Array 1 664-453 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIOW01000010.1 Salmonella enterica subsp. enterica serovar Enteritidis strain CFSAN024752 SAL4654_S14_L001_R1_001_(paired)_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 663 29 100.0 32 ............................. TTGCCGTAACCCTGCCGACCACCAATATTCAC 602 29 100.0 32 ............................. CAGGACAATCCAGTAAGAAATTCAATGACCAG 541 29 100.0 32 ............................. ATAACGCGCACCGGCTTCCACCTGGCGGATAT 480 28 79.3 0 .................A..-..G..GAC | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.8 32 GGTTAACCCCTGTGGGCGGGGATAGGTCG # Left flank : AGTGGAAGATTTGAATGTGCGGGGAATGATGGCAGCGCCAAAACCGAAGCCAGACCCGGATAACCCCGGCGCGTTCCTGCCGAACGGCGCCAGCCGCAAGCGCGGGCTGAACCGTTCGCTGGCCAGTGCCGGCCTGGGCGAGTTTTTCCGGCAACTTGAGTACAAATGTGCATGGCGCGGCGTCGCGCTGCTGAAAGTTGGCCGCTGGGAGCCGTCCAGCAAGCGCCGCAGCAGCTGTGGCGAGATTAATGAATATTTGACACTGGCAGACCGCCGGTGGCAGTGCCCGGTGTGCGGCGCAGAACATCACCGTGACATTAATGCCGCGGTGAATATTGCTGCCAGGGCAGTGTAACGAATAAAAATAGGGCGCGGCCCGCCCGAATTAACGCCTCCGGACATGGCCAGTGTGCTGTGGTTGAAAGAGGAAATTTCCGCAAAAATCTGGTAGAAATTCAGGCGTTATTTTTCGCTATAGATTTCAGCCAGATGCCGCCAGA # Right flank : CTAAATCATCGTTAAGCTGCGGCACGTAGGGCCGCGGAAACTTAAATTTTAACTTGTAATAAATCCATTGTTTAATGTATTTAATTTAACTGCATGATTTAATTGATTTTAATTTACTGCTTCATTGTTTGAGACGCTTGGTGATTTTTTCCGTAACTATGAAGTTTTTTATGTGTTTTTACTAATTGATTCCATGTTGATTAACCACTCCCATTATCGTAACAATTTATACTAATGAAATTGTTGGTATTATATTCCCCTCCATATTATCACTTAAAGCCACAGCGAATAATTTTCGTAACAAGTTCACAAATGATACACACCCCTTTTTATCGTAACAACATACCGTAAAGCCAATCTTCGTAACATAGAAAACACCTATCGTAACATATTACCACAAGATATCGACACAACATATATAATTATACGCGCGTATAATTATATATGTTGTGT # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTAACCCCTGTGGGCGGGGATAGGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.90,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 469744-470382 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIOW01000004.1 Salmonella enterica subsp. enterica serovar Enteritidis strain CFSAN024752 SAL4654_S14_L001_R1_001_(paired)_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 469744 29 96.6 32 ...........................T. AGGATTTCGCCGCGCTGTTGGCCTCCAGATTC 469805 29 96.6 32 ...........................T. CCGTGCCTGTCCAGGACAAATTGCCGATTATT 469866 29 96.6 32 ...........................T. CTGCCGGTCTGTGCTGTTGTCGTCAATAATCA 469927 29 100.0 32 ............................. GCATGTGACAGTCTGATTTTTATAGCGCATGA 469988 29 96.6 32 ............................C AATTTAGGGGCCGGAACTCCGGGAAAGGCAGC 470049 29 100.0 33 ............................. CAAACACCAAGCTCTTCCGCCGCGCGTTCCTGA 470111 29 100.0 32 ............................. TTGCTCTCATTAAAGGGGTTTCCATGTTTGAT 470172 29 100.0 32 ............................. CGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 470233 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 470294 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 470355 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 96.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAAGCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGGAGGCTTTTCTACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTAGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 486535-487052 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIOW01000004.1 Salmonella enterica subsp. enterica serovar Enteritidis strain CFSAN024752 SAL4654_S14_L001_R1_001_(paired)_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 486535 29 100.0 32 ............................. ACGTTGGCTGAAAACGGTTTTTCGGTCCGCCT 486596 29 100.0 32 ............................. AATATATGGCGCTCACGCGCATGAGCATTCTC 486657 29 100.0 32 ............................. CAGGGCAAATTCATCCGCCGCTGACCACTGGT 486718 29 100.0 32 ............................. GACGCTTACATCTCACCGAGAGATTTTGAGGC 486779 29 100.0 32 ............................. GGAACTGGTTTAGCTATCGCTGCCGGGGCTAT 486840 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGGCC 486901 29 100.0 32 ............................. TCACGAGGGCCCCCTTATTGGGTCGGGCAGGT 486962 29 100.0 32 ............................. GTTGGGTTGCATAGATGACACGCTTATAAATA 487023 29 96.6 0 ............T................ | A [487050] ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATGATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //