Array 1 418-1640 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMXG01000040.1 Neisseria meningitidis strain NM1549, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 418 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 484 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 550 36 100.0 30 .................................... ACTATGCCTGTTATTGTTTTCAGCCTTTTG 616 36 100.0 30 .................................... AATCTGCCTTTTTACAAGCTCGCTTTCTTT 682 36 100.0 30 .................................... ACGTTGATGACGGATGTGTCGGGTTGCGGA 748 36 100.0 30 .................................... ACAAATAGAAATACATACGCCGAGTAATTA 814 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 880 36 100.0 30 .................................... AATGGTAAAGGTTTCTGTTGCGACCCGAAT 946 36 100.0 30 .................................... AAATGCCGTTTTCATCCGGCTTGAACATTT 1012 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 1078 36 100.0 30 .................................... AACTGCCAATTATCATACATAAGATTTTGC 1144 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 1210 36 100.0 30 .................................... AACCCACGGCGGAAACCATTGCCACAAAAC 1276 36 100.0 30 .................................... AAGCGTCTATGGTGTCCTTTGAGATGTCCA 1342 36 100.0 29 .................................... AAGGCCGCTTTATTTCTGCCATATCGACG 1407 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 1473 36 100.0 30 .................................... AATAAAACCGCAAACCAGTTTGTATCCTAT 1539 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 1605 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TCCCTTTCTCATTTCGCAGTGCTACAATTTAAAATAATAACCCAATACACGATGTTAAGTTGTAGCTCCCTTTCGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG # Right flank : TAATTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.70,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //