Array 1 3958-4855 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFVM01000001.1 Campylobacter lari strain NCTC 12893, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 3958 36 100.0 30 .................................... TTATAGCAATACAAGACCAAAAGTATTTTA 4024 36 100.0 30 .................................... CGCTTTTCCTCGTGGTAATAGGGGAATTTA 4090 36 100.0 30 .................................... TAAGATAGAAAAATTAAGAGAATATTTTGA 4156 36 100.0 30 .................................... CTATTTTTTTAATAATATTCTCAAGATACA 4222 36 100.0 30 .................................... AAGTGATGATGAAGTAGATGAACTTTTTAA 4288 36 100.0 30 .................................... AGCAAGAAAGTAAAGAAGATTGGGATAAGT 4354 36 100.0 30 .................................... TCCTACAAATGAAAATGCATGTTTTGATGA 4420 36 100.0 30 .................................... CAAATGGTAATAATATGCAAATTAACGGCA 4486 36 100.0 30 .................................... TCCTGCTATGCGGGGGCGTTATAATATTCT 4552 36 100.0 30 .................................... AGAGGAGGCACATTTACTCTATTGACTATG 4618 36 100.0 30 .................................... AAAAAAATATTTAGCTCTTGACAAAAATCA 4684 36 100.0 30 .................................... AGGAAATTGAATTAATCTTAGTCAATTTTA 4750 36 100.0 31 .................................... TTCTTCATTATGAGAACTAGGTAAATCTATA 4817 36 100.0 0 .................................... | A,T,G [4846,4850,4852] ========== ====== ====== ====== ==================================== =============================== ================== 14 36 100.0 30 GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Left flank : TAGCAGCGCTAATCCCTGCTTTTTTTATTTTAAGGTATTTGGGTATAGAAACTTTGATTTTAGTAGCGATTTTACTTTTTTTAATCTCTATTAAAGTCATCGACCAATACGAAAAACAAACAGGCAAACACGATGATAAACACATCGTTATAGATGAAGTTGTTGGGGTGTTTTTAGCCTTGGCAATTTGCGGACAAAGTGTTTTTACTTTTTTACTTTCTTTTGTTTTGTTTAGATTTTTTGATATCACAAAACCATCTATCATAGGTAAAATCGACAAAAAAAACCAAAGGTGGTTTAGGTGTAATGCTAGATGATGTTTTAGCAGGAATTTTCGCAGGATTATTTAGTGCTGTGATTTATGGAATTTTACTTAAATTTGATCTTTTATGGTTTGATATAAGCATTATGGAGATATTTTAGCTCCATAAATTTGTGAAGCTATTTTCCAATTTTCTTTAAAGCAAAATAACAATAATTCTAATTGTATTTGCTATACG # Right flank : TAGATCTTTTCCAAGAAAAAAACTAGTTTTCTTTGTGGATAAAGATCTATTTTATCATAAAGAAATTTAAAAAGAGACTAAAACTATAGATTTACCTAGTTCTCATAATGAAGAATTTTATCATAAAGAAATTTAAAAAGAGACTAAAACTAAAATTGACTAAGATTAATTCAATTTCCTATTTTATCATAAAGAAATTTAAAAAGAGACTAAAACTGATTTTTGTCAAGAGCTAAATATTTTTTTATTTTATCATAAAGAAATTTAAAAAGAGACTAAAACCATAGTCAATAGAGTAAATGTGCCTCCTCTATTTTATCATAAAGAAATTTAAAAAGAGACTAAAACAGAATATTATAACGCCCCCGCATAGCAGGAATTTTATCATAAAGAAATTTAAAAAGAGACTAAAACTGCCGTTAATTTGCATATTATTACCATTTGATTTTATCATAAAGAAATTTAAAAAGAGACTAAAACTCATCAAAACATGCATTTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 5796-4903 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFVM01000001.1 Campylobacter lari strain NCTC 12893, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5795 36 100.0 29 .................................... TTATAGCAATACAGACCAAAAGTATTTTA 5730 36 100.0 30 .................................... CGCTTTTCCTCGTGGTAATAGGGGAATTTA 5664 36 100.0 30 .................................... TAAGATAGAAAAATTAAGAGAATATTTTGA 5598 36 100.0 30 .................................... CTATTTTTTTAATAATATTCTCAAGATACA 5532 36 100.0 30 .................................... AAGTGATGATGAAGTAGATGAACTTTTTAA 5466 36 100.0 30 .................................... AGCAAGAAAGTAAAGAAGATTGGGATAAGT 5400 36 100.0 30 .................................... TCCTACAAATGAAAATGCATGTTTTGATGA 5334 36 100.0 30 .................................... CAAATGGTAATAATATGCAAATTAACGGCA 5268 36 100.0 30 .................................... TCCTGCTATGCGGGGGCGTTATAATATTCT 5202 36 100.0 30 .................................... AGAGGAGGCACATTTACTCTATTGACTATG 5136 36 100.0 30 .................................... AAAAAAATATTTAGCTCTTGACAAAAATCA 5070 36 100.0 30 .................................... AGGAAATTGAATTAATCTTAGTCAATTTTA 5004 36 100.0 30 .................................... TCTTCATTATGAGAACTAGGTAAATCTATA 4938 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 100.0 30 GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Left flank : TAGCAGCGCTAATCCCTGCTTTTTTTATTTTAAGGTATTTGGGTATAGAAACTTTGATTTTAGTAGCGATTTTACTTTTTTTAATCTCTATTAAAGTCATCGACCAATACGAAAAACAAACAGGCAAACACGATGATAAACACATCGTTATAGATGAAGTTGTTGGGGTGTTTTTAGCCTTGGCAATTTGCGGACAAAGTGTTTTTTACTTTTTTACTTTCTTTTGTTTTGTTTAGATTTTTTGATATCACAAAACCATCTATCATAGGTAAAATCGACAAAAAAACCAAAGGTGGTTTAGGTGTAATGCTAGATGATGTTTTAGCAGGAATTTTCGCAGGATTATTTAGTGCTGTGATTTATGGAATTTTACTTAAATTTGATCTTTTATGGTTTGATATAAGCATTATGGAGATATTTTAGCTCCATAAATTTGTGAAGCTATTTTCCAATTTTCTTTAAAGCAAAATAACAATAATTCTAATTGTATTTGCTATACG # Right flank : AGATCTTTATCCACAAAGAAAACTAGTTTTTTTCTTGGAAAAGATCTATTCTATATTCATAAAGAAATTTAAAAAGAGACTAAAACTATAGATTTACCTAGTTCTCATAATGAAGAAATTTTATCATAAAGAAATTTAAAAAGAGACTAAAACTAAAATTGACTAAGATTAATTCAATTTCCTATTTTATCATAAAGAAATTTAAAAAGAGACTAAAACTGATTTTTGTCAAGAGCTAAATATTTTTTTATTTTATCATAAAGAAATTTAAAAAGAGACTAAAACCATAGTCAATAGAGTAAATGTGCCTCCTCTATTTTATCATAAAGAAATTTAAAAAGAGACTAAAACAGAATATTATAACGCCCCCGCATAGCAGGAATTTTATCATAAAGAAATTTAAAAAGAGACTAAAACTGCCGTTAATTTGCATATTATTACCATTTGATTTTATCATAAAGAAATTTAAAAAGAGACTAAAACTCATCAAAACATGCATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 236163-235269 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFVM01000002.1 Campylobacter lari strain NCTC 12893, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 236162 36 100.0 30 .................................... TTATAGCAATACAAGACCAAAAGTATTTTA 236096 36 100.0 30 .................................... CGCTTTTCCTCGTGGTAATAGGGGAATTTA 236030 36 100.0 30 .................................... TAAGATAGAAAAATTAAGAGAATATTTTGA 235964 36 100.0 30 .................................... CTATTTTTTTAATAATATTCTCAAGATACA 235898 36 100.0 30 .................................... AAGTGATGATGAAGTAGATGAACTTTTTAA 235832 36 100.0 30 .................................... AGCAAGAAAGTAAAGAAGATTGGGATAAGT 235766 36 100.0 30 .................................... TCCTACAAATGAAAATGCATGTTTTGATGA 235700 36 100.0 30 .................................... CAAATGGTAATAATATGCAAATTAACGGCA 235634 36 100.0 30 .................................... TCCTGCTATGCGGGGGCGTTATAATATTCT 235568 36 100.0 30 .................................... AGAGGAGGCACATTTACTCTATTGACTATG 235502 36 100.0 30 .................................... AAAAAAATATTTAGCTCTTGACAAAAATCA 235436 36 100.0 30 .................................... AGGAAATTGAATTAATCTTAGTCAATTTTA 235370 36 100.0 30 .................................... TCTTCATTATGAGAACTAGGTAAATCTATA 235304 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 100.0 30 GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Left flank : ATAGCAGCGCTAATCCCTGCTTTTTTTATTTTAAGGTATTTGGGTATAGAAACTTTGATTTTAGTAGCGATTTTACTTTTTTTAATCTCTATTAAAGTCATCGACCAATACGAAAAACAAACAGGCAAACACGATGATAAACACATCGTTATAGATGAAGTTGTTGGGGTGTTTTTAGCCTTGGCAATTTGCGGACAAAGTGTTTTTACTTTTTTACTTTCTTTTGTTTTGTTTAGATTTTTTGATATCACAAAACCATCTATCATAGGTAAAATCGACAAAAAAACCAAAGGTGGTTTAGGTGTAATGCTAGATGATGTTTTAGCAGGAATTTTCGCAGGATTATTTAGTGCTGTGATTTATGGAATTTTACTTAAATTTGATCTTTTATGGTTTGATATAAGCATTATGGAGATATTTTAGCTCCATAAATTTGTGAAGCTATTTTCCAATTTTCTTTAAAGCAAAATAACAATAATTCTAATTGTATTTGCTATACG # Right flank : AGATCTTTATCCAACAAAGAAAACTAGATGTTTTTCTATGGAAAAAGATCTAAAATATGCTATAATTCTTGCTAAAGAAATTTAAAAAGAGACTAAAATAAGTGGTTTTTGGTCATCCACGCAGGGTTACAATCCCTTTTTTAAAACCATTAAAATTCAAATAAACTAGGTTGTATAAACTTAGTTTTTTTCCTTTCTTTATTTGTTTTTTCATTACTATATTTAAAATCTTGAGTTTTTTCATCATATTCAAAAAGGATTAAGTTCTTATCATCATTCATTTTTTCATTAAAAGAAACCCCACCTAAAAGAATTTGCATATTATCAAACTGTTTTTCTGTTATGGTTAAAACTCTTATATTTCCATAAGGTGGTAAAATTTTCTCTATCGATTTTATCGTTGTTTTTGCCGAAGCTGATCCTTTGCAAATTTTCACATACACGCTAAATTGCATCATGAAAAACCCAAGCTTTATCAATGAGTTTCTAAATTTATTTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //