Array 1 818708-820195 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034193.1 Limosilactobacillus fermentum strain YL-11 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 818708 36 100.0 30 .................................... ACTCTCTTGGGTTTACCTGGGAGGTAATTG 818774 36 100.0 30 .................................... TTTCTTTTTTAATCATCGATTGGGTGTTTG 818840 36 100.0 30 .................................... AGTTAGCCAAGAAGTTAGTCGCCATGGCTG 818906 36 100.0 30 .................................... AGCGATGACTGCTGGTCACCCTGTCCGTTA 818972 36 100.0 30 .................................... CGGTATTTAGCCGGAATCTTATCCTCATCA 819038 36 100.0 30 .................................... GGGTTACGATCAAGATCAAAACGAGTCATA 819104 36 100.0 30 .................................... TTTGACAACGTCCAGCTCTTCCAATTCACG 819170 36 100.0 30 .................................... CATTTCTAGCGACGTATACGTTGATTCAGC 819236 36 100.0 30 .................................... GATCAGTCCCTAGCTTGTTTTGCAAGCCAA 819302 36 100.0 30 .................................... ACCTTAGTTTCACTACCAGTTGCCGTAGTA 819368 36 100.0 30 .................................... TCAATGGCCTATCAGACCCGTTCGAGCTAT 819434 36 100.0 30 .................................... ACTAAGTTAGCGATCTTCCACAGTGCATCG 819500 36 100.0 30 .................................... TCGTCATTCTCGTAGTATCTGTTAATCCAA 819566 36 100.0 30 .................................... CGTCTTTAATGATCGCCCTTTCTTCTTCGC 819632 36 100.0 30 .................................... TAAAAATCCGCGCACGATAGGGTTGTTAAG 819698 36 100.0 30 .................................... ATATGATTCCACGAATTCCAAAAAGATTAT 819764 36 100.0 30 .................................... TGGCCAACATTAAGCGGGCGATGACAGAGG 819830 36 100.0 31 .................................... CCCCGCCGCCGGCCTAATTCTATATAAGATA 819897 36 100.0 30 .................................... TATGATATGCGGGAGAATGATGTTGAATTT 819963 36 100.0 30 .................................... CGTGGAGAACCTGGTTAAAAAGCACGGTGC 820029 36 100.0 30 .................................... CGCTGGTCACGCTGAACGGGATTAAGAACG 820095 36 100.0 30 .................................... CTTTCCGTAAGATCCAAGAAGCGCAAGATG 820161 35 86.1 0 ..........................-..TT..A.T | ========== ====== ====== ====== ==================================== =============================== ================== 23 36 99.4 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAGCTTGATAGCTACCAAACAGCACTTGATAAGATGATTGTCAAAAATCTTAGCATTCAGAAACGAGATCGGATGAATGACCTTGCTCGTGAGGTGTTCTCAGAGATGCAAGATTCTTTGTTCGAATTCGACTTACCGTTGGAGGTGCGGTATGACGAGAGCCTCTTGAGATTATACAAATATGCGAAAATTAAATATTTGACGCAAGTAATAAGGCAACCTTATGGTATAATTGAAACCGATCTAAAATTACATCTCGAATTAAAAGACTGTCAGGTTCTTGGGTATTGTAATGTCGCTAATTACTTATTGCCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTGGAATTCTCAGAAAAGAGAGAAACTCTACAACAACTCAAACAGGATATTTACCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGATCGTTAGTTTTTGATGAGAAAATAACG # Right flank : TTATAGACTAAGGGCGTTGCTGTTTTTAGCAATGCCTTTTTTAGAAGTGATGGGGGAAAGATAAATATTCCCACGTTGGTAATCTGACGGGAACTTTAGCGGGCGATGTGCTAGGATAGGGCCAAAATGATTGGAAGTGTTTACCATGCAAATTGATCCCGAACGGATTCGCCCCGAACTGCACCGGATCGGCAAGGTGGGGTACGCGATCAACCTGTTGGCCAGCCCCACGCGCCTACAACGAATGGGGCGGATGACGGCGAAGGCGAAAATGCCCATTCACTCGCGGCGGGAGATCAAATAAGACGTTTGGATTGAACGCCCTGACCACAGCAAGCTTCGGTTGGCCATTTTCCGAGCCAAGCAAGTCGCGACTAAGCGCCCGGCCACCGGGATCCTCTGGTTGCACGGGGGAGGCTACGCCCTAGAAAGCGCCGAAAATACATTGGTTTATGCTGAACAATTGGTGGCAGACGGGCGGTCCGTGATGGTGGCGCCGG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1043160-1042413 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034193.1 Limosilactobacillus fermentum strain YL-11 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 1043159 36 100.0 35 .................................... TTTTCGATTTTAGTCTTCATGGTTTTCTCCTTTTC 1043088 36 100.0 36 .................................... TTAATTTTGATCGCCTATACAAGCGCGGTCGCTATC 1043016 36 100.0 36 .................................... ACTACTAATCTTCACTTTAGTGATATAAATATAACG 1042944 36 100.0 33 .................................... TGGAGCCTAGCTACCGATATTCAATTAGTGATA 1042875 36 100.0 34 .................................... TTCCTTAGTTTTCATGATGATTATTTCCTTTTCT 1042805 36 100.0 36 .................................... CGATATTCAATTAGTGATATAACGGGACCACTCACC 1042733 36 100.0 37 .................................... ACGCCCGGCCCGGGCTTTCCTTGTTCCTTGATTATCT 1042660 36 100.0 33 .................................... TTTCTATTTCCTCCGTTTATCTAAAAATTCTTC 1042591 36 100.0 34 .................................... GGGCGCCGTGGTGGCCGCCTCGACCCGGTTGTGG 1042521 36 100.0 35 .................................... CTTTTATTTATTAACCGCTCAAGGGACGCGGTACC 1042450 36 86.1 0 ...................T.T.G..G........A | G,T [1042416,1042418] ========== ====== ====== ====== ==================================== ===================================== ================== 11 36 98.7 35 GATATAAACTGATCTCCGCCAGAAGGAGACGAAAAC # Left flank : AAACAGTTTTACGAATGGAATTATGCACCAACCTTCCTTTCTGCTTTTCCCTCTAAATACATTCAGGGGAATTACAAAGCACCCATATACCTCGGAGCAGGGAGCGGTCTATGGAGCAAAGTTGACCATCAACATGTTGATATTGAAGGGATTCGACGTCGAACTCCAAGAAAAATGAAGATGAAGTTTAATGGTGCCCTGAAGCTAACCAAGAGCCGGATAGTACGCTATAAGACTCCTAAAAAAGATGGCTCATTTGAACGACACGTTCTCATTATTAATAACGAAAATCTCTACGAAATGGGAAAATGTGGGTTCAAAATCAAGGAATTGTAATTTCAATTCTGAACTAGCTAAGTTATAATATATAGAGTTAATATTCGAAATTGACAATGTCCAGAAAAAGGGCTAGAGAGGCTTAAATGAGTACCCGCCTGGTCTAATTGAGGGCATTAAAATGTCAAGTTATCCTTGATTTAGCAAGAAAGTTAGCAGGATCG # Right flank : AGAGAGAGCGTGTATCGAAATTCCAGGATTTCGATACACGCTCTCTCTTGATTTAGGGGTCATGAAAGCTCATTGCAGTAGACTAGATATATAATTTATAATTGACACATAGGTTATATTCGAGAGAAAGAAATTAATACCAAATGGAATAGTAGGATGTTGATTTATCGGCAGGTCCTTACTTCGGGAGGGGTAAAGGGTGAAGAATATAGTTTATGTGGAGAATGAATGTTTTGTTGGTGTCACTAAAGAAGGGCTAAAATTTTCAAATATCAAAACAAAGGAAAAGAAATATCTGACCTTTGATGATATCGGTACATTGGTGTTTGACAATAGAAAGTGTTATCTATCGGAGCGGGTGATTGAATATTGCGTTCTCAATCACATTGGGATTTTATTCTGTGACCGAAGCCACTCTCCTTTAGAAATGATTGAGACCACCTACAATCAGGAACACCGCTATGAACGCTTGAAAAAGCAACTTACCTTAACTAGTAAGG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACTGATCTCCGCCAGAAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 3 1219244-1218237 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034193.1 Limosilactobacillus fermentum strain YL-11 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1219243 29 100.0 32 ............................. AAGGGTAGGGTCCTTTCTAACCATATATAGAT 1219182 29 100.0 33 ............................. TCGTTTCTCGGTGTAATGACAATGTCTTTGGCC 1219120 29 100.0 32 ............................. GTTGTTGACCACCAAAGCGATCAAGAAGGCCG 1219059 29 96.6 32 ............................T ACCAAACAGGTAGAGCGTAATTGCTGACTTGA 1218998 29 100.0 32 ............................. CCTTAGCATCAAGATCGCTGCTCGACACCTTA 1218937 29 96.6 32 ............................T TAAAACCGGAAAAAGTGCGGAAGAAATGCGGA 1218876 29 100.0 32 ............................. GAAGCTCGTTTCTTCGTAAAGATCGCTAAGCA 1218815 29 96.6 32 ............................A AGGAGGAAATAAAAATGGCTATCAAGGTTACG 1218754 29 96.6 32 ............................T GCATTGCCTGGTCATAAAGACTGGCGCAATGG 1218693 29 96.6 32 ............................T GCAATTATGTATGAGCTAAAGGGCCAAGAAGG 1218632 29 100.0 32 ............................. GATAAAAAGCAGAGATCAATTTATCCATCCCC 1218571 29 96.6 33 ............................T TACATTGGTGATTATCCGGTAACACTTGAGTCA 1218509 29 100.0 32 ............................. AGAGTCAACTACCGCAACGGTAACTGGCATGA 1218448 29 100.0 32 ............................. AAAATTAATAGAAAATCTAATGTACGCAGCAT 1218387 29 96.6 32 ............................G ATGTTTGAGATTCATATCATTGGTGCTAACAT 1218326 29 100.0 32 ............................. AACACTTATTTAGATGATGAAGGGTTCGGGTC 1218265 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.6 32 GTGCTCCCCATGTATATGGGGGTGATCCC # Left flank : GCGACTGACGAAATAATATCGATAGGGGCAGTTAAGTTAACCAAGGGGAGAGAGCTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGGAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAATAGTGGTTGGTTATAATGTTGCATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCAGGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAAGGGTTTTTGAAGATTTGAAAATCGCTTGGTTACAGGGATCTTTTAAT # Right flank : TCTACGCCTGTGGCAAGACGCTATTTCCCGTCTTTTAACAACGTCCAGCTTTTGTGATCCCTCTACGCCTGTGGCAAGACGACTTCGTTTCCATTTTGATTGGTTGTAGCTTTTCGTTTGAGGCCGAATTGCTGGCGGCCGGCATCGAGGTGCGCCACATCACTGAGGGGGTCAACGTGCAGATGTATAACACCAACTTACCCCTGCAAGGTACCGGCGCCCTGCACGGTAACATGGTGGTGTCGATGCGGCCAATTCCGGCTAGCCAGGTAGCTAAGGCGGTGGAGGTGACGGCGGCGATGCCTAGGGTCCACGGAGCACCAATCCACGTCGGCGACCCCGCTTCGTTAGGGATCAAGGACCTGTCCTACCCCGATTACGGCGACCCGGTCACGATCAAAGACGGGGAGCTGCCGGTCTTTTGGCCCTGTGGGGTGACCCCGCAAAACGCGATCATGCAAAGCAAGCTCCCACTGGTGATTACCCACGCCCCCGGCCAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //