Array 1 39-614 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUAB01000081.1 Vibrio cholerae strain 29 contig00081, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 39 28 100.0 33 ............................ CATTGCATAAGCAGCCCTCAGTTATGGAGATAA 100 28 100.0 33 ............................ TCATCTTACTGAATCGGCTTTCATGCTTGCTTA 161 28 100.0 33 ............................ CAGCGAGCACATACCAAAAGAACTGCGCTATTT 222 28 100.0 33 ............................ CTCTTAGTGAGTCAGATAGTGAAATTTTAAGCA 283 28 100.0 33 ............................ TATGGTTCTTACATTTAATGATGCTGTTGAATT 344 28 100.0 33 ............................ CACACGCCAACCGAGGTAAGAAACCACGTCAGG 405 28 100.0 33 ............................ TCAAAAATCGTGCAAAAGGTACTTTGTAGCTCC 466 28 100.0 33 ............................ TAGATGTAAGCGCAGGGGCTATTTTCTGTCTCA 527 28 100.0 32 ............................ CTCAGCCAACCCCATGCTAGGAGTATAGATAT 587 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : GTTTCCTGAAAACGCGCTTTTTGGATAGGTTGAACTGGG # Right flank : TAGCGTATATAGCCCAGATTTTTCAGCACTTTAGTCTTCCCCACGCCAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3587-3256 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUAB01000048.1 Vibrio cholerae strain 29 contig00048, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3586 28 100.0 33 ............................ TGCGGCAAGTGCGGCGGTGAATTAAAACAGTCT 3525 28 100.0 33 ............................ TTGAGCAGATACTGATGCTTTGTCAGTGGTTTT 3464 28 96.4 33 ...........A................ TCAGTCGCAAGGCTTTCTTCATTCTTTGACCGC 3403 26 92.9 33 ....................--...... CAGCTATGACTTTTTAGTTGTGGATACTGCCGG 3344 28 100.0 33 ............................ TGAAAATGGCTTTGCCGCCCAGCGATAGTTTTA 3283 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 97.6 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : TCGTTGCGGGACTTAACCCAACATTTCACAACACGAGCTGACGACAGCCATGCAGCACCTGTCTCAGAGCTCCCGAAGGCACTCCAGCGTCTCCGCTAGATTCTCTGGATGTCAAGATAGGTAAGAA # Right flank : TACTTGCCAGCCATTTTGAAGCGATTCAGCGTGGTCTTCCCCACGCAGGTTGGATTACAGAGTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATGGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTAGCTATAAACCTAAACCAGAGGGGATTTGTGACAACAGC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACACAGGTGGGGGTGTTTCT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.40,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 136253-136708 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUAB01000010.1 Vibrio cholerae strain 29 contig00010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 136253 28 100.0 34 ............................ TCTCCGGCCTCATCGCATTTAAAGACCTTGCTCA 136315 28 100.0 33 ............................ TATCTAGTGTCGGTCGCAGCTGATACAGCCACT 136376 27 96.4 33 .....................-...... TAAAGAGTGGGCTGACATGATGGAATCAGTAGG 136436 28 100.0 33 ............................ TGGTTAAAGCAGCCATCCAGGGAGAGCCTGCTA G [136458] 136498 28 100.0 33 ............................ CTCAGGGAACAAATAGCCAAAGCCACCTTTGGG 136559 28 100.0 33 ............................ CCCTTTTGAAAAATGGCTTGTTCCATATTGACT 136620 28 100.0 33 ............................ CGTAGGCGCGGCAGTACGTAAGAGATGCAAGAG 136681 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 8 28 99.5 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACACGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATCTGTTACAACAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : CAACTCCTGCATCTTAAAGAGGGCTAGAAATGAGTCTTCCCCACG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //