Array 1 16809-17301 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKXX01000070.1 Staphylococcus felis strain F18 k127_251, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16809 36 91.7 29 ...........G.......A...............T ATAAGCATGTGACTAAGAAAAGAGGAATA 16874 36 94.4 28 ...........G.............G.......... TCTCGTGATGGTGAGACCACTGTTTTGA 16938 36 100.0 30 .................................... GAAAGTTGGGGGAATAACTCTCAAACGAAT 17004 36 100.0 30 .................................... TAGTCACTTTTTTTACAATACTGTTATTGT 17070 36 100.0 29 .................................... TTAAAAATTTTTCATTATTAACGTCTGGT 17135 36 100.0 29 .................................... CCTAACAACCCAAAAGCGTATCAATCGTT 17200 36 100.0 30 .................................... TTTCTTACACCTATCAAGCGTGCTCAAAAC 17266 36 97.2 0 ...................A................ | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 97.9 29 GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Left flank : AAGTGAAATTAACAAAAGGAAATTATTTATCGATTTACTTAAAGACGATGATAAAGAAAATGTATTACTTATATTGTACCCAGAAGCATTTTTGGGGCTCAAAGATATTCAAAGATTTCTACAATTGATTAAAGGTTATCAACTCACAACCATTATAATTACAAATCATCCATCTATTATCATTGAGGAAGAAAATGTTTATTTATGCAAAAGCAATAAAGAGTGTCACTCAATCAAAGATATAAGGGAAGATCTAGAAATTCTTATGCCACAAGAAACAATTAATGACAAAACGGTTAGAATGATTGCTTATCATGAATTCATAGGTACAGATTTAAAAGAACTAGCACGATACTTTGAGTTTATTAATGATTACAATTAAGATATAATTGAATTTACTATGATAAATTAAAAACAACAAGCTTTATTCAATGTTTAACTTCTTAACTAAAAAGCTAAAACCTCAAAATGGTAAAAACTATAGTGTGTATTTTTGAATT # Right flank : TATAGGTGACATTGTTTACGATGACATGAGTTTTAGAACTATGATTATTTA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 25-453 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKXX01000099.1 Staphylococcus felis strain F18 k127_340, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25 36 94.4 29 ...................A.....A.......... TATAGGTGACATTGTTTACGATGACATGA 90 36 97.2 30 .........................A.......... AATTGGGAATAATCGTGTTAGTTTTGAAAC 156 36 91.7 29 ...........G.......A.....A.......... CGCTAGTACTGTTACAGATATTATCGATA 221 36 97.2 29 ........G........................... CGCCCTTTTTACTTAGACATTTTATTAGG 286 36 100.0 30 .................................... CGTAAACGCTAACAATGATAGATGCTTTCT 352 36 97.2 30 .............................T...... TAAAGCAGGTGCTGTTAAGTGGTTGAAAGG 418 36 88.9 0 ............C............T......T.C. | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 95.2 30 GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Left flank : ACACCTATCAAGCGTGCTCAAAACG # Right flank : CATTTTTTCTGAATTTTTAGATATAATGATGATACTGGAATGACCAATTGATAATCAATAATCGAGAAATCTTAATGATACATGTCTTTTCTTTTCATTGATATAATGAAATGATATAGTCAAATATTTTTTAGAGAAGATTGTTTTATTTTATTGAGAAAGGGGAAGTTCGATGAAGTCTATTATTGCAAAACACGCTTTTAAATTGTCAGATGGGAATTTATTTGAAAAAGTGACACGTGAAAAACCAATAGTGAATGCTCATGAAGTAGGAATAGCTGTTCATGCATCAGGTGTGAATCCGATTGATACAAAGACGCGTCAAACACCACTTCAGACTGAAGCACGCGTATTAGGATATGAAGGGGCAGGTGTTGTTGAAGCAGTAGGTGAAGATGTGACGCGTTTTAAAGTAGGGGATCGTGTGATGTTTGTCGGTGCGCCTAAATGGGAAGGGTCGAATCAAACTTATCAAGTATTAGATGAAGTGTACATGACGC # Questionable array : NO Score: 3.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 25-653 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKXX01000100.1 Staphylococcus felis strain F18 k127_341, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25 36 97.2 29 ...................A................ TATAGGTGACATTGTTTACGATGACATGA 90 36 100.0 30 .................................... AACATCTCCTGCCTTTACGGTTTTACCGCT 156 36 100.0 30 .................................... ACTTCATGAAGCTGATGCAGATGTTGACAT 222 36 100.0 30 .................................... TAGAGTTGTGATGTGTGTCTATGTTTAATG 288 36 97.2 30 .........................G.......... TTGCCTGGGTGGGAAACTGTAATAAGACGT 354 36 94.4 30 ............C............G.......... TCTCATGACGTTGAAATTGAAATAAGGCGA 420 36 94.4 30 ........G................G.......... ATGGACTTGAGCACGCGACTAAAACATACA 486 36 97.2 30 ........G........................... GGAAATGTGGAAGACTTTTACACATGAATT 552 36 94.4 30 ..............G..........G.......... TTTCTTACACCTATCAAGCGTGCTCAAAAC 618 36 97.2 0 ...................A................ | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 97.2 30 GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Left flank : ACACCTATCAAGCGTGCTCAAAACG # Right flank : TATAGGTGACATTGTTTACGATGACATGAGTTTTAGAACTATGATTATTTA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Alternate repeat : GTTTTAGAACTATGATTATATAGAAAGAAGTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //