Array 1 6306-5490 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENJ01000085.1 Clostridium novyi A str. 4552 Contig85, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 6305 29 100.0 37 ............................. ATTAGAATTGAAACTATAACAAATAATCCAATTGCAC 6239 29 100.0 37 ............................. GTTAAAATTAATAATTCTTTACAATTTCCTGTTGGAA 6173 29 100.0 36 ............................. TTGCTCTATTAACAAAGTTTCTTAATGTTTCTAACT 6108 29 100.0 36 ............................. AATTATGTACCAATTGAAATTGGGACAGATGAAGTT 6043 29 100.0 38 ............................. TAAATAAAACTGTACCTAAAATTGACATCATTGTTACT 5976 29 100.0 37 ............................. TTATTATGGCAACATGATATGCATAAACCTATTGGAG 5910 29 100.0 36 ............................. CCTTTATCATAAATTCAAATGCAAACTCATGTATCA 5845 29 100.0 36 ............................. CAAAAGCAGCTATAAAGGCGGGGTATTCCCCTAAAA 5780 29 100.0 36 ............................. TTTATCTTTTCAGCATTGTCCAGCCCCTTAAAACGC 5715 29 100.0 37 ............................. TATATTAACACTAGTTTTGTTCAACTAGTGTTCGTTG 5649 29 100.0 37 ............................. TTGCAATGCGCACCTATAGCATTATCTGGTCTACCCT 5583 29 100.0 37 ............................. TCTGGTTGTTTTATGATTACAATGTTTGCTGGGGTTG 5517 28 79.3 0 ...............A.CAC..-...T.. | ========== ====== ====== ====== ============================= ====================================== ================== 13 29 98.4 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : AAGTATAGAAAATGAAA # Right flank : TTCATTTAGTTTTTTTACTAATATCGTGTAAAAATTTTAATGGGTTGTCACATTAAAAAAAAGTCTAGTGTGACAACCCATTTTAATAAATGTATTTAACTTTACATTCTATCCAATAATGCTGCTCCAATGATTCCAGCATCATTTCCTAACTTAGCTTTTTCTATTTTGCAAAGTTCTAGACCCTTAAATAGCTTATGTTCTTTTATATATTTTATTAGTCTATCCATGAATAAGTCGGAACCTGCAACTACTCCACCACCTATTGAGATAACATCTAAGTCTAATACATTTATTATATTATTTATTCCAGTTCCTAGGTATTCTATAAATCTATCTAGTGTAAGATTTCCAACCTTGTCCCCTTCTCTTGCAGAGTCAAACACAATTTTTGCATCAACTTTGCTTAAGTCCCCTTGAACTTTATCGGTTATTATGCTTTTTTCTCCATTTTTTATTAATTCTTGAGCATATTTTATAATTGCAGTAGCAGATGCAAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 749-3470 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENJ01000019.1 Clostridium novyi A str. 4552 Contig19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 749 30 100.0 35 .............................. TTAGCTTTTTGCATTATGGAAGCAGGAGTTCTTTC 814 30 100.0 35 .............................. AAAAAGAAGATAAAAGAGTATTATTATATATGGCA 879 30 100.0 37 .............................. TTAATTGAAGATTCTAATAATTCTACTTTGGTTTTAA 946 30 100.0 36 .............................. TGGGGAACGTTATTCACATTAATCTTATTCATAAAT 1012 30 100.0 36 .............................. AAACTTTAATAAAGGGACTTTATGTGAATTATATGC 1078 30 100.0 36 .............................. TCCATTTCCATAATTACATAGCAAATTGGATCTGGA 1144 30 100.0 37 .............................. GTGAAAGACATTGTATGTAAAAATGACACAGGAATTA 1211 30 100.0 35 .............................. TCGTATTGATTTTGTAATTCTTTTAATTTTTGCTC 1276 30 100.0 34 .............................. AAGCACACTATCATTTTTACTATATCGCCTTGAC 1340 30 100.0 35 .............................. TTATATATTTGTTGATCGTGATACTTTCTATACTG 1405 30 100.0 35 .............................. TCATTCAGTCTAAATAACTCTGTATAGTAATCATA 1470 30 100.0 36 .............................. TCTATATTCTCTCTATTACCACTATCAAATATGTCG 1536 30 100.0 36 .............................. TTTTTATATATGTATTTAATAATACATCACACTCCT 1602 30 100.0 36 .............................. GACTCAGCTCCAGAAGGAACAACAGATGTAGATTTA 1668 30 100.0 34 .............................. TCGTATGATAAAACCACTTTATTATACGCTATAT 1732 30 100.0 36 .............................. GGAGTTTAGTTTGTTAGATGAAGCTATAACGGGCGA 1798 30 100.0 37 .............................. TTATCTTCTAACATATATTTAGCTGTAAATTCGTCAT 1865 30 100.0 37 .............................. TTACTACCAATATCATCTGTTATTACAATAGGATTAA 1932 30 100.0 36 .............................. AATTATAGATAAAAAATCTGGTATATTAGTAGCAAA 1998 30 100.0 36 .............................. GTTACAACTATATATCGTTGTTTTGTGTTTTGTAAA 2064 30 100.0 34 .............................. TAAAAGCTTCATGCAATACTTTAGCACATTTATC 2128 30 100.0 36 .............................. TATTTCCTTGAAAGTTTTCTTTGTTCTCTTTTCAAT 2194 30 100.0 36 .............................. CATTAATCCTCCAATCTTTAAGAAACATACAATAAA 2260 30 100.0 36 .............................. AGGCTAAAAATGTGAGAATAGTTATTTTAGATATTC 2326 30 100.0 36 .............................. CAAAGAATATAGGCAAATAGATTTAATTTCTATTGC 2392 30 100.0 36 .............................. AATAAATGGAACTACTTATCCAGCAGTAAGTGGAAT 2458 30 100.0 36 .............................. TGTTATAACACCTAAAAATGGTAAAGCATTATATTG 2524 30 100.0 34 .............................. AAAGGTTGTAAGAATGGATTTAGAAAAGGATAGT 2588 30 100.0 35 .............................. TAGTAATCTTGCTCTCCTGTATCTGGATTAATAAC 2653 30 100.0 37 .............................. AAAACTCCTTCTCCAATACAGTAAGTTTTTCCTTCAT 2720 30 100.0 35 .............................. TCGTATTGATTTTGTAATTCTCTTAATTCTTGTTC 2785 30 100.0 36 .............................. TATATATTTGAATCTTTTTCTTTACTGCCAGGCTTG 2851 30 100.0 38 .............................. AATATTTTTATGTATCTATATAAAGTCATTCTGCTAAT 2919 30 100.0 35 .............................. TATCTTTCTTTTAATTAATCTATTCTTATGTTTGT 2984 30 100.0 36 .............................. CCAAAATACCCATCATTTGATGCCCTATCCCAATAA 3050 30 100.0 36 .............................. TTACAGCATTCATTTTCTATTGCATCGTTTAAAACT 3116 30 100.0 36 .............................. ATTCTAAGCACGTTTTTAATACCTTCCAATGGTATT 3182 30 100.0 35 .............................. TATAAAAAGCTCCACAAACTTCCTTTAATGGAGTT 3247 30 96.7 35 ...............G.............. GGCAGATGAAATGGGAATGCTTGATATTTTTGAAT 3312 30 96.7 33 ...............G.............. GTGAAGATAATAAAGAACAAATAAAACTAGCAT 3375 30 96.7 36 ...............G.............. AATAGATCTGTTTGAAGATACTTAAAGAAAGATGTA 3441 30 76.7 0 ......A........G.........CTCCC | ========== ====== ====== ====== ============================== ====================================== ================== 42 30 99.2 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : AGCCATTTAGACTTAAGGAGAAGATGTAATGAGTAAAAATATGAATTATAACTATGCATTTTTGTTTTATGATGTAAAGGAAAAAAGAGTAAATAAGGTTTTTAAAGTTTGTAAAAAATATTTAACTCATTATCAGAGGTCTGTTTTCAGAGGAGAGATAACACCTTCAAAAATAATAAAACTTAGAGAAGATTTAAAAAAAGTTATAGATGAAAGTGAAGATTTTATATGCATAATAAAACTATTAAATAATAAAGTATTTGGGGAAGAAGTACTTGGTGTAGATATTGAAACAGCAGAAGATTTAATATTATAAAGATTACTTTCCCAACCGATTCATAAAGTAAAATAACTTAAACTCATTGATTTTACAAGGTTTGTTTAAGTTTTTTTGTAAAAAAATCAAATAATCAAAATCGGTTGGGAAAAAATCAACGAAAGTGTTTATTTTCAATGCTTCTAAGGGTATAATAAAAATAAGGAATGGCTATTTTACAGTA # Right flank : CCCTAATCATACTCGGACAATTGCTTTTGAATTAGATATAATAAAAACAAAGTGATTGTAGGTAACTTATGAGAGGCAGAAGTTATACAAAAGAATTAAAGGAATCAATACTAAATGAGGTTAAAGAAGGAGGCAACGTTTCATTAGTTGCAAGAAAACATGGAATTTCACAATCAACAATAAGAACATGGATCAAAAATTCTAAAGAAAAAGATAACATAAAAATAAAACCAGGTAGAAAAGCTTTAATTGAGGGAGGAAATGACTTTAAAAAAGAAATAACAGAAATAACACAAGAAATGATACTCTAAAAAAAATATTAGGGGAAAAAGATTAAAAAATAGCGATTCTTAAAGACTTAATAAAAAAAGCGAACCCTCAATTAAAGATAAAGTAGCAGTAGCTAAAAAATATATAGAGCAAGGTTATAATGCAGTTTTTGTTTTAAAAATAGTTGGCTTATCAAGATCCACATACTACTAGAATTTAAGTGTGGAAGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 1585-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENJ01000005.1 Clostridium novyi A str. 4552 Contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1584 30 100.0 35 .............................. TAGTTTTTGAACCACCTCTAGGTATACAAAAATAA 1519 30 100.0 38 .............................. TTTTTAATTCCCCCTAATTGTTAGCTTATATGAGCCAT 1451 30 100.0 35 .............................. ACGAAACCTGCATCCTTTTGTCCATAAATTTGTGT 1386 30 100.0 36 .............................. TGCTCTATTCCTCCATATATTCTATGCTCAACACAA 1320 30 100.0 36 .............................. ATACTTTTAGGATAAATTTTAAAATAAAAAAAGAGT 1254 30 100.0 36 .............................. CCTTCTTGCACCCCTACAAATGCTTGTAAACTCTCT 1188 30 100.0 36 .............................. AAGTTATATATATTTTTAAAACCTTGATTTTCTTTT 1122 30 100.0 35 .............................. ATATCTTTGAGTGCCACTTTTTGAGCGACACCCTT 1057 30 100.0 36 .............................. TCCTTTCTTTTTGTATTTGTTTCCTCAAAATATTTT 991 30 100.0 36 .............................. CTTTGATATTGTAATAAGATAATTGTTTTTTGCCAT 925 30 100.0 36 .............................. TCAAAAATAACTTTATTATCTTCAATGTGAAATTTT 859 30 100.0 36 .............................. AGAATATATTGTTTTTGTTATAGATGGTGATGAAAA 793 30 100.0 36 .............................. CTCATCCCCCATTCAACCAATGGTAATCTATATATA 727 30 100.0 34 .............................. CTTGTTCGACTGCACTTGCCATATTTTGTGTTTC 663 30 100.0 35 .............................. TCAATAATAATTCATTATTTAGGTAAAAATATGGA 598 30 100.0 37 .............................. TTTTTAGACTCTTCTTGCTTAAACGGTTGTACAACAA 531 30 100.0 34 .............................. ACAATTTTGTGAACATTTTTTCTAAAAGGTTCTG 467 30 100.0 36 .............................. AATTCAACATCTTGTATATGTTCTTTTTCTTCTTTT 401 30 100.0 37 .............................. CCAGGCACATATCCGTCTTCTGGAGCTTTTACCTTAA 334 30 100.0 37 .............................. TTGTATTTTGCAATTAAAGTATTCTTTTGTTGTTCAG 267 30 100.0 34 .............................. CTTCATGGAAAGTATAAACAAATCAGATTTATTT 203 30 100.0 36 .............................. CAGTCAATGCATACCACTATTGACGGTTGGGCAATT 137 30 100.0 36 .............................. AAAATCGCTTCTGCGATTGCTTTATTGTCTCCTCCA 71 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 24 30 100.0 36 GTTGAACAATAACATAAGATGTATTTAAAT # Left flank : ATTAGGCCTAGATAGATGATCATCAAATACAGAACTCGGCTTATAGACTTATCTCGTATGTGAAAACCACCAGGTTAATGCCTGGTGGTTTTGTTTTTTTGACACCAAGTTTGTAAATCAATAATAAAGTTATATTTAATAATCAATAAATAAAGGCCATAATAATTAATAGTTCAAAATTAATAAGGTTTAATATGTCAAAAATATTTAGGTGGAATACAATGGGTAAATAAAAAAATATGGAGACCAAAAAATACTTCAAAAATATTTTCATAATACTATTGATTGAGTTACTACTAAATAATAATAAATAAGGCTATTGTTTTCCCAATCGATTCATAGAAGTAATATACCTGAATCTATTGATTTTACAAGGTTTGTTAAGGGTTTGTTGCAAAAAATTTAAATTATCAAAATTGGTTGGGAAAAAACTTATGAAATCCTTTATTTTCAATGGGTTTAGGGGTATAATAAAAATAAGAAATGGCTATTTTACTATG # Right flank : TATATTATTACTATAATAGTGCATTTTAAATTGAATAATTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 4189-4744 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENJ01000072.1 Clostridium novyi A str. 4552 Contig72, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4189 30 100.0 35 .............................. AGATAACTATATAGACTATATGGATATTCATATAC 4254 30 100.0 36 .............................. TCTGATGTTTAATTATTATAGTCGTTTTTTACTAAA 4320 30 100.0 35 .............................. TGGATAACTGTAATATAGGTATTAGTTATACCTTG 4385 30 100.0 36 .............................. AGTGCTTTAGTATTCTTCGCGCTCGATGTTATGTCA 4451 30 100.0 36 .............................. TCTGTATCTACATCTATTTCACTCACTGTTAAATTG 4517 30 100.0 37 .............................. CAGTTTTGCTGAAACAACAATAGAAAATGCTAAGAAT 4584 30 100.0 36 .............................. TTTCTACTAATAGGTGTACCGTTTAAGATTAACTTA 4650 30 100.0 35 .............................. AGAGAATAGAGTCCTCTATTTGGAAGAGGATATAA 4715 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 100.0 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : TACTATAACCTTATTAATCAATTAGGAACAGAAGGATTGCCTGAAAATACATATAAAATATACTTCAATCTTATTAACGATGATTTTATAAGTTCTGATGAACTTAAATTAGCATTAATTGACTATAGTATTTCCTTATATCCCAATGATAAAAGTGATTATAAAAATAAATTACTAGCTATAAAAGCTCAACTACAAAAATAATTGATATAAAAAAATTTTATTAACTCCTGTTTTGAAGGCATTGTTTTTTGTGTTAAACTGCATTCATATTACATTAATAGATATTTAAATAGCAGAAGACTTAATATTATAAAAAATATTTTCCCAACCGATTCATAAAATAAAATCTCCTAGACCGCTTAATTTTAAAGGGTTTGATAAGGTTTTTCTATGAAAAAATTAAATAATCAAAATCGGTTGGGAAAAAATCAACGAAAGTGTTTATTTTCAATGCTTCTAAGGGTATAATAAAAATAAGGAATGGCTATTTTACAGTG # Right flank : TTTTAGAAATTCGTGTATAATAGTAATTGGATATTATGTATATTTAAATTAATTTAATTTAATCAAAGTATTTTATAGATGAAGTTATTAAGGGAGTGATTATATGCCAGAAATAAGTTTATTTTTTGGAATAAGAGTTACTATAAATTATAATGACCATGTACCACCACATTTTCATGCTGAATATAATGGAAATAAAGTTTTAGTGGATATTATAAATTGCAAGGTAATAAAAGGATATTTTCCTAAAAGACAATTAAAATTAATTCTTGCATGGGCTGAAATACATAAAGATGAGTTAATGCAAAATTGGGAACTTGCAAGAAGTCATCAACCATTATATAGAATTGCACCACTTTCTTAGGAGGGATAAGCATGGAATATATGCCAGAAGTTATACAAGTTATTCCTACAGATAACTTTAAGGTTTATGTGTATTTTGATGATGGTTCTATTCATTTATATGATGCAAGCGATTTAATAAAAAATGGAATTTTCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [71.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 3798-3639 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENJ01000055.1 Clostridium novyi A str. 4552 Contig55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 3797 29 93.1 36 ...................GA........ TTGATATTTATTCATTCGTTCACCTCCTTGGTTTGC 3732 29 100.0 36 ............................. TTGCAGACGTCGGGGATTATTTGGATTTTGGACAAA 3667 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ==================================== ================== 3 29 96.6 36 GTTTTATATTAACTAAGTGATATGTAAAT # Left flank : CATTTTATAGGAGATGAAAAATACAAACCTTTAAAAGCGTGGTGGTAATTATGTTTGTTATATTAACTTATGATATTGAAGAAAAAAGAATAAATAGAGTAAGAAAAACATTAAAAAAGTACTTAACTTGGACTCAAAATTCGGTGTTTGAAGGAGAAATAACAGAAGGGAAATTACATAAATGTCTATCAGAAATAAACAAGAACATTGACAAAAAAACGGATTCAATATACATTTATAGAGTAAAGATGAGTAAAAATATAACAAAAGATGTAATAGGTATAGAGAAAAGTTTTGATGAACTATTTTTATAATTTGCAGTATACAAAACAAATGTTCTTATACACCGAAGGCATTGATTTGCCTAGGGTTTAATACTATATTTTTTAAATCCCAAAAACACAACTGAAGGTTTACTGCAAAATTGATAAAATTAGACTTTAAGCTATTTAGCTAAAACATAGTCATACCAATGTGTTTAGGTGTTTTTAATTTTAGGG # Right flank : ATAAATTGGTAAAGAAATTCGTGAACAATTGATTTAACACTTAAACAAAGTAACTAAAAACTGAATAAAAAGGATAATTAGAGGAACATTAATTAATAAATTAATAATATTTAAAGGAGTTGCTTTTATGAGTTTAAATCCATTTGAAGAAAAAACAGTTTGTGTTGAATCTACTATTGAAGATTGGGGGAAGCTGTATCCTCAAAAATATGATAAAAATGAAGTAGATCCATACACTAAAACACGTATAATTTTAATGAACGGTACAGAATTTGAAGCTACTTGGTTTTCACATCAATTTTCACGTCACTGTGATAATAATGATGTAAGACGAGAATTAGCTCTTATGAGAAGAGTAGAACAGCAACAACAAAAAAAGATAAGTAATTTAAGACCATTAAATGAAACTATATTAGAAACAACCATAAGTTATGAACAACTTGCAGTTGATTTAACTTGTGCTCTTGCAAAAAATGAAAAGGATCCTGATGTAAAAAATG # Questionable array : NO Score: 4.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.95%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 16252-17235 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENJ01000055.1 Clostridium novyi A str. 4552 Contig55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================================================================================================================================== ================== 16252 28 72.4 203 .-AA.....G..G.....T...AT..... GGAGCTAGGTTACATAAATTTGCAGTATATCAAACAAGTGTTCTTATGAGTACAAAGCATTGATTTACCTAATGTTTAATAGCACTTTTTTAAAATTCAAAAAACACTACTGAAGGTTTACTGCAAAATTGCTAAAATTAGGCTTTGAGCCATTTAGCTTAAACATAGTAATACCAATGTATTTGAGTATCTTTGATTTTAGG 16483 29 100.0 37 ............................. AGAACGGTGATTGAATTTATAAAAATAAGATTTGACT 16549 29 100.0 37 ............................. AAAAGAGATGTGAGTGTAAAAATAACTATTCAAACAA 16615 29 100.0 37 ............................. CCAAATAATCTACACTCAATGCAACAGTTAATATATC 16681 29 100.0 37 ............................. AAGAACCTAATGGCGGAGGTGGAACTATTATCGCATT 16747 29 100.0 36 ............................. TATGAATATTCAATTGAATTTAGTAAATTACTAATA 16812 29 100.0 38 ............................. TTTAGCCTTTTCGAGTTCTTGCATTTCGTCGTCTTTGA 16879 29 100.0 36 ............................. TCTACTTTTTTTAATTCTTCATACTTCAAAATTCTA 16944 29 100.0 37 ............................. GATAGTGTGGCTCGTACTATGCTTAAAGGTGCATTTT 17010 29 100.0 35 ............................. TATTTCGTATTTCAAATCGTATATTTCATTTTCTT 17074 29 100.0 37 ............................. GAAAGTAATAAAACAAGCAGGAACAAGTAAGGTTTAT 17140 29 100.0 38 ............................. ATTTATAAAATTCATTTTTCTTCTGTATCTTTTCTTAT 17207 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =========================================================================================================================================================================================================== ================== 13 29 97.9 51 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : ATCTAGCTATTACTCCAAGAGATAATGCAATGAAAGTAATTGGACTAGACAATTTATTCTGTGGTGGAGAAAAATCTGGACTGTTTGTAGGACATACGGAAGCAATATCTACAGGTTCTCTGGCAGGAGCTAATGCTGTAAGACATGCAGCAGATAAAAATATGATTGTACTTCCAAATGAAACAGTCATAGGCGATATTATTGATTTTGCAAATAAGAAATTTTTAAAAGATAAGGACAAAAAAAGTAGATTTACATTTGCGGGATCAATATACTTTAATAGAATGAAAGAAATAGGACTATATAGTACAGATAGCAAACAAATAGAAGATAGAATAACAAAACTGGGTCTTAAAGGAATATTTAATGAAAAGATTCTTTAGATAATATAGGCACTGTAAAATGAAGTGTTTCTTGTCAAGTAGACAGTGAAGCACTTCAAAAAAGGTGTCTTATATTTTTTACAAAATTGTATTTAATAAGTAAATATCAATTACTAT # Right flank : TGTAGCTGGTGTTACAGTATT # Questionable array : NO Score: 4.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-1.40, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 6993-4839 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENJ01000076.1 Clostridium novyi A str. 4552 Contig76, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================================================================================================================================================================== ================== 6992 30 100.0 36 .............................. TTATTATTCTTAAATGATTGTACAAGATACTTTTCG 6926 30 100.0 36 .............................. CAAGTATACGATTAAGTCATGTAAAGAGTATAATGA 6860 30 100.0 37 .............................. TTAGTACAGTTATAAGTATATCACCATGCATTACCAA 6793 30 100.0 37 .............................. TATATCCGTATTGTGTATTGTATCCAAATATATTTTC 6726 30 100.0 36 .............................. CAGAATCTCAAATGGCTATAATTAATAAATACAAGG 6660 30 100.0 34 .............................. CTCCAAGCATGAACGTAACTGCCAATTAAAAAAG 6596 30 100.0 35 .............................. CTATCTGTATCAGTTATTTCGGCTATCCATTCTTC 6531 30 100.0 36 .............................. ATAGTCCATTAGGGAATTTAAAACTGTCACATAACA 6465 30 100.0 36 .............................. AAGTATTTTTGTATCTTCGCCACTTGTGTAGGTTTG 6399 30 100.0 35 .............................. CCTAATAAGTTAGGTAAAAAATCTCCATATGTAGA 6334 30 100.0 36 .............................. ATCATTATTTTTAATTCTCCACCATATGGTTTGTTA 6268 30 100.0 37 .............................. CCTAAAGCTATCATTCTTTCCTCAACAGTTGTACCCG 6201 30 100.0 37 .............................. ATGCATTACAAGAATTAGATGAAATAAAAGAATTTAA 6134 30 100.0 36 .............................. CGCAAATTTCCTCTTTTGAGGAATTGTCCATAAAGT 6068 30 100.0 37 .............................. AAATAATAATCTTTATTATATTTGCTTTGTCCATAGA 6001 30 100.0 36 .............................. CATTTTTTAAATATTGTATTTTATCTAATAATATCT 5935 30 100.0 38 .............................. TATCCTCCGTTCCTTCATCAAACTCCACATTTTGGCAC 5867 30 100.0 36 .............................. ATTTGATATTTAGTTATCAAGGCGTGTCTTTTTACG 5801 30 100.0 34 .............................. CTTGTGTACAACGCATAAATACAATATGTTGATC 5737 30 96.7 35 ......T....................... GATAATGTTGTAAAATATCAATTAAATTATAAAAA 5672 30 100.0 36 .............................. TGTATTGTTAGATGAAATATTCCAAGCACCTACATC 5606 30 100.0 36 .............................. TAGAATAAAGATATTATAAGTATGTATTATAGTATG 5540 30 100.0 36 .............................. ATTTTTCTATAAGTATTATAATCTTTTTCTTTCTTT 5474 30 100.0 37 .............................. TTTCCCTGTTAATCCTATTGATACTATAAATATTAAT 5407 30 100.0 35 .............................. TCTTGACTATATTCTCTTTGTGGATAATCATTAAA 5342 30 100.0 36 .............................. AAGGTCAACAATACTTCTTGACCGTCATTTGGCTTT 5276 30 100.0 35 .............................. GTATACTGTACAAGGTAGCATTGTGACACTCAGCC 5211 30 93.3 36 ........A......G.............. CAGTTTTACTATGATTAACTATTTGCTTAACAGAAC 5145 30 93.3 35 ........A......G.............. ATCCAACCACGACAGTAATATACAGGTTTTCCATA 5080 30 86.7 181 .........C.....G.A......A..... TCTAGACCTAACTTATATGTAATACATGGAAGTGGGTTAATTGTTAATACATAATTTATTATAAAAAATACTTATAAGTATCAATATTTTATCTCTCTATAATTTTATAGAGAGATTTTTTATTAAAAAATTTTAAAGTATGAATAAAAGAAGATTTTATGGAAACAATTTTAATATAGGA 4869 30 76.7 0 T..T..A..C....A..T....T....... | T [4849] ========== ====== ====== ====== ============================== ===================================================================================================================================================================================== ================== 31 30 98.3 41 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : TATAGATAATGAACCCTGGACTGATAAAATGGATATTGAATTAATAAAAAGAAATATAAATAAAAATTTAATAAAAAAAATAAAAGCAATCCAAGGTATAGACGAGTTTTTAGAACATGACATGATAAAAAATATAAAATTAAAAAACAGAATGCCTATAGGATGTAAATATAAGCGTATTAAATTACTAGGAAATAAATTTGAAATACAAATTAAAGAAGATCCTATATCACAACTAATGGCAAATGTAGCTTTAGCAGTAGGTATATTAGAAAAGAATTCTCTTGGATATGGTTATTGTTTGTATAAGGATAACTAATCATTTTCCCAACCGATTCATAAAGTGAAATCTCCTAGAACGCTTAATTTTAAAGGGTTTGATGAGGTTTTTCTATGAAAAAATTAAATAATCAAAATCGGTTGGGAAAAAATCAACGAAAGTGTTTATTTTCAATGCTTCTAAGGGTATAATAAAAATAAGGAATGGCTATTTTACAGTA # Right flank : ACAAAGTATTGTGTTTATATGTAGTGTAAATAGTAACATGGGATGTTTGATAGAGAATTTAAAGGAGGATAGAAAATGTGAGAAGTTTACAGGTTTTTGAAATTAAAGTAGATGTTTATACACTAGAAGACATTAAGATTCAAGATCAAAGTATAAAGATTTCTAAACTTATAGATAAGGCATTATGTAAAAGTGATAGACTTTTAAAATTTCATGAAAAAAATTGTTTTAAAAATTATTGTTTTAATTGGTTATATCCTGTTGAACAAAACTTATATAGAAAGGGTAAAATATATACTTTTATTATTAGAACTGTAGATGAAGATTTATTAAGATATTTTAAGGATTATCTTGTTAATGAGTATACAGAAAGCCTAAAAGTTTTAACTATAAAAGTTAAAATAATTCCGAAGAAGGCAATTGAAAAAATCTATTCAATTACTCCTTTAATTGTTAAAACGGAAGGATATTGGAGAGAAAAACTTACCTTTAAACAATTT # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.45, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //