Array 1 1402763-1404800 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFTH01000001.1 Bacteroides fragilis NCTC 9343, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1402763 47 95.7 30 ...A......A.................................... GATTCGAAGATATGCAAATGTAGCAAGTAT 1402840 47 100.0 29 ............................................... TGATTTGGCATCTGCTATTTGATCAATCA 1402916 47 100.0 30 ............................................... GCAATTACCCCAATCCTTCATGCCCTGAGA 1402993 47 100.0 30 ............................................... TTTGCCGGATACCTTAGTAGTGGTAGTCAC 1403070 47 100.0 30 ............................................... GATAGCGGCGGGGGAGCGAACGGCAACGAA 1403147 47 100.0 29 ............................................... AGAACCATCACGAATCAGATTCCAATACT 1403223 47 100.0 30 ............................................... ATCCTGCGAAATTTCGACCTTATCGCCGGG 1403300 47 100.0 29 ............................................... GTTATTGTAAGAGTCATAAAAGCGTGTAC 1403376 47 100.0 30 ............................................... TTAAATACCTCGTCAAAAGCGGATTCCGCA 1403453 47 100.0 30 ............................................... GTCTTGGGAATCTGTACGATTGTTGCAGAA 1403530 47 100.0 30 ............................................... TCTTAACAATGCGCTGCATCTCTCGAATAA 1403607 47 100.0 30 ............................................... CCACAAATCTTTATTCCAGTTGGCGTACCG 1403684 47 100.0 30 ............................................... AAACCATTCAAATATCTGCGCAATTGGGTA 1403761 47 100.0 29 ............................................... ACTGTTGAACTTTTTACTCGTAATCCTAA 1403837 47 100.0 30 ............................................... TCAATTGACCCGAAAGTGCAACGGTCAGGT 1403914 47 100.0 29 ............................................... TAAGGATAGGAATATTCAATCTTATACAG 1403990 47 100.0 29 ............................................... GCATAAAGAACTGGCATATTACCACTGAC 1404066 47 100.0 29 ............................................... AACAGAACTATCAGACACTATCTCTGAGT 1404142 47 100.0 30 ............................................... CGAATGGTCAAAACTATGCTGCTCAGGTTA 1404219 47 100.0 30 ............................................... CTCCAACTCTCGAAGAGCAGCAACAATATC 1404296 47 100.0 30 ............................................... TTCTTGCGGTTTAAACACTTCATTAAAAGC 1404373 47 100.0 30 ............................................... AAACTTAGTAACAGAACCGACAATATTAGA 1404450 47 100.0 29 ............................................... TCTTTTAACCTTTTATTAGCATTTCTCAA 1404526 47 100.0 29 ............................................... TGCTTAGTTATAACGCAGAATATGCACAT 1404602 47 100.0 29 ............................................... AGTGTCTTAAAGAGGTGATTAATGAAATG 1404678 47 100.0 29 ............................................... AGACTTAGCCATTTGTGTGGCATTCACCA 1404754 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 27 47 99.8 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TTCAGGGGCGGAAAGAACAAAGCTTTGGCTTCGAAAAGACTTGTTATTTGGAAACAAAAGGTTTGATTTAACAGAGGGTTAAATCAAGTTATAGGAAGAGGAAAAACAAAAGGAGAGAAAGTATTGAGGATGAAGAAAATAGAGAAAAAGGGAGTATTTTCTGGGAAAAGGGATAAGTGCTGGTCCGAAAGGGATAGTTGTGATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : CTTACTCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 4945275-4944731 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFTH01000001.1 Bacteroides fragilis NCTC 9343, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 4945274 29 100.0 34 ............................. GAACGAAAAGGCGGGCTGGATTTCAGCGGACTTC 4945211 29 100.0 36 ............................. GGAAATGGCGGAAGGATTGGCCGTCAGGGTAACTGA 4945146 29 100.0 37 ............................. TTAATCATCACATTGATCTTCTTAATCGCTTCATCAG 4945080 29 100.0 34 ............................. CCGAGTACTTGTACATCGTACAGTTTCCCTTGCT 4945017 29 100.0 34 ............................. ATACACGCCGGTCTTCGGTTCGATGGCGAATACG 4944954 29 100.0 36 ............................. TAAATAGCTCGGCAAGTTTTACGATCTGTGTAATTG 4944889 29 100.0 34 ............................. TACTCTAACTGATTATCAGCTGTAAGTCCGGTTA 4944826 29 100.0 37 ............................. TTGTGCAAAATGCAAGATATTACGATGTGCTGCACTG 4944760 29 93.1 0 .........................G.C. | A [4944736] ========== ====== ====== ====== ============================= ===================================== ================== 9 29 99.2 35 GTATTAATTGTACCTTATGGAATTGAAAT # Left flank : ACCGTTTAAAATGTACTGGTAGATATGTATGTTATTTTTGTTTATGATTTTGGAGAAAAGAGGGTCTCAAAGATGTTGAGATTATGTCGTAGGTATTTGAATTGGATTCAGAATTCTGTATTTGAAGGTGAACTTTCGGAAGTACGTTTAAAAGAGCTATTATTATTAGCAAAAGGGGTTATGAACCCCGAAGAAGATTGCATTATTATTTTTAAAGGGGCTACTCAATGCTCTTTGGAAAAGGAAATAGTGGGCAAAGAACTTGCTAACATTGATAATTTTTTGTAAGACGGTTGTCGAAGTAATTTGTTATTGTGAATTATCAATGGTAAAGTAACGGAAACGCTCTATGACATGTTGATATATAGATGTTTAGTACCTATGTCGCTAACCTATGTTTTTTATATTATTCTTGATCGACACATTATTTCTAAAGAAAAGCAATTTTCTGCAAAAGCATTTGGCTTATTACTAAGTAATTGCGTTGATTGATGGGTAGA # Right flank : AAGGAAGATCTATATTTAAAGGTTGGCTTAAAACTCTATCGGATGAAATTTTTTCTTCCTTGCTAGCAACATCCCCCATTATCCTTTGGGAAATGTTTTTATTTATCCTATTTCCTTTTTATTAGAAAACAATCCTTATATTTGTCCGTGTATTATTAATTTAATGACAAATGACACTTATGAAGACATTGAATTTTATGAAAACGCTATTCTTATTGGTAGCTATAGTAGGCCTAAGCTCTTGTGGTGACAAGTATTATTCAGATGATTATCTACGAAATAGCAATGCAAAGCTCTGTGGCAAAACCTGGGTGAATGATTCGGAGAAGAATGATGTAGACGAGTGGGTTCGGCATACATTGAAGTTTGATGATAACGGCCGGCTGGCAGAGACTTATGCCTATTATCATGTAAATGAAAGTCAGCCTTACCGCACGGAGACCAATAATCTGACCTGGTCGTGGATAGACGATACGATGGAAGGTATTGTTTTTGACTAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //