Array 1 243857-245595 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHKO01000006.1 Lujinxingia litoralis strain B210 B210_contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 243857 36 100.0 39 .................................... GAATATTTGACCGTGATTTACCACAAACCCGCTTGACAC 243932 36 100.0 36 .................................... GATGTCGAGCTCGACGCGTCCGGCGACTTGCCGATC 244004 36 100.0 38 .................................... ATAACCTCGCCGGCGTCCTCCCCGGCCGGTCCCTCCGG 244078 36 100.0 36 .................................... TCCTGTGCTCGACGTAAACGAACGCGACTCCGCCGA 244150 36 100.0 38 .................................... AAATTGCTTGTTGATTATGTTTGGGAGGCGTGTCTATG 244224 36 100.0 38 .................................... CCGATCTTCTGCCCTGCTCTTGCCATGTCTCCCATGTC 244298 36 100.0 39 .................................... GGGAAGGTATATCGAACGAAGTCGCTGAAATTGCGCTGT 244373 36 100.0 36 .................................... CGTATCCTCAGCCGCGTCTTCTGCGCTAGTATAGGC 244445 36 100.0 37 .................................... CTGGTTGATTGTATGACTGCCGTTCCCGACGAGACGG 244518 36 100.0 37 .................................... TCGCCTGTGACTACACGTCGGCGGAGATGTATTCCCT 244591 36 100.0 36 .................................... CGCCTCGGTTGAGACAAGGAGGAGACGTAAATGAGT 244663 36 100.0 38 .................................... CATCCAACCCACTAGCAGCGCTCCAAGCGCCCCCACGA 244737 36 100.0 37 .................................... GGTGATGGGCGTGATCATCGGGATACCTCGGTGGCGG 244810 36 100.0 38 .................................... AAGAACGACGACGTCGACTTTATGAACGGCTACCTGCG 244884 36 100.0 36 .................................... TCTCCGCGTGGTGTCATCGCGGGCAGCACTGCTATT 244956 36 100.0 38 .................................... CTGGCCTGTACATGTATGGACGCCCCGTCATCGCTAGC 245030 36 100.0 39 .................................... TCCCACGTGCTGATTGCGCGCGTGGTGCAGCGCATGCGG 245105 36 100.0 38 .................................... CTTATGCCCTCGTGTGGCCGTGGCGTGTGGATCGGGCC 245179 36 100.0 37 .................................... AATGGCGCTCCAGTGCTCGCGCGCCTCCGTAATGAGA 245252 36 100.0 40 .................................... TGAGCCGAAACCGACACGCACTCCACCACCACAAAAGCCC 245328 36 100.0 40 .................................... GTCCCAGTCCTCGACACCGTAGGCGGTCGAGCGCGGTGCG 245404 36 100.0 40 .................................... AAGGCCGAGGTCAAGGCCATGATGCAGGCCGTCCAAGAGT 245480 36 100.0 44 .................................... CTCACGTAAAGGGCACCCACGCCCACAACAGCGAGGAGCACCCG 245560 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 24 36 100.0 38 CCTTCCGCCTCCTGAGGGAGGCGGCCCCGTTGAAGC # Left flank : GGTATCAGTGTATGGTTTGGAGCAACGAGGAGGGGGTCCGAGAGGTATCAGTGTATGGTTTGGAGCAACGAGGAGGGGGTCCGAGAGGTGAATTGTGCTGATGGCGATGAGTTCGCGCCGACTTTTTGGGGAGGTGTGAGATGGAGACGTGGCCTTCGGCGCATTGCTCAAGGGCGGTCGGCAATACTCAGCGGGTTTCAGAGGTACCGGGCGCCGATTTGGACTGGACCCTGGCAGGATGTTCTGGAACCTCTGCGCCCTGGCTGTTGGCGGCGAGTGCAGTTTTAAGATGCGGCCACGACGTGACGAGCATGGATGTGCTGAGGAAAAGCCCGGAGATGCTCGTTTTTCGGGTCTAAGTGCTTGTTTTTATGCCATGTTTTGATACACTTGGAGCCATGGAAACACTCCCTCCCCATAGCATGATCTCGCTGGATTTGAGCGATGCTCGCAAACGCATTCGTCTCGTCCAGCATTGGCGCGGTGATCGGACAGGTGCT # Right flank : CAGGTCGGCGGGGTGCTCATCCGTATCGCCCCAGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCCGCCTCCTGAGGGAGGCGGCCCCGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.70,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 15-3653 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHKO01000008.1 Lujinxingia litoralis strain B210 B210_contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 15 36 100.0 39 .................................... ATGGGCGACGCCGCGCGTTACGCGGCTGAGGTTGGGCCG 90 36 100.0 37 .................................... CCGACCTCTTGGGCCCACACGGCGCGAAAGAAAGTGG 163 36 100.0 39 .................................... TCGCCGGCCGAGCTCGCGAGGTAGTCGCCGACCATCGCC 238 36 100.0 38 .................................... CCAGTTGGGGATATGTCTAAAGATGTCAGCCACTTACG 312 36 100.0 38 .................................... GACGGCGTCCAGGTGGCGTTCCTCGATGGTCGCGAGAC 386 36 100.0 35 .................................... TGAGCGGTCCGTGGTATGTGTACGAGGTCCGCAGT 457 36 100.0 39 .................................... ACGGTGGAGAACGAAGGCGGTGGCGCGTTCTGTGTCTGG 532 36 100.0 37 .................................... CCGGCTACCAACGGCGCTCCGGAGCTGTGGGCGGCGT 605 36 100.0 37 .................................... AGCGATCTGTAGCGCACTACGAGACGCACATTGCCGC 678 36 100.0 35 .................................... GCCACGAACGCTGAGAGGTACCCCGCCGTCTCGTC 749 36 88.9 38 ............ATC..T.................. GTCGACGATCGCACGCGCGGGACCATGTACGGGGCGAA 823 36 100.0 35 .................................... GGGGTCTGCCCTATAGCCGTTGTTACGGCACCTTG 894 36 100.0 39 .................................... CCGGGCGGGTTCTTCCGCGTGCGCGGTGCCGATACCGAA 969 36 100.0 39 .................................... CTCCTGATCGAGCTCGCGCTCTGAGCGCCTGCTCTCGCT 1044 36 100.0 38 .................................... CAAGCGTTGGCCACGTTGAAGACAACCATGGCTGACGA 1118 36 100.0 39 .................................... CGGAACGCAGGTGCCCTACGCCATCAACCATCAGCTCGG 1193 36 100.0 37 .................................... TACCTGGACGGCGTGACGGCCACGACTGGCGAGGTTT 1266 36 100.0 37 .................................... ATTGATGTTTCCTTCTTGTTTGTGTTTTTCTTTTGCC 1339 36 100.0 39 .................................... TCAGCAGGACGGTGATGTCATATGTCCAGCTGTCTGGAT 1414 36 100.0 37 .................................... CCGGTGCGCTGGTCGTGCTCGACGATGCCGCGCAGGA 1487 36 100.0 38 .................................... GTGATGATTCCCTCGGGCGCGGCGAAGATCATGACCGT 1561 36 100.0 39 .................................... CAGGGTGAGGAGAAGGTCAAGGGGATCGCTACGACGCAG 1636 36 100.0 36 .................................... AAAATGACCGAGTACAACGGCCACAAAAACAAAGCC 1708 36 100.0 37 .................................... ATCCCAGAATTTTCGGTTGGGGTTAGGTGGTAGGGTT 1781 36 100.0 37 .................................... GAAAAGGCATCTCATCTCCTTCAGACATCTGAATCGG 1854 36 100.0 39 .................................... GAGTACAGCACGAGCCAGAAAACCCTTAGCGCGCCTAAA 1929 36 100.0 37 .................................... AGTGCGGGAGCGCGCTTGACGCCCTCGGTGGCGAGGA 2002 36 100.0 39 .................................... CTCGGTGTCGGTCGCTGTTTGCGACATCCACCGATCGGC 2077 36 100.0 39 .................................... ACGGGTTTTGGTGATGGTGGTGCCAGTCGCCTCAGCGAC 2152 36 100.0 38 .................................... CACTAAAGTCCCCTGGTCTATATTGTTGGTGTAGATAA 2226 36 100.0 38 .................................... CACAGCCACCCCACTTCACGCCGCCGTTTGCTCTTCGG 2300 36 97.2 35 ...................................A TTCAGGGCTCGCGCCACATCCGGCACCGCTACAAT 2371 36 91.7 38 ............A...T........G.......... GGCCAGCGCCTACGATCTCGACCTGATCGCACACTGGC 2445 36 91.7 36 ............A.C.T................... CAGTATAGCTTGCGGCGCTCAAGCTCATCGCGCTTT 2517 36 97.2 36 ................T................... CCACAAATCCGGATTGTCTTGGTAATGACACCCCTC 2589 36 97.2 36 ................T................... CCGGTGCCGGCGTAGCCGGTCAGCGTGAAGAACCGA 2661 36 94.4 39 ............A...T................... AGGACCAGGAAGACGTGGAGATCGTCGCGGAACGTTCGC 2736 36 97.2 37 ................T................... TGAGCTGGTCGAGTGCGCCCGCGAATCCGAGCGACGC 2809 36 94.4 36 ............A...T................... GCCTCCCGGTCATAGCGGGTGCCAAGAGCCTCCCCA 2881 36 94.4 39 ............A...T................... GTTGATGGCGCGCCAACCAAACTCGCGCCGCAGATCCTG 2956 36 97.2 39 ................T................... GAAGCTGGATCTTGGCCATGACCGTACAGGTGACGTCGA 3031 36 94.4 36 ............A...T................... TGGATCTCGGATGGCCTCGACGGACCGCATGGCCTG 3103 36 94.4 40 ............A...T................... AATCTTCATGTTGAACGCCTTTAGCGTGAGTTGACTTGCC 3179 36 94.4 38 ............A...T................... GCCTCACGCTGCAGGGTGGAAAGGTCGTAGGGAAGAGG 3253 36 94.4 37 ............A...T................... AGGCCGGCGGGCACGGCTTCGAGTGGGTCTGCATCGC 3326 36 94.4 36 ............A...T................... CGGCGCGCCCAGGTAGCGTTCATCGAGCCCTTGAGA 3398 36 94.4 36 ............A...T................... GGTGCGATCTTGCTTCTTGCCGGACTTGTCCACCCA 3470 36 94.4 38 ............A...T................... CCGTGCTGCTGGGCTGTCGATGCGTTGGAGGTGATCAG 3544 36 94.4 38 ............A...T................... ATGAGCGAGAGGCCGATTGATACTGCGATAATAGGCCA 3618 36 86.1 0 ............CTC..T.................G | ========== ====== ====== ====== ==================================== ======================================== ================== 50 36 97.7 38 CCTTCCGCCTCCTGAGGGAGGCGGCCCCGTTGAAGC # Left flank : CCGGGTTTAAAGAGC # Right flank : GGGGGGCGGCATCGTTTGGGCGTATCGTTCCGTTCGATCCACCCGCGTCATCGAAATGGTCCGGTTGTGAACGCTGGCCTTTTATGGTATCCGACGCGTACCTCTTTTGCGTGACATGCCTTCGTTGGACGACGAGATTCTGCTCATTTTGAGTTCGCCGCCTTCTTGAAGATTTGGGGAAAATACCGCGTCCACGATGGCCCTGGTGCAGCAAGTGGCCGGGGCTTCGGTGTGTGAAAGTTGATAGTGTCGACAGATGGTCATTGATGTGTGGATTGAAAATAGCGCGGACGAACGTCACGCCGGAAGACGATTTATAAAATTATCGGCGATGAGTAGAAGGGGATACTATGTCTGAACAGATGCAATACGAATCGAATGTTGAGAAACTTATTCTTCTCGTCGGCTCGAATCCGCTTCCAAATTACCTCGTGGCACGTGCTCTGCGACCTGAATGTGTCGGGCTTGTCTATACGAAGGAGACCGAGGTTGCGAAGGAT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCCGCCTCCTGAGGGAGGCGGCCCCGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.70,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA //