Array 1 302331-303337 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVGD01000106.1 Pseudomonas denitrificans (nom. rej.) strain 461_PDEN 877_326272_4800392_407+,...,605+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 302331 29 100.0 32 ............................. CCGAGTCCACCGGACTGACGCTGCACACGAAG 302392 29 100.0 32 ............................. GCGATGAACCCCGCTCACATCTTGTTCGAGTG 302453 29 100.0 32 ............................. ATGGGCGTGCGCAGCGTGCGCGGGCTCGTCCT 302514 29 100.0 33 ............................. TTCATCTTTGCAAACCACCCGACTAGACCCCGA 302576 29 100.0 32 ............................. TGTGGCTCGCCGCGTTGAGCAACAACAGCGCA 302637 29 100.0 32 ............................. GCGGTAATCGGGGTCGTACTTCAGGCCCTCCC 302698 29 100.0 32 ............................. TACGGGAATGATGTCTGGTGCCACCTGCCAGA 302759 29 100.0 32 ............................. CAGTTCTCTGTCGTTCATTGCTTGGCTCCTTC 302820 29 100.0 32 ............................. CATGGCAAGGGCCGCTGATTTCCGATGAGGAA 302881 29 100.0 32 ............................. CCCTTCGCTGACCGTCATACCGTTGAGGCGCG 302942 29 100.0 32 ............................. GATTATGCCGTGGCTCGGGGCGTGGAAGCCGG 303003 29 100.0 33 ............................. ACAAGTTGCCGCTGTCGAAGGTGACGACGACCG 303065 29 100.0 32 ............................. GCCGTGTCGTTCGATGGTGATGTCGTGCTGCT 303126 29 100.0 32 ............................. GTTGTTCTAGAGTCCGTTCAGGAGATGCTTCT 303187 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 303248 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 303309 28 79.3 0 A..........A..C..-.....A....T | C [303313] ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTTGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCATGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 312512-314190 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVGD01000106.1 Pseudomonas denitrificans (nom. rej.) strain 461_PDEN 877_326272_4800392_407+,...,605+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 312512 29 100.0 32 ............................. GTTATAAGGATCGCCAAGGGGTTAGTTCACGG 312573 29 100.0 32 ............................. CCCGGCTGGCCGCGACACGCGCTCGCGATGCC 312634 29 100.0 32 ............................. CGCTCGGCAATGCCGAGGTGTGGGAGGCAGTG 312695 29 100.0 33 ............................. CGGCTGGTGGCGGGACAACGACACGGGGTACAT 312757 29 100.0 32 ............................. GCTACCAGTACAGCCGTGGGATGTGGGTCGAC 312818 29 100.0 32 ............................. CCCTCATTAGCCACGCCGTCAGTAGTTGGCTG 312879 29 100.0 32 ............................. CGGGCAACGGTCCATACCAGTCTCATTCCCCA 312940 29 100.0 32 ............................. GGGTATGGAGCATGAGCGAAATCTGGAAATGC 313001 29 100.0 32 ............................. TTCATGGACGACCCAGGCGAAGGCCAGTACAT 313062 29 100.0 33 ............................. CCGGCCGCCGGCCGAGGTCCCTGTCCGACAAGC 313124 29 100.0 32 ............................. TCACCGATGGCCTCGGCGCCGAGGGTATCGAT 313185 29 100.0 32 ............................. GCACCCGCCGGGCGGGCACACAGGGAAGGAGG 313246 29 100.0 32 ............................. ACCTAGTGATCCTCGATTGCGGTCGATGGGAG 313307 29 100.0 32 ............................. GTTGCAGCATCGCCGGCGTGGCGGGCCTGAGC 313368 29 100.0 32 ............................. GTCAACCTCGTTCCGTACCGCGTCACGCTGAC 313429 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 313490 29 96.6 32 ...........A................. ATGTGCTTCCAGCTTTCGTCGTCCAGCTTCCG 313551 29 96.6 32 ...........A................. ATAAAAGAGGCCGTCAAATACCGATGCGTCCT 313612 29 96.6 33 ...........A................. TGAAAGTCAGCGACCATGCCGGCCGGCCAATCC 313674 29 96.6 32 ...........A................. CCCTTCATGCCGGTGCCCTTCTGCCCGCAGGG 313735 29 96.6 32 ...........A................. GTGGTGCCGTGTGAGCCGGGCTTGGGGTCATG 313796 29 96.6 32 ...........A................. GTGATCCGCTGATAGTCGCCGTGCCCCAGGCC 313857 29 96.6 32 ...........A................. CTGCTGCGCGTAGGTTGGTGGCTCGCTATGTT 313918 29 93.1 32 ...........A.........T....... GGCCTATTCCGGCCAGTCATCTCAGCTTGAAC 313979 29 96.6 32 ...........A................. GTCACCGGGCAGAGCAACACTGCTGTTGGCAA 314040 29 96.6 32 ...........A................. TCGCCGGTGCGGCCGTGGGGCTACGAGCGGCC 314101 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 314162 29 89.7 0 ........T..AC................ | ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.2 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGACCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTTTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.93, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //