Array 1 64505-63561 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBKV01000024.1 Escherichia coli strain Aut2013_WWKa_NEU_44 Cont024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 64504 29 100.0 32 ............................. TCGGCTCGTAGAAATGCAGATTCGCCGGATTA 64443 29 100.0 32 ............................. ATAAAACAACAGGTGAGTTGGGTTTTGAGTAT 64382 29 100.0 32 ............................. TGGCTCTGTTTTTGCGACAAGCGCAAGGTATC 64321 29 100.0 32 ............................. ACAATCAGATCACGATCGATGCCTCGCGTGAG 64260 29 100.0 32 ............................. ATTTTCGCAGCGGGTAACCGCGCCCGGCGATC 64199 29 100.0 32 ............................. CTCGTACGCCGTCTCACTCCGCGTGAGTGTGA 64138 29 100.0 32 ............................. GGATCAAATCTTTTGAGAGCAATTAAGGGGGA 64077 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG 64016 29 100.0 32 ............................. TGGGGCTGAGCATGGCTAAACAACCGAGGCGC 63955 29 100.0 32 ............................. GTCAACTGGCACCACAGGATGATGGCGGCGAA 63894 29 96.6 32 ............C................ CAGGCGCTCGACGCGGCACGCAGTCGGGCACA 63833 29 96.6 32 ............C................ CAGGTCGACCGACTGGAGGCGGAGATTGTCGG 63772 29 96.6 32 ............C................ TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA 63711 29 96.6 32 ............C................ TTGTCGGGCTTGTTCGGCGCGGGTTGTTAACT 63650 29 96.6 32 ............C................ CCAGCGAAGGACTTGCTCGTGTGGTTAAAGCC 63589 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.9 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCTTTCACCAGCGGTAGCATTATCCGTATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTGACATCGTGCCAGCTTGTTCCCGCAGGGAAGGCGGCGGTTTTTGCACGTTGCTGATAGCCATCCTTATTCCCAAGATTCCAGTTAGTTGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCAAAAACTTCCGCGTCGTTACAGCACCCGGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12208-10593 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBKV01000033.1 Escherichia coli strain Aut2013_WWKa_NEU_44 Cont033, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12207 29 100.0 32 ............................. TTTGCTGAGTGTGCATACACACTTGAACATCA 12146 29 100.0 32 ............................. CTATCAGTAACAACCTGGTAAATATCGGTTTT 12085 29 96.6 32 .............T............... TTTTCGGGGCCATAAATGGCGCTCATTTATGT 12024 29 100.0 32 ............................. GATACTTTATTAGCGAAAGTAATCCTAGCTCT 11963 29 100.0 32 ............................. TTGGGGCTGGGGTTCGGTAATCAGATTATTGA 11902 29 100.0 32 ............................. CGGCACCAGGGCTGAAAGGCGGGGCCGCTAAA 11841 29 100.0 32 ............................. TGCACGCCCTGCCGGAATCTCCCCTCGCTCTC 11780 29 100.0 32 ............................. AGTAAGCCGGTTGATTATCGCCAGGGATATTA 11719 29 100.0 32 ............................. GGAAAATAAACGCGTTATTCCTTGATGGGTGC 11658 29 100.0 32 ............................. AGCAACAGGTATTTCATATGGCCTGCCGTGCT 11597 29 100.0 32 ............................. GCCAGCGGCGCTGAGTACGACGACCTGATTAA 11536 29 100.0 32 ............................. TCAATACAACAGCAATGCTGGAGCTGGAAAAA 11475 29 100.0 32 ............................. TGGTGGGATAGCTGCTCTGCCAGCGTGTCGCG 11414 29 100.0 32 ............................. TGGGCGCAGCTCATGTATTCCAATAAGGATAT 11353 29 100.0 32 ............................. AGATTCGCGCAATGTACGGTAAAGACAGCACC 11292 29 100.0 32 ............................. GGATTCTGCACTCTTTGATGTAATGGTACTGC 11231 29 100.0 32 ............................. CCATTCTTGTTGTCGTTCATCAAGCGCAGGGG 11170 29 96.6 32 .....T....................... TTTGTTTTGATGATTTATCAGTATATGAATTG 11109 29 100.0 32 ............................. ATTTTTGCGCGGCCTGCATGAAACCAGTGGCA 11048 29 96.6 32 A............................ GTACCGTTGAGCAATGGTGGGTAAATGGTGCT 10987 29 100.0 32 ............................. ATTTAGATACGGCACACAGGAATGCGCTGGAT 10926 29 100.0 32 ............................. CATGGGAGTCCAGATTACAAATTCCAGAATGG 10865 29 100.0 32 ............................. CGCCAGTCTGAGGTTTTCCGGTCATACATCGT 10804 29 100.0 32 ............................. ACCGTTGCTACACATATGATCAGGCATGTGCC 10743 29 100.0 32 ............................. GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 10682 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 10621 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.2 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAACATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAATCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //