCTCGGGTGATGCGGTGACGGGTCAGCGGCG 1528905 28 100.0 33 ............................ GGACGCGGCCGTCCCCGGCGGCGGCAACAGCCT 1528966 28 100.0 33 ............................ GCCCCCGCAACCGCCCGGACGGCGGAAGCGGCG 1529027 28 100.0 33 ............................ GCCGCCACCGAGAGGGTGGCGCCATGACCGGCA 1529088 28 100.0 33 ............................ TAGCGAGTGGGTCTACGCGCTATTCAGCGGGGG 1529149 28 100.0 33 ............................ CCGGCGGCCAGCATCGCATCGGAGACCGCCACA 1529210 28 100.0 33 ............................ CGGCATCATGATCACTGTCGGATCATTGTTCAG 1529271 28 100.0 33 ............................ CGCCCCAGCTCGCTCACGAGCACGGTCGTCTCC 1529332 28 100.0 33 ............................ CGCGGGACGTAGCAGTGAAGATCACGCCAGCCG 1529393 28 100.0 33 ............................ GCTGATCGACGCGGCGAACGCGGCGATCAAGAC 1529454 28 100.0 33 ............................ GACCATGGACCTCGACGAGATCGAGGCCCCCCG 1529515 28 100.0 33 ............................ GAGAGAAGCTGACCGGCTCGACCAGGCCGCCTA 1529576 28 100.0 33 ............................ CTGACTCCGTGGTCCTCGGCGTCGAGGGCGCCT 1529637 28 100.0 33 ............................ CGCTTAAAACCAGGTCCCTCACGCTTCTGGCGT 1529698 27 89.3 0 .....-....T............A.... | ========== ====== ====== ====== ============================ ================================== ================== 61 28 99.8 33 GTGCACCCCGCGTATGCGGGGATGATCC # Left flank : CGTCTCCGGCGGGGCGAACTACGCCGCGATCGGAGTAGAGGAGGCAGGTGGATGGTAGTTCTGGTTCTCACCGCCGCTCCCGCGCAGTTGCGCGGCTCGCTCACGCGCTGGTTGATGGAGGTCTCCCCCGGAGTGTTCGTCGGGCATCTCGCCGCCCGAGTGCGCGAGCAACTATGGGACCTGGTCAGGGCGTATATCGGTGACGGTCGCGCACTCCTCATTTGGTCCACGCGGTCGGAGCAACATTTCTCTGTGGCCTCGCTCGGCCACGATCGGGAACCTGCGGATTTCGAGGGCTGCCTAGTGATGCGGACCCCGTACCGAGCAATCGAAGGATCGCAGGTGACCCCCGGAGCCGCGAGGCCGGCGAAGGAGTCGTGGTCCATTGCCGCTCGTCGACGCCGCTACAGGAACTCGGCGGAACGGGCTCTAGGTGGGGAGTGAAGGCAAAAGGTTTCAGATAGATTACAATGCCGTTGGGGTCTCAAGGATTGCCAAGT # Right flank : CCGAGCCAGAGCACGAGCGACACCTTAGCGGCCCGGACGCCTGGACTCATATATGGATGCGTGGTGGTCAACTGACGGCAGCCATGTCAATGACCAGGTTGACCTCCAGCGCACGAACGATGCGCCGGAGCATGAGAACTGAAATAACCCGGCCGCCGTTCTCGACGGCGAAGATGACTGACTGCCAGGAGCCTATGCAGTCGACCAACTCGGCCTGGGTCAGTCCGGCGCGCAAGCCGTGTGGACGCACCCGGCGAGCTGGAGGCGGATCCCCTCTTCGGCCTGGGTAACGTCAGAACAGGCCCGTTCGTCGGGACACGGCAGCCAGAGCCCCGAACTCGACCAGCCCCTGAGCAGTATCACCCTCATAATCACTCCGCCTCCCCTCTAGCTTACTTTTCCCTCGCCCTGCCGCCTGGGCCGTCGGCTCGACCCCACCTGGGCTCGACGGTGAAGCCGGGTCCAGCGACACCGGATCCGTCGGCGAGCTCGATGAGGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACCCCGCGTATGCGGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGAATGCGGGGATGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //