Array 1 523843-524583 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044429.1 Listeria monocytogenes serotype 4b str. LIS0087 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 523843 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 523908 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 523973 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 524037 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 524103 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 524167 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 524230 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 524294 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 524359 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 524423 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 524489 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [524512] 524555 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 95.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 2579859-2577907 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044429.1 Listeria monocytogenes serotype 4b str. LIS0087 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2579858 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 2579792 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 2579726 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 2579660 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 2579594 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 2579527 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 2579461 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 2579395 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 2579329 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 2579263 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 2579197 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 2579131 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 2579065 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 2578999 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 2578933 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 2578867 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 2578801 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 2578735 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 2578669 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 2578603 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 2578536 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 2578470 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 2578404 36 100.0 30 .................................... TAGTTATTTGCTTAGAAATGTCATCCATCA 2578338 36 100.0 30 .................................... CTAGAAGCTTTGACATTAATATTACGCTTA 2578272 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 2578206 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 2578140 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 2578074 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 2578008 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 2577942 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 30 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //