Array 1 15990-17071 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJCD01000034.1 Planktothrix agardhii CCAP 1459/11A strain NIES-905 sequence009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 15990 37 100.0 36 ..................................... TGCCAAAACGTAAATTTTTAAACTTCTACCTAAACT 16063 37 100.0 41 ..................................... TTTATGCTTAATTGGGCTATGGAAGCCTCAAAGGATGGTTT 16141 37 100.0 40 ..................................... ATTGAGCTTCAGCTATCCGTCAATAGTCGTTACCACTGAG 16218 37 100.0 38 ..................................... ATCAGAGGACGGTTATGATACGGGAGAGGGAAATTTAG 16293 37 100.0 42 ..................................... TCAAATTCAATCGACAATCAAAACTGAAATCATCTCAAGCTA 16372 37 100.0 38 ..................................... GATCAGGTCTTGCCAGAGGTGGATCAGGTCGTTGAGGA 16447 37 100.0 36 ..................................... ACCGACCTTTTATGGTATTGGCTGATACTTTATCAA 16520 37 100.0 38 ..................................... ACAGAGATCATTTTGATAATTCCAAATATCTACAACAA 16595 37 100.0 35 ..................................... AAACTCGGTAATATCAATTCTGGGTATGGGTTCAA 16667 37 100.0 36 ..................................... TTCGTGCTAATGATGTTTTTGTCTTGGCAGTTTTTA 16740 37 100.0 34 ..................................... ACTCGACTAATGGCATTCTCGGAGTCTAGGAGAA 16811 37 100.0 38 ..................................... CCTAACGTGCATCAAAGCGCCCTAACCCCGGAAAACTT 16886 37 100.0 38 ..................................... CAAAATTTAACAATTTATTGCAAGAAAATATAATGGAT 16961 37 100.0 37 ..................................... TCATTCTCACAACCCTTTGATCAATACATTGAGCAAA 17035 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 15 37 100.0 38 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : ATTTTCAAGTTCAATCTTAAAATGCGTAGGAAGATTGAAAAAAACTAGAAAAAACGACTTAAAGTTCCTCAAATTGTAAGTTAGATCAAAATTAGATGAAATTTAACAAAACGTAGGTATTTATTTATAGTTACCTACGTTTTGTTGAAAAAACAGCTAAATTGCCAAGCACTTTTTTCAGATATTTAATTAATCTTGACCAACTCGCATAATAATCGACTTCAATCCATTCATAATATCCTCAAGAGATTCAATAATTTTTAAGGTTTCTTTTTGTTCAGTTTCATCATCTAATTTAGACAAAAATTGAAATAATTGGTTAATTCTTTCTTCTTTTCTTTTTCTTTTTTTAATTATTAACTAATAGTTTGAGCTAACTCCAGTGGGAACGCCAGGGCTGTTTCATCAGCCAAAATTTATGTACAAACAAGCTAAAGATCGTTGATATTTTCGGCTATCATTCTTTGAGTCATTGTCGAAGAATAATAGCCATTAATAAG # Right flank : GTCTGCCGTCTGAAACCCTGATGGGGCGGTGATTCTGGAGCCCATTTTCGTGAACCTCAAAAATTGCCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGACTCAAAAGTATAAACTATTGATTTGTCAAGGTTCTAGCGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCATGAAAATAATCATAAACCAAAACAATTTTCTTGTCAAGGGGAATCTTATATGATATTGCGATCGCCCCCAGACCCCTGACCTCAAATAAAAAACCCCGCCTCCAACGGAAACAGGGTCAACGGTATCCTATTCAATTCAACTAGATGACAATAGCCTGATCTTGACGGGGGTGTTCAGACCCATAGGTAATTGTGCGTTTCAAAGATCCCGCATCCAAAACATAAATCCGTACCGAATCTTCAGCAGGTTTAACTAACTTTTCAATTTGGTGTTGTAAGTTCACAAACTGAACACTTGTTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 1 99677-98461 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJCD01000035.1 Planktothrix agardhii CCAP 1459/11A strain NIES-905 sequence010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 99676 37 100.0 35 ..................................... TGTATCAATTTTTAAGATTAAGTTATATCTCAAAT 99604 37 100.0 36 ..................................... CGAGTGAGGCTTCCGAGCGAGACGGAACGGCAACCA 99531 37 100.0 37 ..................................... CAAAAGCCGACCGACCAACACCAAACAAACCGGAAGA 99457 37 100.0 36 ..................................... TCCTAGTATTCAAAGAGGGAATATCAGGATATATTT 99384 37 100.0 37 ..................................... ATTAGTTAAGAGTCGGTGCGTCTGCGACGATTATAAA 99310 37 100.0 36 ..................................... TTGACGTGGTTTTGTGCGATCGCTTCACCCCGTCAA 99237 37 100.0 39 ..................................... CTTGACCGCATCATCAAAACTCCATTCCCCCATACGTTT 99161 37 100.0 36 ..................................... GGGAATAAAAGTTAATTCCTGTGTTATGGAATTATA 99088 37 100.0 35 ..................................... CATTAATATTAAGTCTAAACATTAGAACACAAGGA 99016 37 100.0 37 ..................................... TAGTGGCCCCCCTGGTTTTCAACCTACGGGGCTTCCT 98942 37 100.0 39 ..................................... TCTCCCGACTAACTTCTAAGTCATTATCTCTCAGGAATT 98866 37 100.0 34 ..................................... TGTACAGTCAATTACAGCCGAGCTACATTATGAC 98795 37 100.0 38 ..................................... ATTGGCTTTCTAGTTTGCGGTAATCTTCAATCTTTAAA 98720 37 100.0 36 ..................................... TAGGACTTGAGACAATGAACGATTACTACATGATGT 98647 37 100.0 37 ..................................... GAGAAAGCGTTGGGACGGTGCGATCGCTTCATACTTC 98573 37 100.0 39 ..................................... TATAATTAAATAGTAAACATGGATTGACGCTCTAAAAAG 98497 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 17 37 100.0 37 GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Left flank : TATGTTTCAGTCCCGCAAGTGGGATTATTTTAATTGAAAGAAAAGTTTTCGGCGAATATAATTCGCTACTACAGAAACAAAGTCCACCTGCGTGGACTAATAAAAATTAAGGTTTTTGAACCCACGCAGGTGGGTTTTGTCTGTGTAGCTGCGATTTCTAATCGCCAAGAAAAGAAAAGAAAAAAAAGTTTTCGGCGAATATAATTCGCTACTACACAAACAAAGTCCACCTACGTGGACTAATAAAAATTAAGGTTTTTGAACCCACGCAGGTGAGTTTTGTCTATGTAGCTGCGATTTCTAATCGCCAAGAAAAGAAAAGAAAAAAAAGTTTTCGGCGAATATAATTCGCTACTACAGAAACAAAGTCCACCTACGTGGACTAATAAAAATCAAGGTTTTTGAACCCACGCAGGTGAGTTTTGTCTGTGTAGCTGCGATTTCTAATCGCCAAGAAAAGAAAAGTTAAGATATCCTTTTCCCCTAGAACAGAGTGATCT # Right flank : TCTGCCGTCTGAAACCCTTATGGGGCGGTCATTCTGGAGCCCATTTTCGTGAACCTCAAAAAATGCCTCATTTCAGGCTTCGTTATTGCAACAGATTATCAATAACTAACCGGACTCAAAAATATAAACTATTGATTTGTCAAGGTTCTAGCGTTTTTCGTGAACCCCCCCAGGTTTTCGCCCCCGCTTAGGTTCACGAAAATAATAATAAACCGAAACCCGCCGCTTGTCAAGGGGAATATTCTATGATATTGCGATCGCCCCTAACCCTTAACTTTTAACAATTGCCCCAAAATCCGCCAAAACCCGGGCATGATTTCTTAATAATCCCAATAAATTCAAACGATTACGTTGAATATTGGGATCATCATCCATCACTAAAACACTTTCTGGGCCATCAAAAAAGCTGCTCACCGTTGGGGTAATTTCTGCTAAGGCTTCCACCAATTGACGATAATTTCTGGTGGCTTGAGAAGCTTTTGTTTTAGGAACTAACTGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGCAAGCAGGATTATTTTAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 16347-13375 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJCD01000032.1 Planktothrix agardhii CCAP 1459/11A strain NIES-905 sequence007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================================================================================== ================== 16346 36 100.0 35 .................................... CTCAACTCCAAAAGTCAATTCTCCTTCTGCTGTAG 16275 36 100.0 38 .................................... TTTAACAAAGCTGGCACTTTCTTTAACACTCAAAGGCA 16201 36 100.0 45 .................................... ATCTTGGTAGACTACTCCATCTACAGTAGCAAGTTTACTGGTATC 16120 36 100.0 48 .................................... TAGTGGCCTAACTTGATACTCAAAGCACCTTTAGTAGCTGTGTAACCA 16036 36 100.0 43 .................................... CAAGCAGGCAGAAAGGTTCATTGAATCTCTGCTATAAACCCTT 15957 36 100.0 41 .................................... ACTGCTTGTTGTTGAATATAAGTAGGACGAGCAGTTGCTAA 15880 36 100.0 41 .................................... AGGAGCATTAATGTATGTTTAATCCATTTCATAGTAAGAAT 15803 36 100.0 41 .................................... AATAATTGATTTCATGGTTTTAATTCCTGACATGAGTTTAC 15726 36 100.0 48 .................................... TATCGAGCACCCATTCTCCGTTCAAGTCTACTTCCTTGTGGAAATCAA 15642 36 100.0 102 .................................... TTAAAATTAGTCATCGGTCTGGATGTGCTAGTTGTAATTCTCAAGAAACCACAGGCATTAGCCTTTGAAGTAATGGTTCTCGTTGAAGTTACGTTAACAGAA 15504 36 100.0 37 .................................... TGTCACGGGGACGTTATTATAAATGCCATTGAATGGC 15431 36 100.0 39 .................................... AGCTTTGAGGAAAGGAATGTCTTTCCCATGTTTACGCAT 15356 36 100.0 41 .................................... GCATGGCGTGGTGAACTCAAGAAGCTTGCTAACGAGTTTGA 15279 36 100.0 33 .................................... ATATTTAACATAACCTGATCCAATCTTTCTACA 15210 36 100.0 43 .................................... TACAACAGATTGTTTGCTAAAACTTTCATTTTTTTACTTATAA 15131 36 100.0 49 .................................... TGATCCGATGATCGCAGTAACCAAGGCTGTGTTAATGACAGCTTTTATT 15046 36 100.0 36 .................................... TAGCCGCAAGGTCTTTATTCCTAATTCCAGACCAGG 14974 36 100.0 44 .................................... AATGCCCGTTGATTCCGTTGCTCGAAGTCAACCTTTTCAGTTAA 14894 36 100.0 43 .................................... TGCCATAGTTAGGGAACTCGGGCAAGAGTACAGTAAATAAAAT 14815 36 100.0 37 .................................... GTTCTGATTCTATTAACTTCTGTTTCTTATCTTCGAT 14742 36 100.0 37 .................................... ACTTCCATAGAATAACGAGCAACAAAGGATACTTTTA 14669 36 97.2 39 ...........C........................ ATTCTTCTGCCTTTTTTACGGCATCACAGAACTTATCAA 14594 36 97.2 45 ...........C........................ TTTACCTTGTCTTACATATACTAAAGCATCCTTTAAATCCTTCAT 14513 36 97.2 37 ...........C........................ AAGAACGTTGTCAGGGGTTGTAGCTGTAGATGTAGGT 14440 36 97.2 41 ...........C........................ ACATAACGTGCCACGTAATCATTAACTCGATTAGGTTTGGG 14363 36 97.2 50 ...........C........................ AAAGGAGGTCGTCAAGTTATCTTGACCTTCATCGAAGGGATGGATGGTAA 14277 36 97.2 41 ...........C........................ TTGGCGGCGTGGCAGTTTATTTGTTATCAGAGAATCAACAA 14200 36 97.2 47 ...........C........................ TTCTTAACCTCGATAATTTCCGATATCGTCTTCCCGATATCGCTCTC 14117 36 97.2 41 ...........C........................ GTAGTCCGACACTTACTATTGCAATTTGGCATCGTATCATT 14040 36 97.2 41 ...........C........................ TATGTTTTGAAGTTTGTTCAACGGAAATCATATATTTTGGA 13963 36 97.2 46 ...........C........................ TTGATATCAATAATCATATCATTAGTTAAGTTTAAGCTAGGAGACT 13881 36 100.0 41 .................................... ACCAAATCGTATGGTCAGTGCCCCCTTTGTGGCTGTATAGC 13804 36 91.7 43 ...........C........C.......A....... ATGTTTTGAAAGAGGTTAGGGAGTGCGATCGCAATGCCAACAA 13725 36 91.7 46 ...........C........C.......A....... TTCGATCATCTTCCCCTGTAACATACCAAGGATGAGTAGGTTTCCC 13643 36 91.7 47 ...........C........C.......A....... TTAGAATAGTTGCGCAATAACCAACCTAAGTTTTTTACTTCTTTAGT 13560 36 91.7 37 ...........C........C.......A....... AATTTTCCGGTCGGTGTATTCGGCTTTGACTAGGACT 13487 36 91.7 41 ...........C........C.......A....... TCTTAGAACTTTTATCATTCTTGGTGATTTCCGTTACAGAA 13410 36 91.7 0 ...........C........C.......A....... | ========== ====== ====== ====== ==================================== ====================================================================================================== ================== 38 36 98.0 43 CTCCCTACTCGTTAGGGAAATTAATTGATTGGAAAC # Left flank : TTGAAGGATATAAACCTTATGAAATTCGCTGATGTTATTTTACATTGTCGCTTATGATATTCCCTGTGATAAACGTCGTCGCAAAGTGGCGAATTTATTGGAAGGATATGGGAAGCGGGTTCAATATTCGGTGTTTGAGTGTGTGTTAGCTCAACCAAAATATATTGAGTTACAGAAACGCTTGAAAAAACAGGTGAATCTGGCTGAAGATAATCTGCGGTTTTATCCGCTTTCCCGCCATACCTGGGGAAGTGTGGAAACTTGGGGTCAGGGGCCAAAGATTACTGAGTATCCGAGTTCAATAATTATTTAGGGTTGCTGGCGAGGCTTAGGCAAAATCGCTATAATACCGATTCTGCTGTTTATAGCCTCGCTATCCCTCTGGATATGGGTTCTGACGTTTTGATTCAGGAGTAAAATCTTGTTTCAGCCAACTGTTTTTCTGAGCCCCGCAAACCCCCCCTAGACAACCGATGGCGTCTGGGTTTAAAATGGGAGGA # Right flank : GCTAAGACAAAATTAGTGGAAGTTTTCTATTAATATGAGAGGTAACTGTTGACAAAAAGAGTAGATTTCGAGTAATATAACTTTGGGAGGCCGCTCTACCGCATAGAAACAAGGTCTCCATAGCAGTAAAGGCAATTCCCCAGCCGAAGGGTTACGGCAAATTCCTTTGTCATTACCTAGAAATAGGTAGTTAAGACAAAATTGGTCGAAGTCTTTTATTAATGCGGAAATCGAAAAGGCTTCGACTCCACTCGACTCCGCAAATAGGAAAAAAATCAGAGACTTCCGTAGCGACAAAATCTCTAACTTTTCAACTTTTGAAAAACTCCAAACACCCTTTTAAAACTCAGATAAATTTACTTTCCCTACTCGCTAGGGAAATTAATTGATTCCGATCTCACTAAAAAAAAGCCCCAGTTTTTACTAGAGCTTTAGTGGTTAAATATGGTTAGGTGTAGAAATAGGGCTTGCTGAAAAAGTAACAGAAAAGGAACAGAATG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.15, 8:1, 9:0.93, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGTTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 27478-28440 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJCD01000032.1 Planktothrix agardhii CCAP 1459/11A strain NIES-905 sequence007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================== ================== 27478 36 100.0 36 .................................... GAAAGCCCAGGGGCTTTTTATTCCAGCAAACAGTCC 27550 36 100.0 43 .................................... TGATTCACCTTGGCTGGCTCAACCCACCAGCATCAACGACCCC 27629 36 100.0 36 .................................... TTCAAACTGTTTAAGTTCGGCTTCGCTAAATAATTT 27701 36 100.0 43 .................................... CCCTTCTTCAGCAGAAGTTCCTGCAGCAACAAACCGATAGGGA 27780 36 100.0 48 .................................... GTTGCCATTCTTCTTGCAGTTCAATTGCTCGTTGAGCAGCGTCTACTG 27864 36 100.0 42 .................................... TTGTGAACTCCTAATTTGTTTCTCATGTCATGTATCAATTAT 27942 36 100.0 40 .................................... TTATTAATTTCGTCATAGGGGTTTTGAACTTTCGACCGGA 28018 36 100.0 42 .................................... AGTTCATACACACATGAAACTATATCCTAATCAGCCAATGGG 28096 36 100.0 42 .................................... AGTAAAGGAATGTGAGACTTGTTAGGCGGAATTCCCCTCCCT 28174 36 100.0 50 .................................... TCAGAATAAAAACACTATAAGAAGGATTAAACCCCTTCTTATTTTCTTTA 28260 35 88.9 3 ........................-A...C....G. GCA G,G,CT [28283,28290,28293] Deletion [28302] 28302 35 80.6 66 ACAA......-...............C...A..... ATTAGATTATTGTAAAAATCCTCATTGATTGGAAACGTCAACCTAATTCGTAATTCGTAATTCGTA C [28305] 28404 36 77.8 0 A.T.A...........A.............C..TCG | C [28433] ========== ====== ====== ====== ==================================== ================================================================== ================== 13 36 95.9 41 CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Left flank : AACAGTTCTTTTAATCAAAACGTTAGAGCATATTGAGTTGATTCACTAGACTTAACAGGATTTGGCAGGTTTGTTAAATCTACGGATTTAACCGATGTGATTCTCTCAGCACTTAACTATTTACTGACTTTACCACCCTGTGATACCTTATGTCTTGGATTTCACAATATTTATGGTTTAAGTCACAAAACTCAATAATCCTTAAAAAATCTACACTTTTAGAGCAATATTGGCTGAATACTTACAATGAACTAGCGTTGAGCGATGTTGCTAATTGCCTCGTTAGTTCAATCTAGGGAACACCTCCCTATAGGTTTTTGCGAGGCTGAAGCTTGAATGTCTATGATATTGATTCTGCGGTTTATAGCCTCGCCAGTCCTTCCTGTAATGGTTCTGACGTTTTAATTAAGGAGTAAAATCTTGTTTCAGCCGATGAAATTTCCGCAGCCTCGCAAACCCCCCCTAGACAACCGATGGCGTCTGGGTTTAAAATGGGGGGA # Right flank : GCACTAAAAAAAAGCCCCAGTTTTTACTAGGGCTTTAGTGGTTATAGCAGTCGCCAGACCTATTAGGACAAAGAGTGATGCAGCAAAGCTAGACGGTGAAGTCTTTTTATCCGGTGTTCCCTCCCCCCCTAGCCCCCCGTGCACGGGGGGCTAGGGGGGGCTGTTCCCTGCTATAAATATGGTTAGGTGTAGAAATAGGGCTTGCTGAAAAAAGATGAAAAGCCGAGAAAGTCTGGAGGAGGAGAGGGCAGAAAGGGATAATGGTGCAAGGAATTAGTGACAAAAAGTTAATTCAGATTTTATTGACCTTTGCCTCCAGATTTGCTTTTAGCAAAATAAGTCTGAAACATTGCCTTAGCAATAGGAGCGGCGGATTTAGATCCATAACCCCCATTTTCCACCACGACCGCGATCGCAATTTCTGGATTTTGGGCGGGGCCAAAAGCCACATATAGGGAGTGATCGGTTTGTCCCGATACCTCCGAAGTTCCGGTTTTACC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.40, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCTACTCGCTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //