Array 1 15274-12397 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOE010000045.1 Leptolyngbya sp. FACHB-1624 contig45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================= ================== 15273 35 97.1 38 ........A.......................... ACGAGAACGAAAAGTACAAAGTTTTTCAACTCGCTGTG 15200 35 97.1 37 ..........A........................ TGAGCGATACCTCACCGCCGAGCCAGCTCCCTACGCC 15128 35 100.0 39 ................................... TCAATCAGCCCTACAACATATGTTGGGTATAAAAAACTT 15054 35 97.1 40 ..........A........................ TCACTTTGGGGGTGACTTTCCGAGTTTTCCGTTGTCTGCG 14979 35 100.0 38 ................................... TGGACAAGTTGTTGCTTGTTTTCTGCTGTCATGCTGAG 14906 35 100.0 38 ................................... TTCATCATGATTTGTCGAGCGGTGTCATTCTTTTTCGA 14833 35 100.0 37 ................................... ACTGCTCATCTAAAACAATCCATCCCACGCACCGACA 14761 35 100.0 43 ................................... TCACAAAATTCAATCAATTCCCTATATTCTTGCTGGGTAAGAG 14683 35 97.1 40 ..........A........................ TGTGCTGCGTCAATCACCATTGTTCGTCCTTTTGTTTGGC 14608 35 100.0 42 ................................... TCGTATAACCTGCCACAAACAACAAAGCCAGAATTGTTTCTG 14531 35 94.3 35 .C........A........................ CACAGCTAATAACAGTATCGAAGTTCCAATAATTC 14461 35 97.1 42 ..........A........................ TTGATTGCCTTAGAATTGTCAGCAGGCTTTTGACGCTGCGCT 14384 35 100.0 37 ................................... GGGTTCGTAATGGTATTGCTGATGCTTCCCGTAGAAA 14312 35 100.0 45 ................................... ATCAGAGCCTGAGCCTGTTCGTTAGACAGTCCAAGTTGATTCAAC 14232 35 91.4 40 .........TGA....................... GGTTTGCCGAATTGACCCAACACTGCATCGAATGAACGCG G [14219] 14156 35 100.0 41 ................................... TGAGCAATCGGTGAACCCGTTGCGTCACCAGTGCTGCAAGT 14080 35 100.0 42 ................................... CTTATAGGAGACAATATGATACACACGATATCTGGAGCATAA 14003 35 100.0 41 ................................... TTTCCACAGTTTGCTCCCTGCCGTGTTGCCACTGCAAGAAT 13927 35 100.0 39 ................................... ACCTCACATTTCTGAATGGAGACTTCAATCTTCCATCCT 13853 35 100.0 41 ................................... CCCTGAATGATGATTTCATCATTCGTTTGAGTTACAGAAGC 13777 35 100.0 44 ................................... TGATATACAACGCGCTGCAAGTTGGGGTCGTAATATGACACTCG 13698 35 100.0 38 ................................... AGAACAACCAGAGCGGATGCGACCTTGTTCCCGTTCAG 13625 35 97.1 39 ..........A........................ CCTTGATCAGGAGTGAGACCAGCTTTTGAAAAATAGCCA 13551 35 100.0 40 ................................... TCAACTTCTGTCCGATTTCCACCAGTGTTGACCGTTGCAC 13476 35 94.3 42 ...A......A........................ CCAATGTTTGTCACACGAGAGCGAGATGCAGCTGGGGCTGAG 13399 35 94.3 41 ..........GA....................... TCCCAATGCTTAGCAACTTTCTGGCGGTTCTCCTCTTGAGA C [13386] 13322 35 100.0 38 ................................... AGTGATCTGGATGGTTTCCCGCCCGAACTCAAACTCCG 13249 35 100.0 38 ................................... CAAGACTTCCATCAGGGTTATGATAACCATGCAAGTGA 13176 35 100.0 37 ................................... CTAGCAAAGACTTGCTTGCCACGCTTTCCAACTTCCT 13104 35 100.0 40 ................................... GATAACGCTGATTGTTGTTGCTGAACTTCTTCGAGCTGCG 13029 35 97.1 38 ..........A........................ TGCGCTCCAACGATGTTGAATACGTTGAAATCACCTCT 12956 35 97.1 40 ..........A........................ CCATGATTATTCACCGCAGTGTTAGGAGCGGTCTGCGAAA 12881 35 94.3 37 ..........GA....................... GGGGTTGACTCTGCGCTTGCCTCAATCTTTCCTGCAC C [12868] 12808 35 100.0 37 ................................... GATAAATCGCCTACCACATCAAATGTGAAGGTTTGTT 12736 35 88.6 40 ..........GCAG..................... GTTACCACTCGGAAAGTGCGACCTGCCCTTCCTGGCACTG T [12721] 12660 35 94.3 40 .C.............T................... AAACCAAAAGCACCAGCAGCGAAAGAAGCCAGAACGACGT 12585 35 91.4 40 ..........G....T.................G. TCCACTTGTTCAGCAGATGCACACTGTCCTTCAGTTTCGA A [12574] 12509 35 94.3 41 ..........GA....................... GCTGTAATACCGAGCAGAACCGTTACTACGTCAGTGACAAA C [12496] 12432 35 85.7 0 ...A......GCAA..................... | T [12417] ========== ====== ====== ====== =================================== ============================================= ================== 39 35 97.4 40 GTTGCCGATCTTCTGCGATCGGATTTGTTGGAAAC # Left flank : CCGGATCAGCTTTGTCATAATACTCGTATTTTTTTATTCATAGATACTTAGGTTAAATGGATGTATCAAAATCTGGAAAGTATCGATGAAACTCCGGAAAGTGTGCATGAATTTTTTGAAAGTGTGCAGGTGTGATTGAGCAGCGCCTATATAAATTTTGAAACGGTGGACGTTGCTCTATGCAACATGGACGAAATTTTTGAAAGTGTGCATGAAAATTTTGAAGGGATGCACGTCTGACAGATTTTCGTCCATCTAAAACCGGAAACGATGGACGTATGCGGGTGAAGAACCATAGAGAAGCCCAATTTCCACGGAGGTCGATCGATCTCTGAAAGTGCCATTCTTTCGTTGACCTCCGTGGATCGTCTATGTGGCAAGGATTTCAGCGCTTGAAACTCCATTCTATTCTCAGGAAGGAAGTTGTTATTGATAGTGAAAATGACCTGCGTGGATTTGCCCTCTGAAACGCTTTCTGTGTAATACTTCTGGAGAGATAA # Right flank : TGAATCTCCCAGTTCTCCGGGTCGAAGTAAGCGTTCTACTTGCAATGTTTTGAAATTCTCCTCAAAGCTCGATCGATAACGGTCGGGCTTTTTTTTTGAAAAGCGCGATCTCGCCTCAATTCACAGCCCGTAAAGATGAAACCTCGATCGACAATTTCTCGATCGCCACAGCAACATCAACTTAGACGAACTCGCATGAAACGCTCATTCGTTGATTCAGGCGTTCTGATCTCTGCGGCACGAGGAAACAGCGATCGCACAAAAAGAGTTTTGCCACCCTTAGTGAAAATCAACAGGTCTTCCTTTCCAGCATCTTCATCCTTTTTGAGCGATCGCATTTTACTGCAAGAATCAATAAATAGTCTTTCTATAGATGAGCATATCTCTGAGACGAAATGAGCGATCACACCGAGTTGATTCAACAAGAAGCAATCAGGATTCTTCAGATTCTCATTGACACTCCATTTGACGAATGCTGCCCATTATCCAAAGACTATGCA # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCCGATCTTCTGCGATCGGATTTGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.90,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [23-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 21566-22508 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOE010000045.1 Leptolyngbya sp. FACHB-1624 contig45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================== ================== 21566 36 100.0 39 .................................... TCCTTTGAGTTTTTCCATCAAGGCACCCGTACAGGTTCA 21641 36 100.0 40 .................................... TTTCCGACTGAGCCTTTCATGGCTTGCCTTAATTCTTTTT 21717 36 100.0 36 .................................... TCAATAGTTCCTGCAGAGACATCCAGAACAGCATAA 21789 36 100.0 38 .................................... ATAACTGCTTTTGCAGTATTGAAATAAGCTTCAGGAGT 21863 36 100.0 51 .................................... CCACAGAAGATCAACTGCTTAGGCGGAGTTCCTACCACGATGCATCCAGGC 21950 36 100.0 36 .................................... CCGTCAATGTACTGAACTTCGTATCCTCGCCATCCT 22022 36 97.2 41 ..........T......................... TCAACGTAATCGACTGTGTAGCCTCGCCATCCTTGGTAATG 22099 36 100.0 39 .................................... TTCTTACAGGTAAATCTAAACTCCACGTACCGCTTACCG 22174 36 97.2 36 ...........T........................ ACCGTTCAGTCAATATTTGTTTTCTTGGTTGTCCGT 22246 36 100.0 44 .................................... ACAGGTAAGAATAAATAGTGTCCCCAAGCTTTGCCTCTGCTCTT 22326 36 100.0 38 .................................... GAATAAAGCTTTTCATCACCATCAATTGGAGTAATGGA 22400 36 100.0 37 .................................... GGAAGCTTCTTAACATCTTTGATGCCATAGATTTCAA 22473 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================================== ================== 13 36 99.6 40 GTGAACCGATCCTTTGCGATCGGATTTGTTGGAAAC # Left flank : TCTCTTGGCTGCATGGGGCGTATCAGGAGAAGATTGCGGGGGTGCAGGAGCGGGGTTCGATTTATGAGTCGTCTTTGACGGGGGGTGTGGGGAGGATTGGGCGATTGTGGCATCGAATGTATCCGGTGGTGGGGTTGCGTCCGCCTGAAAAGCCCGGAGGGAAGCCGATTCCAAAGCCAACTCCGAGATTTTTGGAGGTGTTGACGATTTTTCCGGATGAATCGCGGGAGTCGGAGCAGTTTTTGCGGTTTTTGCAGGAAAATCAGGGGACTTTGAGGGGGTTTCGGCGGCTTTGGGGTGGAGAGTAGAGGTGCGAGACTGATGCAAATTGGCTGCAATGCTGATTCTTTGGTTTCGAGCCTCGATAGCTTGTGGTGTAAGGGTTTTGGAGAATTCGGGCGAGATGGATTCGCAATAATTGGGGGATTATTGACTTGAAAAAAATGAGGCTCGCAAATAGGATGTGGAAGGCTGACAGGATAAGGATTCTGTGAGCAGGG # Right flank : CTAGTGCGATCCCATGTGTTGGCGGAACCAGTTTCGATTAGGATTGCCGATCATCTGCGGTTACGCAAACGTGTGCCGAAAGCATCGGATTTGTTGGAAACGTCTGATCCTGTCCCTGCCCTTGTCATTGACCTTGGTTACTGATCGTCCGCGATCGTATTTTCTTCAAAGCTCGAATCGATAGATCGAGCTTTTTATTTGAAAGATTATTGGCTGCGCCCAAATGAATTCTATTGATCGATCTCGGAATGCAAGTAATACAGATGTCTCTATACGTCACGTTAACCTTTGTTATTTCTTTTTGTCGGCACAAGTTAAAGCCGCAAACAGAGCCATGATGCTCTCCTGGAATCACTCTCAATCACCAAGTACATGTGATGCTGTCCAGAACGTCTATACCTCTATCTCAAGAGTGTGGGCATCTATAAAGCCTGTCGTATCAATAGTTTTAGATTCTTTTCCACACTGGTTCACTGCATTTTGAATGGAATTAAACTTTA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACCGATCCTTTGCGATCGGATTTGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 37928-36424 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOE010000039.1 Leptolyngbya sp. FACHB-1624 contig39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 37927 37 100.0 39 ..................................... AAGGCAATTACCGAAGAAAGCTCAACTCGATGGGACGAT 37851 37 100.0 36 ..................................... GAGCATCTGTTGACGTTTTTCGCCATAAACCTCTAG 37778 37 100.0 39 ..................................... AGAAAGTTGCTCTGCTTTATCAGAGTCTTGTGGCGCAGC 37702 37 100.0 36 ..................................... CCCAAATTACTCCAATTAAGTTGCCGCCAACTTTTA 37629 37 100.0 33 ..................................... TTTATCCCGCCTTTAATTATTTAGTTATTTAAC 37559 37 100.0 34 ..................................... ATTAGAAAACGATTTAGTCTACCTCCAATGTTCA 37488 37 100.0 37 ..................................... AACTTCAACAGCTTTAAGATCTAGATTAAAAGCTAAG 37414 37 100.0 35 ..................................... ATTCAAGTTGATCGGTTAGTTAGCAACTTAAAAGA 37342 37 100.0 35 ..................................... CTTCATACTTTCCAATTAAAAGAACTAGTAATTTA 37270 37 100.0 35 ..................................... CTGAACACGACCGAGATGAGAATGCAGCCAAAAAT 37198 37 100.0 38 ..................................... ATCGAAGACTGGCCTGTAGGACAACAACTGGATTTTCG 37123 37 100.0 32 ..................................... TTGACGCTCTGCGTCAGAATCCCCGAAGGGGA 37054 37 100.0 41 ..................................... GAAAAAATAGCGCATCTAACCGAAGCGATTGGTATCCCGAT 36976 37 100.0 35 ..................................... TAGACACCATTAGACCAAACCCCTAAAAGAGGTTC 36904 37 100.0 36 ..................................... TAGATGATTGAGGAATTATTCTGATCACTTGACGAT 36831 37 100.0 35 ..................................... AAGAAATTAGTAGACGGAGATTCATGTAAATTTTC 36759 37 100.0 46 ..................................... CTATGACAAGCAGATGAGAGAACGAGTTATCAAGCGCCTGTACGAA 36676 37 100.0 35 ..................................... AAGGATGAGAAGTGGTACAAGTCCAACTATGCCAA 36604 37 100.0 35 ..................................... GATAAAATACCTGCAAACGCAGCCGTTAAATCAAT 36532 37 100.0 35 ..................................... GACCATTCCAACTTTTAATCGGACAGAACGTTGAG 36460 37 83.8 0 ..................T...T....AA...A..G. | ========== ====== ====== ====== ===================================== ============================================== ================== 21 37 99.2 36 CGATCAGCGCACTTAATCCCGGCAACGGGACTGAAAC # Left flank : CGACGATTTTAGTGGAGTTGCATTTGTTTCGGGGATTGGCGTTTGCGTATCGGAGTAAAAGCGCGATCGATATTGTGAACGAGTGGCATGAGGAGTTACCGCAGGTGCGGCGGGTGGTGCGGCAGGTGTCGAGTACGTTTTGGTTGATTCGGGAGATTTTGCGATATGGGCAAGATTGTGAAGTGGTTGCACCAGAAAGTGTGCGGGAGTTGATGAAACAGGAGATTTTAGGGATGTGCGATCGCTACGGAATTCAGTCTTAAGTAAAGACTCGACAGAATTAGTCGATCGATTTATGATTGAACGAGATTTTGGCAAACCGAAGCGGGGTCGAAAACCCTGGGGGGTTCGCCAAATCGCTAGAACCAAGACAAATCAATAGTTTTAACGATTCAAAAAATCGCCATCACTGTAGAATAAAGGCTGGGATCAATGTTTCAGATGACCTTTGCCAAAATCGGTTCTACAGCCCTTGTTCAGTAAGGGTTCCAGATGGCGGA # Right flank : AGTTCACGCTCTTTAGATGGCTTGATGGTTCTAGCAAAACCTGTACCGTAGCACTACGGTACAGGAAACTTAAATTCTAAATTCCCTCATTTACCAGAATCAACTCAATACAGTGTCTAATTCGGTCTTATGGCGCTATACGTGCAAGATAAGCTGCTCGGTAATAGCTGTCGAGAATCTGCAGATGATCAAACCCCATCATTGCTTTTTGCTGTGCTCCGGTCTGGCTCATTGACTGATAGTCTGCATGATATTTTGCCACTACTGCATCTGTTGCAGCGTACATTGCTTCAAAAAGCTGCCCATGCTTCATCAGAACAAGTCCACGAGTACTTTCAACACTGGCTTGGGATTGAGAAGTTTCTGTATCGAGACCGCCATAAACTTGATGCCGTTCGCTATTAGTTAAGTCGTACCAAGAATTTGCAGGGCGTTGATGATGAACCAGAGCATAAGATCGAGCCGCGATCGCTTGCGCCTTCAATGCTTCAATCGACCAG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGATCAGCGCACTTAATCCCGGCAACGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 51040-53198 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOE010000039.1 Leptolyngbya sp. FACHB-1624 contig39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 51040 37 100.0 35 ..................................... AAGTAGAATTCTACGGAACCCTATCCGCACTCTAG 51112 37 100.0 38 ..................................... CTTACATCCCAACCTCAACAGATTTACGCCCCGGCGTT 51187 37 100.0 33 ..................................... TGCCAATGCCGCCCGATCCAGATGCGCTCCCCT 51257 37 100.0 34 ..................................... AACTCTACTACCGTTCTTCTAAGTTTCCTCCCAA 51328 37 100.0 35 ..................................... CCATGTGTTGAGGGGAATCTTTCATCCCTTCCTGA 51400 37 100.0 36 ..................................... ACGACGATCGCAACCTCTTCCCCGAATTCTTCCGAA 51473 37 100.0 35 ..................................... AAATAAAAATAGGCGAGATTTTTAGAATCTGTGGA 51545 37 100.0 36 ..................................... AAATTCTTGGAAGTTTGGCAGATTAAGCAAGACTTT 51618 37 100.0 36 ..................................... CTCTAACAAAATAGAAACTGATTTTGCTGTAGGAAG 51691 37 100.0 33 ..................................... AACTCTACGCGATTCTGGCAACCCGTGCTAAAG 51761 37 100.0 36 ..................................... ATCCGTGTATCTCTTGCCGCAAACGGGGCAGCGATA 51834 37 100.0 37 ..................................... GAGAAAGCGATCGCGCGTAATTCAAGGAGAACAAAAA 51908 37 100.0 39 ..................................... TGAAATTCCCTTTGCCCCTTATGACCTGCGCCATGCTTA 51984 37 100.0 37 ..................................... TTGTTTGACGATACAAAGGCATTTATCCCACGGGACA 52058 37 100.0 36 ..................................... GAACGTAGAGTGGTCTGACAACTTTGTTGAACACGG 52131 37 100.0 35 ..................................... TTGATGATGCAACGCCCCTCTTTTCTTGGGTTGTT 52203 37 100.0 35 ..................................... TATCGGTTTCGTTGCCCATACGAAAGACGATTGAT 52275 37 100.0 35 ..................................... ATCGGAGCTTCGGATACCGTTGACCAGACCAGATA 52347 37 100.0 35 ..................................... TCGAGAGACTCAGCGATCGCAGCCAGCGACACCGC 52419 37 100.0 36 ..................................... TCGGGCAAGTCGTCTACCCACAATATTGAGCTTTGC 52492 37 100.0 41 ..................................... ACCCAAATCCGACTTGGGGCAGGGGGGCAACCATTTGGGGA 52570 37 100.0 38 ..................................... CGTTTCACTTCTTGATTTTGCAAATACATCAATTCCAG 52645 37 100.0 37 ..................................... AAGTATGAAGATTTGCTGTCTGAGCTAGGGCGATACG 52719 37 100.0 36 ..................................... CTTTCGAGTAAGCGTGCTTTTTTGACTGTGCTAGAA 52792 37 100.0 35 ..................................... CAATTCCTTCAATTGGAATCTCGCCTGTCTCAATC 52864 37 100.0 37 ..................................... ACCAGCAGAACGGCAAATAACTTGGCGTAAAGGGCTT 52938 37 100.0 42 ..................................... TAGTGATGGATGAGTACGGGCGACTCTGGAAGGTAGAGCCTG 53017 37 100.0 35 ..................................... AAACGGTGTCACGGTTCGAGCAACAGTATTGAGGG 53089 37 100.0 36 ..................................... AGTAATTGCAGCCGAAACAGCTTCATCCCCTGCAAG 53162 37 94.6 0 ........C...A........................ | ========== ====== ====== ====== ===================================== ========================================== ================== 30 37 99.8 36 CGATCAAAACCTCTAATCCCGGCAACGGGACTGAAAC # Left flank : GGTAGATGACGACGCTGTTTTATTTGATCATTTATGATTTGCCGGATAGTAAAGCGGCGAATAAGCGACGGACTCGGTTGCATAAGTTGTTGTCAGGATATGGGACTTGGACGCAGTACAGCGTGTTTGAGTGTTTTTTGACGGCGGTGCAGTTTGCGAAGCTTCAAGTTCAGATTGAACGGTTGATCAAGTCGGAGGAGGATGCGGTACGGATTTATGTGTTGGATGCGGGGGCGGTGAAAAGAACGATAGCTTATGGGTCGGAGAAACCGCGCCAAGTTTCGGCGATCGTTCTATAATGGCAACAGATTTTGGCAAACCGAAGCGGGGTCGAAAACCCTGGGAGGTTCGCCAAATTGCTAGAACCAAGACAAGTCAATAGTTTTAACAGTTCAGTAAATCGCCATCACTGTAGAATAAAGGCTGGGATCAATGTTTCAGATGACCTTTGCCAAAATCGGTTCTACAGCCCTTGTTCAGTAAGGGTTCCAGATGGCGGA # Right flank : CATAAGTGGCAAACCGCAATCAGACGTAAACAACTTCCGATCAAACCGTCTCACTCCGCTTCAGATCTCGACTATGCAGGCAAAGCCGTCACCCTAAATGAGCCAGACCGGGGCACAGCAAAAAGCGATAATGGGGTTTGACCACCCGCAAATTCTTGACAGCTATTACCGAGCAGCTTATCTTCATATAGCGCTGTAAAACCGAACGAAACGCTCTATTGAGTTGATTCTGGTAGATGAGGGAATTTAGACTTTAAGCTTCCTGTACCGTAGTGCTACGGTACAAGTTTTGCTAGAACCATCAAGCCACCTAAAGCCCTAATTTTCGTGCCTAGAATTACCGCTATCAACAAACAAAAAATCACATCAGCGTGAAGCAATACGCTAAATTTCGTGTACTGTAGTGCTACGGTACATACCTCGCCACTATTAAAGAGGCTCATGGCAAAGCAAATCAGATTAGCAATTATGACCGGAGCTGGGGGAGTAGGAAAGACCAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGATCAAAACCTCTAATCCCGGCAACGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 67245-71551 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOE010000039.1 Leptolyngbya sp. FACHB-1624 contig39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 67245 36 100.0 39 .................................... TCGACTGAGGAGCCGCCATCGGCGTGTTGGTTGTTTGAT 67320 36 100.0 43 .................................... ACTTTTATCACCTTCGTGAGCGAAAAAAGTGTCATCGCAATCA 67399 36 100.0 38 .................................... AATGTCATTACCTAGGTGCGAGCCGTTTTTACCAGCTT 67473 36 100.0 39 .................................... GATTGGCGAACCAATTGCATCGGATGCTGGAGAGCATCC 67548 36 100.0 41 .................................... TCATAGCGGGCTTTCAACTGTTTGTAGCGTGTTTCTAAATC 67625 36 100.0 40 .................................... TCGCAAGTCCATTAGACTTAATTGCATTCTGCTTGATAGT 67701 36 100.0 37 .................................... TCCGAAGATACGAAAGCATAAGAGCGAACCAACGCTG 67774 36 100.0 35 .................................... CCTCGTTGCCCTGCTCACCGCTACAACAACAAGCC 67845 36 100.0 40 .................................... CCTTCACCAGTTCCATTACCGCCGAAACCGTTTCCGCCAG 67921 36 100.0 38 .................................... CGCATTCAACATCTAAGAAAAGACCGAACTTCGGTTCG 67995 36 100.0 39 .................................... CCTTGCTTTGGAGTTGGAGTCCGAGAAAGACTTAGCTGC 68070 36 100.0 40 .................................... TGTCCTTCTTTTTTTCAGCGGGCAATTTTTTTTGCTCAGT 68146 36 100.0 41 .................................... CTCTGCAATCGCATCTAAAATGGACTGCTGCGTTCCATCAA 68223 36 100.0 38 .................................... ACTAAACTCACACACACCGATTGCGCCAGAAGGATTTT 68297 36 100.0 46 .................................... ACGAACGAACCAAAATGTGCGGTTGTTGTTGCTTTTTTGCGTAGCC 68379 36 100.0 42 .................................... TGAGCTACGTGGGAAACCGCAATCCAAACAATCGGCAGAATA 68457 36 100.0 40 .................................... GCTTCTTTATCAGACGTTTCGGTCGGCTCGGTCGCTTCGT 68533 36 100.0 41 .................................... CAGCGTTATTGTTTACCTCGACGTTGACAAACGCCTCGGCC 68610 36 100.0 40 .................................... ATTGAATGCGGACAATCGTAATTGTGCCATTATCGTCCAT 68686 36 100.0 39 .................................... CTCGCCACGCCGTAGCTGGATTAATTTGTTACGAGCCAT 68761 36 100.0 37 .................................... GGGGAGACCCCGTTGGTGACAGGGACGCTTAGTCCGC 68834 36 100.0 37 .................................... AAGCTTTAATCCATCTTTGAGATCTGCAATATATAAA 68907 36 100.0 42 .................................... AATCCAGTAGTTGTTTTCTTCTTTTATCGAAAACAACACAAA 68985 36 100.0 39 .................................... TTTCATTACGCAAACACAAGCTCTGAGCCAATCCAGCAG 69060 36 100.0 43 .................................... GTTAACAACAAAAAAGTTGCTTACCTCTTGGTCTGACAATTGA 69139 36 100.0 40 .................................... TTCCTTCTTGCCCACGTTCGCCTTTTTCTCCGTTCAGTCC 69215 36 100.0 38 .................................... GTGAACTTAGGCTGAATCACATGCAAGTCAGTTTGCGG 69289 36 100.0 38 .................................... CTTTGAGGTAGTTTTTAAAACGTAAGCCAAACGGTCAA 69363 36 100.0 40 .................................... TTGGAGTCCGCTGGGTCAACTTTTGCTAGATGGCTGCGAA 69439 36 100.0 36 .................................... GTGCTTGGGGGTGGCGGAGGCGGGGTTGCCCGAGAT 69511 36 100.0 43 .................................... CTTACCAACCACAGCGCAAGTAAAGCGATCGCAGACAAAACGA 69590 36 100.0 47 .................................... AAAGTTTCGCCATTGATGACAACAATGCAGCATTTTACCTTGGTTTT 69673 36 100.0 37 .................................... TTTGGGTGTTGGCTTGCGACAATGTAGACACTGTAGA 69746 36 100.0 41 .................................... AGGAGCAAGAATTGGCGCAACCGTGATTTTGGAATCGATTT 69823 36 100.0 40 .................................... TTCAAAGCATAGAAACGCCCTGAAGTGTTTTCGCCTTCTT 69899 36 100.0 41 .................................... GCTTTGCGAATTCTCCGAGTACGGCATCGAAACCTCGGTTG 69976 36 100.0 35 .................................... CCTTCTAAGTTGCGACGCAATTCGATGATCTGCTC 70047 36 100.0 47 .................................... TCGCCGGCAATCTGACGACGAGCATCTGCTGCGGTCAAGTTCGTGCG 70130 36 100.0 40 .................................... CAAAAAGAGAAACCGATTACGAACAGCGTTAAGCGTAGCT 70206 36 100.0 40 .................................... TAATCCGAGCGAAGTTGTTAGTACGTCAAAAATCAAAAAG 70282 36 100.0 45 .................................... CAGCTGCAAGTCGCGCGAAGCTTTGGATCTCGTCCGCAGTGTTAA 70363 36 100.0 41 .................................... TCCAAGAACAGCGTCAAAACCTTGGTTGATTTGCTCAGCGG 70440 36 100.0 41 .................................... TTTGAACTTATCAGACCCAGCTTCGTCTATTTGCTTGAGAA 70517 36 100.0 41 .................................... GATTTAGATTCCGACGCGGCGGCTGCCCCAGTTTGAATCGG 70594 36 100.0 43 .................................... GTCTGAAACGCTTGCTTTTCAGCTTCACGTCTCGCACTGTCAT 70673 36 100.0 39 .................................... TTTCGCCCCCTTTGCCACCACGAACCGCATCCTTTTCCA 70748 36 88.9 37 ...................CGAT............. CTGGGACAACCGTTGTAATGTTTGTCACAGGAGTCGT 70821 36 97.2 40 .......................T............ TCAGTAGTTGCCGTAGCAGGAACTCGCGCTCGTCCGAACA 70897 36 100.0 44 .................................... TCAGAACAAGTCGTCCGAGAACGTTATAACTATTTTCCGTCATG 70977 36 100.0 41 .................................... TCAATATATTCTGTTGTATCCATCACCTTCAGAGCTTCAGT 71054 36 100.0 40 .................................... CCCTTTCGGGACTAAGCGAACAACTCCGCTTTCCACCCAC 71130 36 100.0 37 .................................... TCAAATGAATGAATGAGATCAGGTGATAAATCTTCCT 71203 36 100.0 43 .................................... GAAATCTCTCCAGCTTCATACTTGAAAGACTTTTTGATTTGAG 71282 36 100.0 42 .................................... TCCGATAAAGAACAAGAGTTGTCCGAAAGCAACCAAAATCGG 71360 36 100.0 39 .................................... TCGATATCAAAAGAGCTTTCTCCCCCTTTGACTTCTTCT 71435 36 100.0 45 .................................... GTTTTCGTACGAGCCGCAGGGTTCAACAACTCCAATGTTCTGAAC 71516 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================================== ================== 57 36 99.8 40 CTTTCAGACTTAATCCCCGATCGCGGGGATGGAAAC # Left flank : GCGTATGATATTGCGGATGATAAGCGGCGGCAGAAGTTGGCGACGTTTCTAGAGGGGTATGGGCGGCGGGTTCAGGAGAGTGTGTTTGAGTGTTTTCTGACGCTAGAGGAGATGAAAGCGCTGCATGTGAGGGTGCAGAAACGGGTGAAGGTTGAGGTAGATAATGTGCGGTTTTATTGGGTTCCGGCGGATGCGGTGCCGAGAGCGCTGACGATTGGCAGTTCGCCTCCAGAGTCGCCACCAAATTCTTATATTCTCTAAAGATTGATTTCTGGTTGGAAGGCGATATATTGGGTTTGTATCGCGGTTTCCGCGCTGGTCGGCAGAACCATGAAAACCGTATAGTTTGGTTAACCAGTGCGGAAGCCTGGTTCCATAGGCGTTTCGCACGTTTGGCTGATTGCCAAAATGAGAGAAAGTCTTGTCTAATTGACCCGAAAAATCGCCTGTGCGGATTTTCGTTTGGGGAGCCTCTCCCTGTCTAGGTTTCAGAGGGCGGA # Right flank : CATTAAAGGTGACTGGATGCCCACTGCCAATATTGCAGATCTTCTCAGAATGGCATTCCCATGAGTAAATTCACAATTCAAAAACCTTAACTTCTGAAATCACAGGTTCGTTGTGTCACGCTTCTATTTTCCGATCGCGTAAATCGGTGGCGAGATAGAATATAGTCATCGCCATTTGAGGAGCGTCCCCATGACCGAACAAGAGTGTCAGCAAGTCTATCAAGAACTCGCTCAAATGCTCCAAGAGATCCAGTTCGGATGGGTCGTCGAACAGGTAGAAGCCCAAATACAATCGAACCCCCTAGCCAACACCCAGATCGATTCACAAACAGAAAGCAATACTTCTCAAGCCGTACTTACCAAACCCGCAACATCCACGATCTCGACACAGCTAATGCTGCTGATCGACAGAGTAGAACGAGCGATCGTAGACTCGATCGAAATCAAAGGCGCATTAGTCGATTTCCTCACTGACGAATCTGCACGTCTGCAAGCTCCAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGACTTAATCCCCGATCGCGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.10,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 73314-73654 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJOE010000039.1 Leptolyngbya sp. FACHB-1624 contig39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 73314 36 97.2 43 ..........................A......... GAACAACTGGGCACCAACAGAGTTACGCCGCACTCCCAAAAAA 73393 36 100.0 42 .................................... TCGTCGGTAGAAGTGTCGCCGAAGATTTTGGCTTCAGGTGCT 73471 36 100.0 36 .................................... GTAACAAACTGGTCGTTTGCGGACTTGGTCATCAAG 73543 36 88.9 40 ...................CGAT............. AGAAGTTGATAGAGGCTTATAAATAACCTCTTCCGTTCCC 73619 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 5 36 97.2 40 CTTTCAGAGTTAATCCCCGATCGCGGGGATGGAAAC # Left flank : GCTTGATGTATGCGTTGCAAAATAGCTTCAAAAACTTCAAAGCCAAGCATTGATCAAGCGGTGAGAATTACTTGAACCAACTGTAAAAGGTCGGTCTAAAAGCGCTGTATCTGTCAAGAAACGGGGAGGATAATGTGCGGTTTTATTGGGTTCCGGTGGATGCGGTGGCACGGACGTTGGTGATTGGGAGTGCGATGCCGGAGCCGCCACCGGAGTTTTACATCCTGTAGGGTTCTTTGGTTTGATTTAAGGATTGATGACTGGACAAGATAGAGGTTGTCCAGCTATTTTTGTAGTCAGTGGATACAATCCACGGAGGTCTGCTGAACCTTGAAAACTGCATAGTTTCGTTGACCTCCGTGGAATGCTTGATGTGAAAGGCATTCAGGCATTCAAAAGCTAAAGTTTCCGGGATTCAGAGTCGTGTTTCAGACAGGTTTTTTGACCTGCGTGGAATCGAGGGCTGAATCCTAAGCTAGGAGGGGTCTCCTGAGTGAAGC # Right flank : CTACCGAACCACCAGCCAAACGTGCGTTGCGTGCGTTAACTTTCAGAGTTAACGTGAGTTCGACGCGCTAAAAGATGGCAGGAGGCAAAGCAGACAACCCTTTCGGTTGCAAGTCGAGCGACGGTAACTTGGGCTGATAGGTGTAAGCAATCAACCCGGCCATCAGGTTGACCAGAAAATTCCAACAACTGCGATGACGAGAATGCTCAATCTGACAAATATTCTTCAATTGGTCATTCACGGACTCAATCAGCGATCGTTTTCTGAGTAAAATCTTGTCTATCAGCTTGACGAGCTTCTGTTTCATGTTGCGCTTGCG # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGAGTTAATCCCCGATCGCGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.10,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //