Array 1 3205414-3208707 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCST01000001.1 Methylomonas sp. ZR1 ZR1_scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 3205414 36 72.2 36 TTCGGGC......T.........A.A.......... CTGATCGAAGGTAAAAGCGAATCGGCGGCTCAGACT T [3205418] 3205487 36 100.0 37 .................................... AAAGCTTGCGCGAGATTAGCAACGAAAAGCAAAAGGC 3205560 36 100.0 36 .................................... TCAACCGCAGGCGTTCCTCGTAGTGTTGCCGCGTTC 3205632 36 100.0 35 .................................... CGTTGGCCGCCGTCGGACCCGGTGAACGCCGCGAC 3205703 36 100.0 36 .................................... AAAGTGGCCAGCAAAACCCGCGTCAACCGCACTACT 3205775 36 100.0 37 .................................... AAAAAGCCTTTGGCAGCGACGAGGCCGTGGCCTTGGT 3205848 36 100.0 37 .................................... TGCCGGTAGCAACCCAATCGGAAACGCCGATGCTTAT 3205921 36 100.0 35 .................................... CTTCGGCCAGCCGGTTGGCGACCGATTAGCCGGAC 3205992 36 100.0 36 .................................... CCGGCTATTTTTCAGCGATGGCACGGCGGCTTACCT 3206064 36 100.0 38 .................................... AGGGTAACGATGGCAAAAATTAGTTGGGAATCATAAGT 3206138 36 100.0 35 .................................... AGCGCTTCGCATACTTAGCTTTCCCCCTGTTCCTT 3206209 36 100.0 37 .................................... AGGAGAAAAACCCCAGGCCATAGCCAGTGCCGGCCAG 3206282 36 100.0 36 .................................... CAGCACTCGATAATCGGAAAAGCGTTCGGAGCTGCT 3206354 36 100.0 35 .................................... AAGGCTTCCCACGTCCGATAGGTCGCGGTTTTGGG 3206425 36 100.0 36 .................................... AACCCAGCGCCGCATCGATAGTTCGCAACCGAGCGT 3206497 36 100.0 36 .................................... ACCAGGCACGGGGTTGTTTGGTGAATTGGGCGGATA 3206569 36 100.0 36 .................................... GCTCCATTTTTGGCCGGTCACATAGCAAATGCGCTT 3206641 36 100.0 37 .................................... GATGCTGTTTTGGCTATCGTCTTTTAATATGAGCAAT 3206714 36 100.0 37 .................................... GCCCGCCGATATCGGTTTCGGCGCTCACGGCAATACC 3206787 36 100.0 37 .................................... CAATCGGGCTAATCAGCGACAGCACTTCACCCGCCAC 3206860 36 100.0 37 .................................... GGAAGATGTTTGATGAGGCCATCAATTCGCAGTCAAT 3206933 36 100.0 37 .................................... TTACTTTGCAAGCCCGTCATCATTTATCGCACACCTC 3207006 36 100.0 37 .................................... CGCAGTTTCGACGGCATTACTTTTGGCGATTTGGTTA 3207079 36 100.0 37 .................................... TTGGAATACGACCTGATCGCCCGCTGCGAGTACCCGG 3207152 36 100.0 35 .................................... TGCTCGATGATATTCAACCTGGTACTGAAGAAATT 3207223 36 100.0 35 .................................... AAACAATGGCCCGCGCGGCCGATGTTCGCACTAAG 3207294 36 100.0 38 .................................... GAGGCTTGCCAATCTCTAAAGACGACAGTTGGTATGGA 3207368 36 100.0 36 .................................... ACAGGAACAGCAGCAGGAGAATCAACAGCAAGACCA 3207440 36 100.0 35 .................................... GACTGAGGATTTTGGAGTATATAACTTGCTAGATT 3207511 36 100.0 36 .................................... GATCCGTGGGAACACGGCTGTCAACAATGCGGGGAG 3207583 36 100.0 37 .................................... TAATGGTGAAATATTTCGCGGCTGCGAAAGCCGGAAA 3207656 36 100.0 37 .................................... CAGGCTGGGTTTAATCGAAGCTTTGGAGCAAGGTTAC 3207729 36 100.0 35 .................................... AATCAGTAAAATTACTTGGCAATGGCCCAAGGACA 3207800 36 100.0 36 .................................... TCGTCTGGTTCAAACTATCGTTAGGGCAGTATGCCG 3207872 36 100.0 38 .................................... CTGGCGAGGCTTGAGTTATGGGAAGGCGAAAACCCATT 3207946 36 100.0 37 .................................... ATTGGTTAGTAGACGTGAGGCCGAACGGCAGCAACGG 3208019 36 100.0 36 .................................... TCGCGGAGATATTGCCAAACCGGATTAATTTCCGTT 3208091 36 100.0 36 .................................... CAATGCTCTCCGGTTTTCTTGCTTTCTCGCACCATT 3208163 36 100.0 36 .................................... TGGGTGGTACGTTGTCGGCATGTCTTTAATGCCTAA 3208235 36 100.0 37 .................................... TCGAGTGAAAACAACAATTCAATACTAAGGACGGCAG 3208308 36 100.0 37 .................................... GCAATACAGGCAAATCGGCTAGGTGACGTATCGGGAT 3208381 36 100.0 36 .................................... ACCCGCCGGACAAACTTATTCCGGCCGCATCACCGG 3208453 36 100.0 38 .................................... CCAGACGGCTTTGTATTTTTCCAAGTCGCCGAATAATC 3208527 36 100.0 36 .................................... CAACGCCAAGGCGTTATATACGTCAGTTAAGGTCAT 3208599 36 100.0 37 .................................... CGTGCAAGCCACATTTAGATTAGTCGCACAGGGTTGA 3208672 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 46 36 99.4 36 GCTTCAATGAGGCCCCGGCGGGAGGCCGGGGAATGC # Left flank : ACCACATCCATCAGATGCGTCGTACCGCAGGCCAGAATGAACACCACAAACAGCCACAACACCCGGACATACGGAAAATCCTGCCGATGCCGCGCGAAATAACCCAAGGCAACCGGCAGCAAAAAGTAAGACAGAAATATCAGGCCATCGCTGATCACAAAGGTCCACAACAAACCCGGCGACCAGCTCAGGCAATAGCCATGCGGCATAAAATTATTGTCGGTCAGGAACTTTAGAATGTCATTCATGGCAGAAAGATCGGTAATAGTGATTTGCACGATTTAGGGAACTTGAACGACATACCGTCGCCCCGTATCCGTTAGCTAACGCATAACCCGCATTTGGATTCTCTAAATCCGATACAACTAAACATAGCAGCTAGCCCAAACAGCGTAAGGTTTAGCCACTTTTTATGTGGAATTAAACGCTGGCAGCAGGTAGATGGTTGGGGGGAACACGCTTGGATTATTGACCCGGCCTTATTTATCACGGATATGCCG # Right flank : CAGCGCGGGCTGGAGGCCATGGTTGGCGCGGCCTGCGCGGGCCGTTTGCGAGGACTGCGGAAAACGGCCGTTCAACTTTAGCGGAAAAGTCTGCATCGCGCTAATCCAACTTGCTAAGTACCTGATTGTTAAAGAGCAGCCGGCTTGCGAGAGCTGACGGGGTTTTTCGCGGCACCGCAGCGCTCGCAAAGCGGCGGCGGAAAATCCGCATCAGACGATGACCGGCTGCCGTTCCACCACATCGAAATCCTTGCCCAAACTGACCACCGAGGGTTTCACCGTTTCGGCGGGCCCGACGTTGATGATCAGGACATGGTCGTCGCTATGATGGATGATGCCATCCAACAGCGCGATTAATTCCGCATGGCGTTTGCGGCTGAGCCGGCATTGAAAAACCGACAGTTGCAGCCAGTCGCCATAGCCTTTCATCAGCCGAAACACCCGCCGCCAGCGTTTGGCATCGCTGATGTCGTAAGTCACGATATATAAATGTTCGAGGG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCCCGGCGGGAGGCCGGGGAATGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.80,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 3723429-3723032 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCST01000001.1 Methylomonas sp. ZR1 ZR1_scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 3723428 29 93.1 32 ....................A.......C GTAGAAAGGTTTCCTTGGAATCGACGCGGATT 3723367 29 100.0 32 ............................. ATCGTCGCCTCCCTGCCGTGTTATCTGGAAGA 3723306 29 100.0 32 ............................. ACGGCTGCTGCGGGTCCAGGCCGACATGAAAC 3723245 29 100.0 32 ............................. TTGTTTTTCCAATTGCAAGCGGCGTTCCTGCT 3723184 29 100.0 34 ............................. CCAAACTGGAAGCAGTGGAAGCCGGCATTACCGA 3723121 29 96.6 32 .......A..................... GATGTCTCGCTGCATAAGCCGGTGCAAAGCAA 3723060 29 89.7 0 ..........................TGA | ========== ====== ====== ====== ============================= ================================== ================== 7 29 97.1 32 GTGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : ATCGCCCCGGCCATTCCCAATGCGGAGGGCATCGGCGATGTTGGTCATCGTAGTTGAAAACGTCCCGCCCAGGTTGCGCGGGCGTTTGGCGGTATGGTTGATCGAAATTCGCGCCGGGGTTTACGTCGGCGACTTGTCGGCCAAGGTACGGGACATGATCTGGTCGCAAGTCGAGCAGGGCTTGGAGGAGGGCAACGCCGTGATGGCCTGGTCCACCAATACCGAATCCGGTTTTGATTTTATGACTTTAGGAAAGAATAGACGGCTACCGGTAGAGCTTGACGGCTTGAAACTGGTGTCGTTTTTTCCGCCGGAAGAGGCCGATTTGTCTCCCTCGCCCTCCGGGCGAGGGGCGGGGTGAAGGTGCACTAAATTCCTGTTGGGATATAGGGCGCTGTAAGGGTAGTCGCCAGCTTTTTAACAACTTGGAAAATACCGAAAAATTTGGTGGAAATTTAGCCAGGTTATTTTTATATGCGTAACAATAAGTTACGATTAGT # Right flank : CTTGTTGTTGACCATCCTCATGTCGACTCGTGGCGTTGGTGCAAGTGTCGAGGTGTGGAATGCGGAGGATATTCTAGCGGAACGGGTATCTCTGATCGGCTTGCCGGCAGGGAAATTGCTAAAATGGCCTGTTGGTAGGCGAAGTGGATGTTTTTCGGTATTCGTTGATTTGGTTTGTATTAGCTCGGTTCCCCGGGATTAGAAGAGGATTTTATATGATGTTGCAGCAAGGCTTCGCCGATGTTACCAGGGTCGATGCGCGGGAGATGGTGGTCTTAAACAGCCGCAAATGTCGCGGATTTGCTGGTGTCATTAACTGATATGAACAAGATTCCACCCAAACGCGGCCTGGGCCGCGGGCTTGAAGCATTGTTAACCGATATGCCGGCTAAATCGGCAGCGGATAAACCAAGCATTAAGGCGGAAACCGTTCCGGGGCCAGCCGTCCGCGGGGAAAATAGCGATTTGCTTCAAGAAGCCGAAGTGTTAAAGACCCTGTT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //