Array 1 71432-70875 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPJD01000021.1 Mycobacterium tuberculosis strain 2631L, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 71431 36 100.0 40 .................................... CCGACGATGGCCAGTAAATCGGCGTGGGTAACCGATCCGG 71355 36 100.0 38 .................................... TAGTACGCCATCTGTGCCTCATACAGGTCCAGTGCCCG 71281 36 100.0 38 .................................... TCAATAACACTTTTTTTGAGCGTGGCGCGGTTGAGAGG 71207 36 100.0 35 .................................... CTGACGGCACGGAGCTTTCCGGCTTCTATCAGGTA 71136 36 100.0 40 .................................... GCATATCGCCCGCCACACCACAGCCACGCTACTGCTCCAT 71060 36 100.0 40 .................................... ACACCGCCGATGACAGCTATGTCCGAGTGACATCCTCCCA 70984 36 97.2 38 ..................A................. TTGAACCGCCCTTCGCGCGGTGTTTCGGCCGTGCCCGA 70910 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 8 36 99.7 39 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : TGGTGCAACCGCCGTACTCGGGCCTACGCGCCAGCCGGACCGGCTCGGCCAGCGGGATCGCGCAGACCACCAAGACGGCCAGTTTGTGCTTGGGCCGAAAGTCGAGCCGGTCGGCGCGCACCGACTCGGCGGTCCAGATGTGCAGATCCTCGATGGCGTCCAGACCCTCTGGCCGGTTAACCGGCAGTGCGGCAACAACTTTCGCTGCGGCCCGCAGTAGCACACACTCGTCGGTGCTGTCGGCGGCCGCCGGGCCCAGCAGGTCGCGGTGCTCGGGGCGAACCCGCTCGGCGTGGCTGTGCGCGACCGTCGGGAACAACAAGAACTCGTGGGCCGCCACCTCGAAGCGCTTCTCGCCGATCCCGCCCTTACGCAGCAGCACCGTCTGCCGGCCGTCCAGCAGCGCGTGCACCGCCGCGCTCCACTCCTTCAGCGCTGGCGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TACGACGACTGGGTCGCCACCGCGTCTGTTGACCGGCATTCAGGATGAGCATGATGGCGGCGTTGACGGTGAGGACGTTTGGTCATGAAATGACCCCGCCGGGAGATGTCCGGCGGGGTCGGTGGTGTTCGGGGTGTCGGTGTGGTGTTCAGTCTGCCGTGACTTCGGCGATGGCGGTGCGGGTGGTGGATTCGTCGACGATGGCCTTGTCGGCGGCGAAGGCGGCGACGAGGGCTTGCAGGGCGAGGTTGTTGACCGCGCGGGGGTAGCCCCGGCTGGTCTGGTGGATCAACCCGATGGCGTCGTCGGAGAACAGGGCATCGTCGCGTCCGGCTAGCTTGAGGTGGTGGCGTAGGTAGCTGCCGGTGTTGGTGTCGGTCATGGGCGGCATGGCATATCGGAGTCCGATGCGCTGGTCAAGCGCGGCGAGCACGCCGAGTTTCATCCGCCGCCGCAGGGTGGGTTGGCCGATGAGCAGGCAGGCGAACGGGCTTGACGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 2 81687-81357 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPJD01000021.1 Mycobacterium tuberculosis strain 2631L, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 81686 37 100.0 33 ..................................... TAGAAGGCGATCACTGGAAGCACGGCGCTTGCG 81616 37 100.0 35 ..................................... TTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAA 81544 37 100.0 40 ..................................... ACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTAT 81467 37 97.3 37 G.................................... GTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTA 81393 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 5 37 99.5 36 AGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Left flank : GGAATCCCATGTGCTGACAGCGGATTCGCGGGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACATGGGATATCTGCTGCCCGCCCGGGGAGATGCTGTCCCGGGTCGTCAGGACCCAAAACCCCGAGAGGGGACGGAAACCAGGTGAGCAACGGCGGCGGCAACCTGGCGGCCACGGGTCGGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACTCGAAATCCAGCACCACATCCGCAGCTGCGGCATGCTCCCGTAGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACCTTGAATAACGCGCAGTGAATTTCGCGGATCAGGACCCAAAACCCCGAGAGGGGACGGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCCCCTAGCCACGCCTGCCGTGCCATGCCGCGCCGCG # Right flank : TCTATGGACAATTCGTCCAGCGTGTGGTAACAATGCCTGCTGATGATGTCAAAAGAACACAAACTCCTCTGCGCTGACAAGCCGTCCCCTTCCGTAGAACGTAACTGCCGCAACACCTCTTATCTTATAGATCCGGATGTTGTCGCAGTCGATGGCGAAGCGGTCGATACGTGCAACTAGTTTCGCGAGCTGGCCCTTCGTCAGCATCGCTTCGAATGCGGACTCTTGGACGCGATAGCCAAACCCGGCCAGGATCTTCGCAAGTGAAGCCCGCCGCCGGTTGTCGCTGATGTCGTATATTACGAGGACGAACATCTTGCCTATAGTGCCGCTGGACTCGTCCACTTTGAGCGGGAGATTGAAGTACTCCTCACGGCTGCGAGTGGGCATTTAGGCTCCGGATGGCTCGGAGGTGATATCGATATCGACGAGCCGCGACGGGTGCCCGGCTTCGATAACACGCACGAGGCTTTGCAGTTGCAAGTCGAGGGCGTACTGAA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 3 82664-81825 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPJD01000021.1 Mycobacterium tuberculosis strain 2631L, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 82663 29 100.0 43 ............................. ATTTCGACGACAATTCGTTGACCACGAATTTTCAGAGTCGTCA 82591 29 100.0 46 ............................. ACATCCCACGCGTTACCGCTGGCGCGCATCATTCATCTAGTCGTCA 82516 29 100.0 44 ............................. TCGCGGCGCGGCATGGCACGGCAGGCGTGGCTAGCGGGTCGTCA 82443 29 100.0 45 ............................. GCGTGAAACCGCCCCCAGCCTCGCCGGGGCCGCCTGGGTCGTCAG 82369 29 100.0 48 ............................. CAGGTGAGCAACGGCGGCGGCAACCTGGCGGCCACGGGTCGGTCGTCA 82292 29 100.0 44 ............................. TACACCACGCGTCGTGCCATCAGTCAGCGTCCTCCTCGTCGTCA 82219 29 100.0 42 ............................. ACTCGGAATCCCATGTGCTGACAGCGGATTCGCGGGTCGTCA 82148 29 100.0 48 ............................. ATGGGATATCTGCTGCCCGCCCGGGGAGATGCTGTCCCGGGTCGTCAG 82071 29 100.0 48 ............................. CAGGTGAGCAACGGCGGCGGCAACCTGGCGGCCACGGGTCGGTCGTCA 81994 29 100.0 50 ............................. TCGAAATCCAGCACCACATCCGCAGCTGCGGCATGCTCCCGTAGTCGTCA 81915 29 100.0 33 ............................. CTTGAATAACGCGCAGTGAATTTCGCGGATCAG Deletion [81854] 81853 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================== ================== 12 29 100.0 45 GACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : TGTGGCTTCCCGTGTCGCGAAGACGGCCCCCGTGTCGGAGTTCTTGCTGAAAGCCCGGGTGTCGACCACACCGTCCGCGATCAATCGAAGTACGGTGTCATCGATGATCGGCGCCCGCCATACCTCCATGAGGTCGCTCGCCAACGTTGCGTGCCCTCGTGAATCCTGGTGTAGGAAACCGATATACGCGTTCAGGCTGTGACGCTCGATCGCCCCTATGATGTTCTTGTACAGCAGCGAATAGCCGAGGCTGACCATCGAGTTGAAGGCGTCCAACGGCGGCCGAGTCGAGCGGCCCTGGAATGCGAACTCCTGCGGGACGAGATGCCCCAGCGCGGTGAAGTATGCCTTTGCGGCATTTCCCTCGAACCCGTTCAACTCCGCCAGGGAGCCCGATCGATCGACCCAGGCCAGCGAGTGCTTCATCGTGCGGATGCTCTCAGCAACGTCTTGCCCCGACGTGTGTGCCCGAATCAAGGCCTGCTGATTCAGNGTCGTCA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCCCCTAGCCACGCCTGCCGTGCCATGCCGCGCCGCGAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTAGAAGGCGATCACTGGAAGCACGGCGCTTGCGAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACGTGCAAGAATTCCGGGTTGCAGTGCAACACGGTTTTAAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTCTATGGACAATTCGTCCAGCGTGTGGTAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 4 83743-84445 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPJD01000021.1 Mycobacterium tuberculosis strain 2631L, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 83743 36 100.0 38 .................................... TTAAAACCGTGTTGCACTGCAACCCGGAATTCTTGCAC 83817 36 100.0 41 .................................... CATAGAGGGTCGCCGGCTCTGGATCACGCTCCCCTAGTCGT 83894 36 100.0 36 .................................... TTTTTGCCTCATGCTTGGGCGACAGCTTTTGACCAA 83966 36 100.0 34 .................................... TCGCAAGCGCCGTGCTTCCAGTGATCGCCTTCTA 84036 36 100.0 36 .................................... TTTTTGCCTCATGCTTGGGCGACAGCTTTTGACCAA 84108 36 100.0 37 .................................... TCGCGGCGCGGCATGGCACGGCAGGCGTGGCTAGGGG 84181 36 100.0 42 .................................... ACATAGAGGGTCGCCGGCTCTGGATCACGCTCCCCTAGTCGT 84259 36 100.0 42 .................................... ACAGGTGAGCAACGGCGGCGGCAACCTGGCGGCCACGGGTCG 84337 36 100.0 37 .................................... TCGCGGCGCGGCATGGCACGGCAGGCGTGGCTAGGGG 84410 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 10 36 100.0 38 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : TTCAGTACGCCCTCGACTTGCAACTGCAAAGCCTCGTGCGTGTTATCGAAGCCGGGCACCCGTCGCGGCTCGTCGATATCGATATCACCTCCGAGCCATCCGGAGCCTAAATGCCCACTCGCAGCCGTGAGGAGTACTTCAATCTCCCGCTCAAAGTGGACGAGTCCAGCGGCACTATAGGCAAGATGTTCGTCCTCGTAATATACGACATCAGCGACAACCGGCGGCGGGCTTCACTTGCGAAGATCCTGGCCGGGTTTGGCTATCGCGTCCAAGAGTCCGCATTCGAAGCGATGCTGACGAAGGGCCAGCTCGCGAAACTAGTTGCACGTATCGACCGCTTCGCCATCGACTGCGACAACATCCGGATCTATAAGATAAGAGGTGTTGCGGCAGTTACGTTCTACGGAAGGGGACGGCTTGTCAGCGCAGAGGAGTTTGTGTTCTTTTGACATCATCAGCAGGCATTGTTACCACACGCTGGACGAATTGTCCATAGA # Right flank : CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACACGTTGGAAGCGTTTCGAGCGTACGGACTTTCCGGATGCAGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTGGCGATTTACGACGCTGACGGGAACTCGTGCGAATGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGATCCGCGAAATTCACTGCGCGTTATTCAAGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCCGAGCCGACCATCCGCATCACACCGAAAGGGTTGGCGCAAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACACGTGGGGAGAGGGAATGGCAATGATGGTCGACGAAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 5 85021-84554 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPJD01000021.1 Mycobacterium tuberculosis strain 2631L, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================= ================== 85020 32 100.0 44 ................................ ATGGGATATCTGCTGCCCGCCCGGGGAGATGCTGTCCGAGGTCG 84944 32 100.0 40 ................................ TTCGTCGACCATCATTGCCATTCCCTCTCCCCACGTGTCG 84872 32 100.0 45 ................................ TTGCGCCAACCCTTTCGGTGTGATGCGGATGGTCGGCTCGGGTCG 84795 32 100.0 29 ................................ CTTGAATAACGCGCAGTGAATTTCGCGGA Deletion [84735] 84734 32 100.0 40 ................................ ATTCGCACGAGTTCCCGTCAGCGTCGTAAATCGCCAGTCG 84662 32 100.0 45 ................................ CTGCATCCGGAAAGTCCGTACGCTCGAAACGCTTCCAACGTGTCG 84585 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ============================================= ================== 7 32 100.0 41 TCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : GTC # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCCCCTAGCCACGCCTGCCGTGCCATGCCGCGCCGCGAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCGACCCGTGGCCGCCAGGTTGCCGCCGCCGTTGCTCACCTGTGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACACGACTAGGGGAGCGTGATCCAGAGCCGGCGACCCTCTATGTGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCCCCTAGCCACGCCTGCCGTGCCATGCCGCGCCGCGAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTTGGTCAAAAGCTGTCGCCCAAGCATGAGGCAAAAAGTTTCCGTCCCCTCTCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA //