Array 1 24358-25894 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBR01000060.1 Nocardia salmonicida NBRC 13393, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 24358 29 100.0 32 ............................. GGGTCGACCTTGGCGGTTGTCGATCGGGAACG 24419 29 96.6 32 ........T.................... TAGAACGCGCCGACTACGCGGTGCTGTGGCTG 24480 29 96.6 32 ...C......................... CTGCGTAATTGGCTGCTCGGGTCGCTGGCGGT 24541 29 100.0 32 ............................. TGGTCCGACGACCCGTCGAAACCGGGTGTGCC 24602 29 96.6 32 ........T.................... CAGCGCTCCGGCGTGTTTTCGACCGCGAAGAA 24663 29 100.0 32 ............................. AAGCACACCATCGTCTCGCTGGACACCCTGTA 24724 29 100.0 32 ............................. TACATCGGCCGGTTGCTCATGGAACTGCTCAG 24785 29 100.0 32 ............................. CCACCTTCGCTTTGATGGCCGCCCAAACCGTC 24846 29 100.0 32 ............................. TGCTTCCAGCTCCGCGACACTGCGGCCCTGCA 24907 29 96.6 32 ............................A ACGATCCTCGACGTGATGGGCGCCATCGTCGT 24968 29 96.6 32 ......................A...... GGGGTGAACCTCAGTGTCGGCGTCCAGGTGGA 25029 29 93.1 32 .................A..........C TTCTCGACCCGGCCGAGCTGGGCCGGATCATG 25090 29 100.0 31 ............................. GTGATGTACGGCGGCCTCGCTGTCGGCGCCG 25150 29 96.6 32 .G........................... ACCAACGAGTTGGTCGAGGCGATCGAGACCGG 25211 29 100.0 32 ............................. TGGGTGAACTCCGCTCCCCTAATCGGCACGCG 25272 29 100.0 10 ............................. TCGGTGACGG Deletion [25311] 25311 29 93.1 32 ..................A.........C AGGGCGGCGTTGTACAGCATCTGGTAGTGGTA 25372 29 93.1 31 ......G.....................T GGGGTACGAGGGTCGTGGCGAAACTGTGCGG 25432 29 89.7 32 TG.T......................... ATCAAGAACGCCGGTCCAGAGGGTTCGATCGT 25493 29 96.6 32 ..............T.............. ATGTAGGCATTACTGCGGACACCAAGGCCCAC 25554 29 93.1 32 ..............T.........T.... ACGAACGACTTGGTAGAGGCGATCGAGACCGG 25615 29 89.7 32 ..CC.....................C... AACCGTCAGCAGAACAAGGAAGCGCCCCAGTC T [25630] 25677 29 86.2 32 A.C..........A.A............. CACCACGACGCAATCGCGCCGCTCGATCATCC 25738 29 75.9 32 C.C.....T.T.T........C...A... GTGAAGACGGCGCGGGTGGCGAGCAGGATCAG 25799 29 86.2 37 ..C..........GT.............C AGATAGCGGACAAGTACCCGACTCAGCTCGCGTCGGA T [25824] 25866 29 75.9 0 CCG......T.......A.......C.T. | ========== ====== ====== ====== ============================= ===================================== ================== 26 29 94.3 31 GTTGGCCCCGCACCCGCGGGGATGGTCCG # Left flank : CGCGGAATGGCGGATTCTGCTTATTGCCGGAGATGCCCCCCGTGCGGGCCGTCTGGGCGTCAGGCACCGGCGACAGCAACGCGATATCGCCATCACGGATCATCACCACCTGCGCTCGCCAAAGCTGTGCCACGACAGCGGGGCACCGACCGGCGGATATCGGCCCGCGCCGAGAATTTCCACATTCCTGCGCGGGAGTGAGTGGCAATGAGACGGCGGTCGCGGGTGTTGCCAGTGCGGCGATACCCATTGCCTCGAATTCAATCTCGTTATCCCGCTGAGTCGAGGTGACGGTACGGGCGTCGGAAACCTGCAGAGCTTGTGCCGTCGGCGCAATCTTGAGAATGGTTCGCGGATCTGACTGGATCTGGTCTCGTCGGCATGAGGTGCTAGCTTCCACTGTCCCTTCGCCAGCTCGGATGGGTAGAAACGAAGTGAATGAAATCAGGGTGGGTCGCTCGTGAACTTGCAGGTGAAGAAGTGTTGGCCCCGCAACGTGC # Right flank : GGCCGAACAGTGATACGGCCTCACCGTCTCGCCGGAGTTGTCGAGGCACGGTCGGCGCCGCCGCGAGCACGGTCTCGACTCCACCACCGGGATCACATGTGGTTTCCGTCTCCGCAACTGTGGTGATTGTGGCCAGGACTGTCGCGCGTGGGTTTATGTCGGTGGGTCCTCCTATTGTGCGGTTATGACGATTGCAGGGGAGAGGTTGGGGGACAACTGGTCTGGGCTGTCTGGGCAGGAGCAGGGCTGGTTGAGGTCGTTGTGGGGAAAGTCGGCCGGGCGTGCCGGTGGTACGACGAACTTGCTGTTGTCACATCTGCTCGATACTGCGGCGGTCGCTGAGTTAGTTTGGGATCGCTATCTGGCGGTCTCGATCCGGGACCGGGTTGCTGGGTTGGCTGGGGGTGTGGAGCAGGGGCGGCGGTTGTTCGTGTGGTTGTGTGGGGTGCACGATCTAGGGAAGGCAACGCCGGTTTTCCAGGCGGTGGACGGTGATGGTG # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGCCCCGCACCCGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGGCCCCGCACGCGCGGGGATGATCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-37] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 35558-39246 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBR01000060.1 Nocardia salmonicida NBRC 13393, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 35558 28 100.0 33 ............................ GACACTCAGTTGTCGCTGACCGAAGCCGCCGCC 35619 28 100.0 33 ............................ GCCGCGGATGAACTCGACGACGAGGTATGGACC 35680 28 100.0 33 ............................ GATCTGCGCCATACGGCCTACCTTCCTCCGGTC 35741 28 100.0 33 ............................ GTGATGGCGCGGCACGCGCGCCCCGAGGACCCG 35802 28 100.0 33 ............................ GGACTCGACCGCGCGCAAGGGCAACCCCGCACA 35863 28 100.0 33 ............................ TCTCATGCGACACGGCCTTTCACCTTCGCCGGA 35924 28 100.0 33 ............................ TACCACGTGCTCTACGTGAATACTCGCACGGGA 35985 28 100.0 33 ............................ TTGGCTATTGCATCGCTCCCGGAATACCACGTG 36046 28 100.0 33 ............................ TGGTCCTTCCGTCGAGGACGAGATCGTGCGCGA 36107 28 100.0 33 ............................ GATGGCCTAGGCGAGGGCCGACGTATCCCGCCC 36168 28 100.0 33 ............................ ACAAGGTGCTCCACCTCGGGCGAGTCATCGGCC 36229 28 100.0 33 ............................ CTCTGAAAGGTCGATTCCCCATGCCCAACATCG 36290 28 100.0 33 ............................ GCACGGCGCAAACAACCTGTTCGAATGGATCTC 36351 28 100.0 33 ............................ TGGTCTCGCGGGTCTCAGGGTCGGGTATCGCCC 36412 28 100.0 33 ............................ TGGCCTCTTCGCGCATGTCCTTGGCCATCGCGT 36473 28 100.0 33 ............................ TCCGGGCACGTTCACCGCCAGCGCTGCCACCAG 36534 28 100.0 33 ............................ TCAGGTTGGTGTCGGCGCGGTACCGGTACCGGT 36595 28 100.0 33 ............................ TGAGGCGCCGGGCAGTCGCAGCGCGTCCAGGAT 36656 28 100.0 33 ............................ GGCCAGCACCGTCTAGCCGAGGTCGGCCAGCGA 36717 28 100.0 33 ............................ TACCCGCACATCTTCGCGAGCGGCACAGTTGCC 36778 28 100.0 33 ............................ GGCGCAGCGCGACCGCTACCGGTCCTACATGCG 36839 28 100.0 33 ............................ GTTGCCGCCCGCAATGTCGTTGGCGCCCTGGAA 36900 28 96.4 33 ...C........................ CCGATCCAACTGCTTTCCGATAGTCACGAGTTA 36961 28 100.0 34 ............................ GTCCGGCCTGCTCTGGTCGATCGTCGCCGGGCTC 37023 28 100.0 33 ............................ GTTGAGGTCGCGTGCCGCTTTCTGGGCATCCTT 37084 28 100.0 33 ............................ GGCTGCGGCTGGCCCACACTGCCGGCGGAGCGG 37145 28 100.0 33 ............................ TTGATCGTCGATGTGCTGCTGGGCGCAGGATTG 37206 28 100.0 33 ............................ GTCACCATCAGCTCCAACGGCGAATTCAGCGAC 37267 28 100.0 33 ............................ TTCTTGGCGTGTCGGTCGGCGCGAATCATGCTG 37328 28 100.0 33 ............................ GTCCCCGGCCCGGACCGAACGTGCGATGTGGGC 37389 28 100.0 33 ............................ GTCAGCATCGACGGGGCGCTGATCGACTCCTCC 37450 28 100.0 33 ............................ GTCGATCGCCAACCCGCCGAGCCCGAACACAAC 37511 28 100.0 33 ............................ GTGGACGATCACCCGCGGCGAGTGGATCCTCCC 37572 28 100.0 33 ............................ TCGGCATCGTAGAACTTGATGCCGGACAGCCGG 37633 28 100.0 33 ............................ GCTGGACGACCAGCTGCGCAACGCGCGCGAGGA 37694 28 100.0 33 ............................ GCGAGTCGTCAAGGTGCTGCGCGCGATCTGGAA 37755 28 100.0 33 ............................ GCCCGGCACCCCGGCCCCGGAACCGGCCCGGCC 37816 28 96.4 33 .................A.......... GCCATTCGGCAGATCCACACGCGCCACGGTGGT 37877 28 100.0 33 ............................ GGTGCGGATGGTCGACCTCGAACCGCGGCACAT 37938 28 100.0 33 ............................ TGCGTCGAGTGTCGTCTTCAGCACGCAAGCATC 37999 28 96.4 33 .......................A.... TCCTCCGGCACCTGACCTCCAGCAGTACCTGGG 38060 28 100.0 33 ............................ GGCCGCGCAGGCTGCGACCGAGGATGTGACCCG 38121 28 100.0 33 ............................ TGATCCACCCCGAGAGTGACCCGAGCGGCGGGG 38182 28 100.0 33 ............................ GCCAGGGGCGCCGGGCGCGATCGGGTAGGCGAG 38243 28 100.0 33 ............................ GACCCGCGCCGTGAAATGGGTCGAGCGCCTGCG 38304 28 100.0 33 ............................ TCGCTACGCCATCCCCGGCACACCTCTTCCACC 38365 28 100.0 33 ............................ GTTGCTGGTGAGCTACCAGGACGGGCTGCGCAT 38426 28 100.0 33 ............................ GGCGATGGCCAAGCTCAGCCCGAATGCGAAGGA 38487 28 100.0 33 ............................ GAGGAGGAGACGTGCCACCCCGGACGATCTGGA 38548 28 100.0 33 ............................ GATCCCGATCGAGTCGAAACGCGCGATCACACC 38609 28 100.0 33 ............................ CTGCGTCGCGCTCGCGGCCGCCTCAACTGAGCT 38670 28 100.0 33 ............................ CAGCATCCTCGGCGTCGAACGCACCGGTATCTA 38731 28 100.0 33 ............................ TGGCCGACGCTCGGCGACATCGGCGAAGCCTGG 38792 28 100.0 33 ............................ GAAGCCGAGGATTTCGGGTTTGTGGGTGCTGAC 38853 28 100.0 33 ............................ GTGCGTGAGCTTCTGGCCGGTGAGGTGTCGATC 38914 28 100.0 33 ............................ GAACAACCCGGTCAGCAGGTCTTTGCCCTCGGG 38975 28 100.0 33 ............................ CCGCCGCTACTGACGACCCGACCCCGGACGTCG 39036 28 100.0 33 ............................ CCCACGATCGGGCACGCGGATTCGCTGCGCGAC 39097 28 100.0 33 ............................ GAAGACCGTCGATACCCTCAAAGGCTTTGGCCC 39158 28 100.0 33 ............................ GCCCTCACGACGCTGTCCAACATCGGCGTCCAC 39219 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 61 28 99.8 33 GTCGGCCCCGCACCTGCGGGGATGGTCC # Left flank : CTGACTTGGTTCAGCCCGGATTCGGCGATCAACACGTCACTGTCATCGGTCCCGAGGTCGAAACGCAAACTGAATGGTGAGCCCATGACCGTCATTGTTTTGATCGCTGTTGCACCAGGTCTGCGTGGCCATCTCACTCGGTGGATGGTCGAGGTCAACGCGGGTGTGTTCGTCGGCAATCCGAACCGCCGCATTCGTGATCGTCTCTGGGAGTTGCTCGCCGATCGAGTCGGCGATGGACAGGCGATCATGATCGAGCGTGCGACGAATGAACAAGGCTGGACTGTACGTACCGCGGGTCGGGACCGGTGGCGACCTGTCGACTTCGATGGGCTGATTCTCTCGGCCAGACGACGACAGTCATGAAATTGGATAGGCCAGGTCAGTACTGGCTGAGCGAGGCCCACTCATTGATTCCAGTGTCGGGCGGTGACTGTCACCGGCAAATCGAAGTGAATGAAAATGGTCCATATCGCACGGAAAACTGCAGGTGAAGAAGT # Right flank : GCGACATGCCGCCACTGTGGCTGCCTAACCCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCTGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34-672 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDBR01000061.1 Nocardia salmonicida NBRC 13393, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 34 28 96.4 33 T........................... TTCTGCGGGTCGATCGAGTGCGAACTACGGCCA 95 28 100.0 33 ............................ GATCGCGCCGTAGCGCTCGTGCGGGGTGCGGTC 156 28 100.0 33 ............................ GGCGAACAGGCACCGTTTTGCATCGCTTCGCAG 217 28 92.9 33 ............TT.............. GATGGTGGTCAGGGCGGGGGCGAGCGCGGTGAT 278 28 100.0 33 ............................ GCTGGGGACCGCGACACCGGCCGGGGTGAAACG 339 28 100.0 33 ............................ GCGTCGCGGCGGCCAGACCGCCGCGTGAGGTCT 400 28 100.0 33 ............................ GAGGGCGAGACCATCGTCGAGTCCCTCAACGAG 461 28 100.0 33 ............................ TGCGCGTAGCCGCACGCGGTGGTCTCGTCTCGA 522 28 96.4 33 .................A.......... GACATCCCACACCACCCAGAACACGACCGGCAC 583 28 96.4 33 .......T.................... TGGGCAGCCACCGCTCTTGTGCACAAGGAGTGA 644 28 85.7 0 .G............C....AA....... | G [667] ========== ====== ====== ====== ============================ ================================= ================== 11 28 97.1 33 GTCGGCCCCGCACCTGCGGGGATGGTCC # Left flank : GCCGCCGTCGACACCGCAGCCCCGAACGTCCTTT # Right flank : CTGCAATGGCGCGGGCCTGGTCTACACCGACCTGGTCGGCCTGCGACCGCTGTGTTGGTCCCAGGTTCGGTCCGGTGCTCGTGGCAAAGCGCAATGGCGGGGCTCCGACCCTGAGGCGTTGATCGCCCAGTTCGGAACCGCCCTGAATACGCTGCGAATCACTCGCCTGACGCCGTACACGATGCGCCACAACAATATTGGCGAGGCCGAATCTGTCGGAGATGGCTCTCTAGATCGGTGGCGCCACGCCACGCCGATGCGGACCGTCGTGTTGCGTGGGAAGCCGTGAGGGATGGGGCAGTATCTCGTGTGTCTTCGCTTCGCCCTGATCCGGCATTGCTGCCCTCGGCCGATGAGGTTCCATGTGCTTCGCAGCGGAATACGGAAGTCGTCGTCAGAAGCGCAGTTCTCGTATTGTGTTGAGGTTGATTCCGCGGCGTGCGTAGATCTTGATCGTGTTCTCGCCGGTGAGGTCCGCTTCGGTATAGCCGAGCAATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCTGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //