Array 1 108071-104801 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFHK010000003.1 Streptococcus suis strain K40-WJ Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 108070 31 100.0 34 ............................... AATATCAGAAAATGGTTTCATGGTAACTCCTTAG 108005 31 100.0 35 ............................... AAGACTTTGTTAGTACATTGATGATGGAAAGCGGG 107939 31 100.0 35 ............................... GTTCTTCCCTGGTACGAAAGTATCCAACGATGTCG 107873 31 100.0 36 ............................... AGTCTTATTGAATTACAGAAATTTATGAATAAGCAG 107806 31 100.0 35 ............................... GCCAAAGTTGCGTTGATTCAATTCGCAGAGCAAGG 107740 31 100.0 36 ............................... AGTTGAAAATAAATCAATCTTCCAAATACTCTATCG 107673 31 100.0 36 ............................... ATTCGACAAATAGCGATAATATACCTCATAGTCTTG 107606 31 100.0 36 ............................... TGCTAACACAGGTCGTGATGCCAAAAAAGAAATTAG 107539 31 100.0 35 ............................... CGTCCGCAGCTGTTCCACTACTTCCACCAGCAGAG 107473 31 100.0 35 ............................... ATAATCATCATCTAACACAGTCTGGAAAGGACGAG 107407 31 100.0 35 ............................... ATAACTACCTTGAATTTTTGAAACAGTATCAGCAG 107341 31 100.0 34 ............................... ATTTGAGTTTTAACAGTCCACATGTCTAAATTAG 107276 31 100.0 34 ............................... TACTACGTTTGGTTGGATAGAAGTCCACTTTGTG 107211 31 100.0 40 ............................... ACACAAATACCTGTTGGTATTCTTCCTTATAAAGGTCACG 107140 31 100.0 35 ............................... ACACAGAGGAAATCCACCACAAGGGCTTGGAAATG 107074 31 100.0 35 ............................... TCAACTACATTAGAAAGGTAATAAAATGGAAAACG 107008 31 100.0 37 ............................... CCGTTAAGCTTTATCTTATCAGGATTGGTAATACGAG 106940 31 100.0 36 ............................... ACTAGTCAGCCGATGGATATTACTGATGATGGATTG 106873 31 100.0 36 ............................... GATGCAGAGGAGGTACTAAATGACTAACGAAAAACG 106806 31 100.0 36 ............................... AACTATACAGTTTAAAACAACGTTAGAACGTGATAG 106739 31 100.0 34 ............................... TGTACCTACAATTGTTACTTCCGAATCTACCACG 106674 31 100.0 35 ............................... TGTGACTGAACATAACAGTCGGACGGTTGATTATG 106608 31 100.0 35 ............................... TTGTTTTTGAAGTTACGATTAACGGCAATAGTACG 106542 31 100.0 34 ............................... ACACACCTGAAAACAAATTTCATTGTTTAACCGG 106477 31 100.0 35 ............................... AACATCAAATCACGAATTTTAAATTTTGTCAAGCG 106411 31 100.0 35 ............................... GGAACTGCTAATGTAGTCGTTACTGATCAAGCCTG 106345 31 100.0 34 ............................... CAATGTCATATATAAATGCAAACCTAGAAGTGAG 106280 31 100.0 35 ............................... CGGTAAAAATTGCCGAATACATAGCTTGGTAAAAG 106214 31 100.0 33 ............................... ATCCAAACGGACCCCGTATTTTTCCATATCAAG 106150 31 96.8 34 .......................G....... CAACGTATTGCTTCTTCTAGTGCTAGTGCTAGTG 106085 31 93.5 34 ..........C............G....... TACTATTGTAAAACTTTTAAACAGAGTAGCAAGG 106020 31 93.5 35 ..........C............G....... AAGCAAGTTCCCACTTGGGCTGTTGGTCATGGCAG 105954 31 90.3 35 ..........C.......T....G....... TGAATCGTCAAATGATGGCGGCTTTGTCGGAATTG 105888 31 93.5 36 ..........C............G....... AATGGGGGCTAGGTCTATTTGGTCTTACTAGTCGCG 105821 31 93.5 34 ..........C............G....... TCCTTTAAATAATTCCAACAGTTCTTGCTTTTTG 105756 31 93.5 35 ..........C............G....... AGATACAAAGGCGCAAGCTGTTGTTTCAGAATTTG 105690 31 93.5 35 ..........C............G....... CTAGCGAGGGGGCAAAACTAGACATTACTCCATCG 105624 31 90.3 33 ..........C........A...G....... TTGCCCTTGTATTCAAAAGGCATAGTCATTCTG 105560 31 93.5 35 ..........C............G....... AATCAGTGTAGCATACTGTTTCAGATGATAGAAGG 105494 31 93.5 37 ..........C............G....... ACTCTCTGTCTCCTTTATGGTATAATGTATGTGAGTG 105426 31 93.5 34 ..........C............G....... AATCCTTCCCAAACGTTTATTGTGTTGTTTAAGG 105361 31 93.5 35 ..........C............G....... GCTTTTTGAACCAGCCAGCCGTTAGACTTTTCCAG 105295 31 93.5 36 ..........C............G....... ATCATGCAACTTGTCAAGTAGATAAGGAGCGTCCGG 105228 31 93.5 36 ..........C............G....... CACAAGATGTCTGGACAGAAATTAAGGCTTATATTG 105161 31 93.5 35 ..........C............G....... GAGCGCTTTGGTATTAGCTTGACCGATGGATTGAG 105095 31 80.6 34 ......T.TTC...A........G....... CACATATAGCGAAACAATCGCACGCTATCATGCG 105030 31 80.6 35 ......T.TTC...A........G....... AGCATTTCCAAGCGTAGCTTGGAAGAAGTGATTGG 104964 31 80.6 35 ......T.TTC...A........G....... GGGCAGATGTTATGTCACAAGCGCAGACTATACTG 104898 31 80.6 36 ......T.TTC...A........G....... CCTGCTGTCAAGATGTTGGACCACCTCCTCACCGTG 104831 31 74.2 0 ......T.TTC...A..A.....G.....G. | ========== ====== ====== ====== =============================== ======================================== ================== 50 31 95.8 35 TCGCACCCCATACGGGTGCGTGGATTGAAAT # Left flank : CAAAGGCTATTCGAGGCGAGTTGGACAGTTATCCTCCCTTTATGATATAGGGGCTATATTATGATGGTATTAGTGACTTATGATGTCAATACAGAAACAGCAGCTGGACGAAAGCGGTTGAGAAAAGTAGCCAAGCTGTGCATTGACTTTGGACAACGTGTGCAACATTCTGTTTTCGAATGTTCAGTCACTCCAGCAGAATTCGTTGAAGTAAAGAATAGATTATTGGAAATCATTGACAAGGAACAGGACAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGGCGAGATACTAGTTATGATCCAGATCAAGGAGTCCTTCTGTTATAGATTATCTCTGCGAATCGGGCTCACTCATTAAATGTGGGGAGATTCGCGTGAAAAGCATATGAAAAACAGTGAAAATAGAGTGAATTTATGGTATATTCTATATCTGTAGAAACTTTATTTTTATAAAACAGTGTCAAATGGCACTG # Right flank : AACGTATCGACAGACTAGCTGCTCGGACGGACCGGTTGTACTCTTTGCGTATGCGTAGGTTGAAACTGTTTTGGCTTAACACAGTATATCTGGTATGGACGTGTTCGAAGTTTTCCTCCTTTAACTCATCTCCCCCACAATTTTCGAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACTGCATACTATTTCGTGCAGGAGATTGGTCGTCGGGTTGCGGAAGAGGGCTTGCAGATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCACTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGAGACTTCAATGGGATTAAA # Questionable array : NO Score: 8.97 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCATACGGGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACCCCACACGGGTGCGTGGGTTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //