Array 1 69757-68487 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSP010000018.1 Limnothrix sp. FACHB-406 contig18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 69756 36 97.2 37 ......................C............. ATGTCGAATCTAGCGGCGGGCATCACGGCCGGCATTG 69683 36 97.2 37 ......................C............. AAAAACCTCGATCGATCATTTGCACCGGAGCTGGCCG 69610 36 100.0 35 .................................... GGTCTATACAAACGAGTTTCGCTTGAACGAAGCAG 69539 36 97.2 37 ......................C............. ATGTGGAAAACCTGACGGAACGGGCGGATCGTGACCA 69466 36 100.0 35 .................................... TTGACCGCCAACCACTTTTGTCCGTCTTTGGTCGT 69395 36 100.0 36 .................................... ACCCCTGAGGCGGTGGCCGCGGCCAAGGGAATTCGC 69323 36 100.0 35 .................................... GTTGTGGTCGGAGTCGGCTTTCCCGTTGAGCTGTC 69252 36 100.0 35 .................................... GCCGAAGCGACCCTTGAGCAAATCTTTCCCGGCGC 69181 36 100.0 37 .................................... GCAGTTTTGAAAAAACCACAAACGTCCATTAAATTCC 69108 36 100.0 37 .................................... GGTCGTTGTAGGCGGGGTTGAAGTAGGGGCATTGCCC 69035 36 100.0 39 .................................... AGTTGGAACGGGCCCGCCAAATTCAGCACGCGCTGAAGA 68960 36 97.2 39 ..................T................. GGACTCGATCGTGTCGCCTGTGGCCGCATCAATAATCCG 68885 36 97.2 38 ..................T................. TGAAGGTATAGCGCATCCCGATCAAGCGATGGATCTCT 68811 36 100.0 37 .................................... CCCAATTCGCGGCGCAACTCTGACAGAGCTTGATCGC 68738 36 100.0 37 .................................... CCAGCAACAACAGGTGGGGGCGCATCTATCCCACCCG 68665 36 100.0 34 .................................... GGTTGCAAGATCGCCAACTGCAAAAGCTAACCAA 68595 36 100.0 37 .................................... TGCGAATTTCTCGACAACCAAATCGCGCGGGTGATCG 68522 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 18 36 99.2 37 GTGATCAAACCTCTGATGCCGTAAGGCGTTGAGCAC # Left flank : TCGGCCAGGGTCGATTTACCGTGGTCAATGTGCGCCACGATCGAGAAGTTACGGATGCGCGAAACGGGAACGTCGGTCATAGGAGCGGAACGGTAGGGCAAACGGGGAAAGGAAGCCAACCGCATTGTAACGAATTCCATAGCGTCTAATTCGCTTTGGCGCTCTGGATTGTTTGGGGCCAATGGGGCGATCGGGCTTTCGGCATGGATCGCGATCGGACGGGGGCGATCGGGCGGGAATGTTGCCCAAAAACAAGCACCTGGGGCGGTGGCGGCGGGGCGAGGGGTTGGAAGGGCGCAGAATGTTGATGGGGTTTGGGTTTGGCGATTTTTGGGATCTTTGGAGATGCTTGTAAATAGCTGAAAGGGAGATGGGGCAAGGGTTGGGCGATCGGCAAAAGGGCGATCGGGGGTGATTTTTGGGCAGATGCGGGGCGATCGGCTAAGATGCTTGTAAGGTTCTATTTCGGCGCTTGTCCCGTAAGGGTTTCAAGCGGCGGG # Right flank : AGCACAGCACCGCACAGCGCAGCACCGCAAAACACTCGTTTCAGCCCTGTTCTAAACTTTCCAATCCCGTGAGGTGGTGAGTCTGTCGTCAGATTCGCCACCTCACCTTTTTGATCGCCTCCACCTCCTTCAAATCCTTTCGCATCAGTAGAAACCCGTACTCCCCAAAATCGGAGTTTTAACCCGCCGATTCATACCTGGCTTACTCTCCGCCGCTCTTTGCCTCCGCTTCGTCACCCCCCGATCGCCTGTGATCTGTCACCACACCACCAATTGATTCAGAAAACGCCCATCTTTCGCGTTCATTAGAGAGCGAAAATCAGCCGAAAGATAATCTTTGCATTTTCGTCTACTCCTCAATTCTGAAGCCTATTCCGTAACCTTCGTCTGGAAAGTCTTGTTCCAATCGATCGACTGCGGTTGGCTGTCTCTTAGGTTTAATGAAACTAATCAGGAAAGCTTGCGGCGATCATAGGTTGCTGAAATATTTGATCGCTTTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCAAACCTCTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 21424-18945 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSP010000003.1 Limnothrix sp. FACHB-406 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 21423 37 100.0 38 ..................................... ATCAGCTAATTTAGATTTTTTAGGGCCAGATTTATATT 21348 37 100.0 36 ..................................... CCGTCCTATGCATGGATTTCCAACCCCAAGGGTGCG 21275 37 100.0 34 ..................................... AATATTCGTGGTGCAACGAGCTTGAATCTAACTC 21204 37 100.0 39 ..................................... TTTCGAGGGTATGGGCCATGGCAGCGGCAGTTGGCCGCC 21128 37 100.0 37 ..................................... ACCCTGTCGGCCAAGACGGTCGATCGCCACAAGGTGC 21054 37 100.0 44 ..................................... CCCAGCCACAACGTTATTGGATTGGAGGTGAAAACCATGAGTGA 20973 37 97.3 37 ......T.............................. CCCAGCCACTCCGCAATCTGAGTCACCCCGGACTGTG 20899 37 97.3 34 ......................A.............. ATGTGGTGGTCGTGATCCAAGATCATCTGTTGAT 20828 37 100.0 37 ..................................... CGACACCGGTTGCGGCCTCGGATTGTTTGACCTCTAG 20754 37 100.0 38 ..................................... GGTTCAGACGGATCGCGCTGGGGTTTTCGTCTCATCGG 20679 37 100.0 38 ..................................... TGCAAAACGGCTGTGGCATTGCCGGTTTTAATCAAATT 20604 37 100.0 33 ..................................... GGCCGCCATGCCGCAAGCCACGGCCCCGGCTCC 20534 37 97.3 39 ..................A.................. CACCACCCGGTCAAGGTCTACTTGCAAGATGAGCTGATT 20458 37 97.3 36 ..................A.................. CTCTTCGAGATCGACCCAATTATCCCTGGCTTCCGA 20385 37 100.0 37 ..................................... AACACCGTCACCACCGTTTGCAGCACCGGCAGCCCAA 20311 37 100.0 34 ..................................... AGCCGAAAAAACGCCGCCGCCCAATCTACTCCCC 20240 37 100.0 40 ..................................... GCGGGTCACGCTTGGCCCATTGCTCGATCGCCCCAAGACT 20163 37 100.0 34 ..................................... AAGTCAGGGTGGCGGCAATTTCACCCGATTTGAG 20092 37 97.3 37 .................T................... GGTGGATTGAGTGATCGCTGTGGTGCGTTGCTGATAG 20018 37 97.3 38 .................T................... GGGGCTACTTGGGCCAGCTCAGGGCCGCTTGGGCCAGG 19943 37 100.0 39 ..................................... AACAGACGGGGGGTATGTGGACTAACCGGGGCGATCGGT 19867 37 100.0 41 ..................................... TGGGGGGTAATCGGTACGGTAGGCGCTGCCGGTAAAAGGGC 19789 37 100.0 35 ..................................... TTGGTTCAGCATGGCGCTTCTGCGTCGAAATCAGG 19717 37 100.0 36 ..................................... TCCTTCCTGACCTCAAGGCTGTAGACGCGAACCATC 19644 37 100.0 37 ..................................... TCGGCAAGGAGTCGCATCGCCAAGAGGTGGAGCGATA 19570 37 100.0 38 ..................................... CGGCAACGTCCCCCTCTGACTCCCGGATCCTGATCAAC 19495 37 100.0 34 ..................................... TTGATACCCTCGATCGCGCCTTGGATGGTCAACC 19424 37 100.0 36 ..................................... AGGATTAGCCCGGAATTTCAGGCATTTTGCCGTCGT 19351 37 100.0 37 ..................................... CACCAGGGTTTGATCCACCCATCCGCTCGCCAGGATA 19277 37 100.0 35 ..................................... AGCTCGGCCGCAACCGAAGCGATGTCATTGCCCTC 19205 37 100.0 38 ..................................... TCGAATCAGCCACCCGTGATTTTCATTATCGACGAATT 19130 37 100.0 36 ..................................... GTCGTCGTTTGTATTGCATTCTTCGGGTTCTAGTAC 19057 37 100.0 39 ..................................... AGTGCGTGAGTTGCTGGAGAGCTACCTGCTGACAGACGG 18981 37 91.9 0 ................................A.T.G | ========== ====== ====== ====== ===================================== ============================================ ================== 34 37 99.3 37 GCAGCGCCCGGCCCCCGGGCTGGGCGAGGATTGAAAC # Left flank : AATCACACGAGTAGCAGTTGCTGACGCGAAGGATCGTGAAAAGCTACAAACGATCGGGCGCAAAACCAAAATCTCTTACGGTCTATATCGAGGCTATGGTTTCTTTTCGGCTCCTTTGGCCAAGCAAACCGGTGTGACCGATCGGGACTTGGAACTGTTTTGGGAAGCGGTTCAAGGAATGTTTGAAGTGGTGGATCGATCGGCTAGTCGCGGGCTAATGGCTGTGCGTGGGTTATATATCTTTTCCCATGAAAATCCATTGGGTAATGCACCAGCCCACAAATTGTTCGATCGCATTTCGGTGCAAAAGCGTCCTGAGGTCGATACACCGCGATCGTTCGATCACTACGTCATTGAACTAGACGAAACAAATTGGCCCCAAGGAGTCACCCTAACCAAGCTGATTGAAGGCTAATTAGTCCTTGGCGGAAGCCAACTCTCAACCTAGTTGGCTTCCGCACATTTTCTTATCTTTTGGTTCAGGCCAGTTCGTAAACCCT # Right flank : TCGCTTTATAAATCAGCTCTAAATCCGGATTTAGAGCTGCAAAGTCGGCTTTAGATTCTCTGTTATGAGTTAGCTCCTAGGTTTGAACTGGGCTAAAAACCGGCATTTCGGTTAGTTCAAGCTCATGATAATCAGCCCCTGTTGCCCCAGCAGCACTTCACGCAAAAGGCTCACTAAACCAACCCAAATGATCGGGCTGATGTCCACGCCGCCGATCGGGGGGACGATCGCGCGGGTCACCTTCAAAAAGGGTTCCGTCGGAGCCACCGCCAACTTAAAGGGCAACTTTTGGGCATCCACCTGGGGATACCAAGTCAGTACGATTCGGACAATGAACAACAAAATGAACAGACCCAACAGCAGGCTCAGGGCCCACGATCCAATCACAACGGTACTCATGCCGAACTTGGGGTAGAAATTGAGAAGGGCGGGCGATCGGCCTCGGGGGGATGGCTAGCGCAAAATCTGGCTCAGAGGGCAGCGCCCGGCCCAGATGCCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCCCGGCCCCCGGGCTGGGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.70,-17.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA //