Array 1 111530-112757 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTIJ01000001.1 Pasteurella multocida subsp. septica strain CIRMBP-0906 NODE_1_length_618058_cov_443.18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 111530 28 100.0 32 ............................ TGCATTATGTGAAAATTTAAAGCTGGGTGGAA 111590 28 100.0 32 ............................ TTTCATATTTAATTTCACTTTACAAATCTTAT 111650 28 100.0 32 ............................ CTTAAAAATTGACCCGCTAAAAGCGGGCCATT 111710 28 100.0 32 ............................ TGATGTGGGTGAATTGGTCGCAATAATACTCG 111770 28 100.0 32 ............................ TTTTGCACAAACAATTAGGTCACCAATCTATC 111830 28 100.0 32 ............................ TTTAACTATGCAGCAAGCGAAACCAAGGAAGA 111890 28 100.0 32 ............................ GTTTGCAATGTGCCAGTTTTAATACCGACCGT 111950 28 100.0 32 ............................ TCTTTTCTCAGGATTGTCTTTTAAATCCTGAT 112010 28 100.0 32 ............................ ACCAGAAGAACTGTATAGCGAAATGCTTTATT 112070 28 100.0 32 ............................ TGAATAACGTATTCAGACGGAATGCCACCTTC 112130 28 100.0 32 ............................ TGTGATTTTTACTCTTTCATTGGTTATTTTCT 112190 28 100.0 32 ............................ CACCTAATGGGTTTAATTGTCGCTGTGCGGTG 112250 28 100.0 32 ............................ TTCAAAGCTTTCCACCAGCTCTTGGCGTTGAC 112310 28 100.0 32 ............................ TTTTGTTGCGGCACCGCCACCGCAGAAAATGG 112370 28 100.0 32 ............................ GTTTTTTACTGAGCAAAGCGTCATTTTATTAA 112430 28 100.0 32 ............................ GTTTTGAGAACACCTTCAATCCACGGAATAAA 112490 28 100.0 32 ............................ ATTGCCGCCATTGTCTCGAACTCTTGCCCTGT 112550 28 100.0 32 ............................ ACTAATATTCACTTCTTTGGCTGTTGTGCTAA 112610 28 100.0 32 ............................ TTTGCGAGCAAAAAACCAGATAATTCCCGCAA 112670 28 100.0 32 ............................ TATCTTCCACATTCCACGTTATATCGATTACA 112730 28 96.4 0 ............G............... | ========== ====== ====== ====== ============================ ================================ ================== 21 28 99.8 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGGATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCCCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACAAAAAATATTGGTAAACGTCGCAAATCCAATACCCCCCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGTTCCATACTTGATGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : ATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAAGACTGGAGTGAGAATGTCGTCGAAAACTTACAGTTAACTGCCGTGTAGGCAGCTTAGAAAGCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGAGTTAACTGCCGTATAGGCAGTTTCAATTGACTGTTGGTATATGACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 112462-112228 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTIJ01000003.1 Pasteurella multocida subsp. septica strain CIRMBP-0906 NODE_3_length_265241_cov_448.372, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 112461 36 100.0 30 .................................... CGAGCGAGTAAAAACATCATTTTCTCGTAC 112395 36 100.0 30 .................................... AACCCCTGCATTGTAGGGTTAAGCTTTCCT 112329 36 100.0 30 .................................... TTTGACGCCACTGGCGAGAACCGTCAGATA 112263 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : CGCTATGTTTTTTTTTAAGCTTGTCGACAATTTTGTCTGAAATGATTAATTTCATATCCATTTCGGGTACCTATAAATTTTTCATAAATATTATTATTTGCTATAAACATAAATCCTCCGCATATTGTGTATATACAATTGTATATACAATAAAAAAAAAAGTCAACCCTTTCTTAGCAAAAAAATATTACTTACCTTTATTCAGGTGAACGGGTGACAAATTATTAAGCAATTTCTTTAAAAGATGAGGGGAATTTACACACCACTCACAAAACTGCGTTTTGCCTTTAAAGCCAGTAATATCAAGGGATTGTAAAAAAGCTGGTTAAAAGATGCGCGTTTTTTTTGTGGTTCAAATTTGAACCAAAAAATAGCACAAAAATACAGCTAAACAGGCGGTTGGATTTGGAGTAGACCCGTTAAAAATGAAAAAAGACTACGCTATTTTTCAATTTTAACGTGCCAAGATTATACCAGTTTTTAGAAAAGATATTATGTCA # Right flank : CTCGTGTCCCTTATCCCTTGTGGCACAAGGGATAAGGGCGTTTTTAATGCTCAAAAATTACTTGAATTCACGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACCCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAACGTATTGAACCTTCTTCAGGGAGGTGTTCACTGAGCCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 15540-17308 **** Predicted by CRISPRDetect 2.4 *** >NZ_MTIJ01000004.1 Pasteurella multocida subsp. septica strain CIRMBP-0906 NODE_4_length_191325_cov_454.566, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15540 28 100.0 32 ............................ AATCGCCCAGCGCTACATAATCTCGATGAAGC 15600 28 100.0 32 ............................ ACCTTTAGTGTCAGCAGATTTTAAAACAGATT 15660 28 100.0 32 ............................ AGTTTCCGTTTTGACGAAGTTTGAAAGTTGTT 15720 28 100.0 32 ............................ AGTCTCGGTTTATCACGTCTTTTTTTCTGCGT 15780 28 100.0 32 ............................ TCATCAGTGGATTAGCGAGCGTTGCCGGCACA 15840 28 100.0 32 ............................ ACATTCCGACTATGTCTTCATAACCGCATGAA 15900 28 100.0 32 ............................ CACGGCGGGAAGTAGTATTTTGAATCTTTCTG 15960 28 100.0 32 ............................ ATGCGAATTAAGTTTAAAAACAACTCGTCGAT 16020 28 100.0 32 ............................ ATTAATCAAATGCTTACCAAGGCTACTACTAA 16080 28 100.0 32 ............................ GAGCAATTCACGTTGTGCATAACGCACGTTTA 16140 28 100.0 32 ............................ GTCAGATATTTTTACAAGAATGCCTGCTTGGA 16200 28 100.0 32 ............................ GCACTTTGTGCATCGGCTTTTTTATTGCTCCG 16260 28 100.0 32 ............................ AATCTCTAATTGTTCTTTCCGCTCTGTCATTT 16320 28 100.0 32 ............................ GAACATATCCAATTTTAATTTGCTGATTTATT 16380 28 100.0 32 ............................ TTCCCAATTCGAGTGGTATTGGCTTGGTAAAT 16440 28 100.0 32 ............................ GTCAAGTGTTTGAAAATATGCTCTACGCCTAC 16500 28 100.0 32 ............................ GCACTTGATCCGCCACATCCTGCGGAATGGTT 16560 28 100.0 32 ............................ TAAGCTTGTGGCAGTCGGTGTGCAAGTGCCAG 16620 28 100.0 32 ............................ GGCTGGATCATAACGCCCACCGTTACCCGTGT 16680 28 100.0 32 ............................ ATTTTGTCTAAAATACCAATCACAATGTCGTG 16740 28 100.0 32 ............................ TAAAACATACCGATGGCTTTTCATCTCTTGAC 16800 28 100.0 33 ............................ CTGAACGCGTTTATTTTTTCGTGAATAATAAAA 16861 28 100.0 32 ............................ GATTTGCGAACTTGACAACGCCAACCAGATTT 16921 28 100.0 32 ............................ CACTATTATTAATAAGTTGTTGATGTTCTGCG 16981 28 100.0 32 ............................ TAGTAAACGCAATGAGCCTGCCGCCACAAGTG 17041 28 100.0 32 ............................ TTGGATCGCCATACCGCCATTACCATTAATTT 17101 28 100.0 32 ............................ ATAAAGTTTCCCGCGCTAAAAAATCATATTAT 17161 28 100.0 32 ............................ GACCCCATTGGTCTAATTTCGCCCACGGGATT 17221 28 100.0 32 ............................ TTCCGCATATTCAACCGTATTATCTTCAGTTG 17281 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCTAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //