Array 1 229263-229460 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QXGV01000001.1 Staphylococcus aureus strain NMB001092 scaffold_0001, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence            	Spacer_Sequence              	Insertion/Deletion
==========	======	======	======	===========================	=============================	==================
    229263	    27	  92.6	    29	.A.....................C...	AGCTGACAGAAAGTCAGCTTACAATAATG	
    229319	    27	 100.0	    28	...........................	GAATTTCAAAAAGAAATTCTACAGACAA 	
    229374	    27	  96.3	    29	.......................C...	AGGTGACGAAAAGTCAGCATACAATAATG	GGAA [229384]
    229434	    27	 100.0	     0	...........................	|                            	
==========	======	======	======	===========================	=============================	==================
         4	    27	  97.2	    29	TGCAAGTTGGCGGGGCCCCAACATAGA	                             	       

# Left flank :   AGCACTTTGAAATCGATCCTGTAGAACCAAAATATTTTGGGGAAGTAGCAAAATATTATCGCCATAAGGATAATGGTGTTCAATTTGGTTTGATTACAAGTGTTTCACAATCATTTTGTTCTACATGTACACGCGCAAGGCTGTCATCAGATGGGAAGTTTTACGGATGTTTATTTGCAACTGTCGATGGATTTAACGTTAAAGCGTTTATTCGTTCTGGCGTGACCGACGAAGAATTAAAAGAACAATTTAAAGCTTTATGGCAAATAAGAGATGATCGATATTCAGATGAGAGAACTGCTCAAACAGTTGCCAATCGTCAACGTAAAAAGATAAACATGAATTATATTGGTGGTTAATGTGTAGGGACCACTACATATTAAATCATTAGAGATGTTTTAATATTTCTGTCTTACTCCCTAAAATACAATATTATTTATTAAAGTAAAAACGGTCATATCTATGCCAGATTTAATAGAAATGATCGTTTTTAAAGTTTT
# Right flank :  AGAATTTCAAAAGAAATTCTACAGACAATGCAAGTTGGGGATCAACGAAATAAATTTTATGAGAATATCATTTCTATCCCACTCTTAAGAATCACTACATAATAAATCTTTAGTGGTTCTTTAACATTGATGTCACACTCCATGCCATTGAGTTGTAATATATCTTTTTTAGGTATAAATGTTGTCGAATAAACAACAAGTTGTCCAAAAGATATAAATCTAAACAAGATATAGCCAGCAATTTAATATTTGTAATAGATAAAATGCTAAGTTTGATATATAATAAATTTAAGTAATTGTATAATAATATGAATTACAAACATCTAAGAAGAAACATAGGAGGCATCATATTATGAGTAATAAAGTTCAACGTTTTATAGAAGCAGAAAGGGAGTTAAGTCAGTTAAAGCACTGGTTAAAAACAACACATAAGATTTCAATTGAAGAATTTGTAGTCCTTTTTAAAGTGTATGAAGCTGAAAAGATTAGCGGTAAAGAAT

# Questionable array : NO	 Score: 2.52
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     TGCAAGTTGGCGGGGCCCCAACATAGA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [7,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-4.00,-5.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [2-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.78,0.37   Confidence: MEDIUM] 

# Array family : NA
//


Array 1 215-11 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QXGV01000094.1 Staphylococcus aureus strain NMB001092 scaffold_0094, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                           	Spacer_Sequence                        	Insertion/Deletion
==========	======	======	======	==========================================	=======================================	==================
       214	    42	 100.0	    39	..........................................	CAAGATGGCACAGTATCATATGGCGCTCGCCCGACACAA	
       133	    42	  95.2	    39	...................................A...C..	GCAAACGGCCAAGTATCATATGGCGCCCGCCCAACATAC	
        52	    42	  95.2	     0	..G.................C.....................	|                                      	
==========	======	======	======	==========================================	=======================================	==================
         3	    42	  96.8	    40	AACAAGCCAAGCGAAACAAATGCATACAACGTAACGACAAAT	                                       	       

# Left flank :   TTGGATATGAAGCGAGACCAAGATT
# Right flank :  TCAAGATGGCA

# Questionable array : NO	 Score: 2.51
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     AACAAGCCAAGCGAAACAAATGCATACAACGTAACGACAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.90%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [-0.80,-0.10] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [2-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [8.3-25.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,0.68   Confidence: HIGH] 

# Array family : NA
//