Array 1 71912-73399 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXWX01000105.1 Methylosinus sp. 3S-1 3S1contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 71912 36 97.2 30 ..G................................. GCAGCATCGGCGCCGTCGCCCAGCAGAACA 71978 36 100.0 30 .................................... CGCGGCGACGACGCCGATCGGATCGGACGC 72044 36 100.0 30 .................................... CCGGCTCCCGCTTCCAATAGTTTCGCCCGA 72110 36 100.0 30 .................................... GGCCCTATGCTGCGCATGAGCTACGACAAA 72176 36 100.0 30 .................................... TTCGCCGAGCTCGATCACGCGCGGCATCGC 72242 36 100.0 30 .................................... CATAGATGAGCCGCATTCGCGCATCCGAGG 72308 36 100.0 30 .................................... TGGGTTCGCCCGGAAGTGAGAGGATGATGA 72374 36 100.0 30 .................................... CCGACCGTCTGCGCATCGGGGAAGAACGAC 72440 36 100.0 30 .................................... GATCCGCACGCATATTCGCGACCACATCGC 72506 36 100.0 30 .................................... TTTACGACATGACGGCACCGGCGCCGGCGT 72572 36 100.0 30 .................................... TCTGGCGGGCTCGACAAGTCGGCGGGACCG 72638 36 100.0 30 .................................... GCGTGCCGCCGGCGCGCTTAGGCACGGCGC 72704 36 100.0 30 .................................... TGCAAGCGGCGCTGCGTCCCGCTTTCCTTA 72770 36 100.0 30 .................................... CTCGGCGCGCGCGAGTGTGAGAGGGCGCGG 72836 36 100.0 30 .................................... GGCTGCTTTCTCAGGTCATTTGCAATTCGG 72902 36 100.0 30 .................................... CTATCTTGCTCGTGCCAGTTCGCGCCAGCG 72968 36 100.0 30 .................................... GCATGGATCGTGACGCACCCAGAGGCGCGC 73034 36 100.0 30 .................................... GTCGAGTTCTTCGATCAGCTCAATTTCCCA 73100 36 100.0 30 .................................... TACAGCAGCTCGTTCGCGGCGGCGTCTGCG 73166 36 100.0 30 .................................... TCGCCACGGCCTTCGCCGCCGGCTCGATCG 73232 36 100.0 30 .................................... CGTCACCGCCAACGCGTGAGCATCACATGA 73298 36 100.0 30 .................................... TAATCGAATGAAACCAGCTCCCGACGAATG 73364 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.9 30 GCCGTGGCTTCCCTGCCGATTTCCCTGTGGTAGGCT # Left flank : TGAAATCCTACGATCTCGTGTGGCTGCTGCATCTGGTGGGCGACGTCCACCAGCCGCTGCACGCGACCTCGCGCTTTTCCCGGGGCCTGCCCAACGGCGATCGAGGCGGCAACACGGAAACCGTCTGCCTCGCCTTCACCTGCGGCGCGAAGCTGCACGCCTATTGGGACGGGCTGCTCGGCGATCGGGGAAGCCCGTCGGACGCCGAGGCGCTCGCGGCCACCCTGCCCTCGCCCGATGCGACGGCGGCGGCGGTCGACGATCCCGCGACCTGGGTGAAAGAGAGCGAGCGGCTTGCGGAGCAGTTCGTCTATGCCGGGCCAATCGGAGATGGCGCGGGGCCTTTCGCGCTCACGGACGCCTATCAGGCGGATGCGAAGAGGGTCGCGGAACAGCAGGTGGCGCTTGCGGGGGCGAGGCTTTCGCAACTGCTCGACAGGGCGCTTCGGTAAGCTAACTTCCCTGCCGATTTCTGTGGTAGGCTCGCGAACGACATTGCT # Right flank : TCGCTTTGACGTAACGAAATGAAAAATCTGTGATTTTCGTTCTCTTGCCGGGACTAAAATCACAATAATACCAGTTGTTGCGGTGCTATCTTTTCATTTTTCGGCGATTCGCCGATCAGGAGTTTCATGCGCGCGTATTGCCGCTCGGTGACGCTTAATGTGCGTACGCTGCCTTTCGGCGGGAGGTTCTTAGTGACCCTAACGAGATGCTTTTCCACAGCTTCTTCCCCGCGCATCACGCGCGCGTAGACTGACAGTTGCAGCATTAAAAAGCCATCGTCCTTGAGAAAATTTCGAAAACGCGTAGCATTGCGCCGTTCGACTTTCGTCTTGACCGGTAGATCGAAGAAAACGAAGAGCCACATATAACGCACCTCCTCGGCTTTCATGGGGAACTCCCCTTCGGCGTGACGAAGAACGGGAGTTTTAGAATCGCCGCGCTTCCACTCTCCATTGCCTGAACGAGGCCTTCTGCGGCCTTCTCGCTCGCGACGAGAAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTGGCTTCCCTGCCGATTTCCCTGTGGTAGGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,11] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCGTGGCTTCCCTGCCGATTTCCCTGTGGTAGGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.80,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 19182-16702 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXWX01000129.1 Methylosinus sp. 3S-1 3S1contig71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 19181 37 100.0 36 ..................................... CAGCTGCATCACGAGATCCTCGAGCCCGTAGGCGAG 19108 37 100.0 36 ..................................... CCACTGGGTCTTGCCGTAGGTCGTTCCTTCTTCGAC 19035 37 100.0 38 ..................................... TCCGCGACGGTCGCCAATGTCTCCCGCGGCACCGGGGA 18960 37 100.0 37 ..................................... CTCTCGATGCGGAAGCCGCCGCCGTCGCAGCCGCCGC 18886 37 100.0 38 ..................................... TATGGCCGAGCGGATCGGCCTCGGGCTCAGAGCCTATC 18811 37 100.0 37 ..................................... GGCGGTGAAGCAGGAACTTGGGCTAACATCGCCCGAG 18737 37 100.0 39 ..................................... GTTCAGTGCGATGAGATTTGGTCATTCACCTACGCCAAG 18661 37 100.0 36 ..................................... AACGTCCGTCCGGCCCGCGCGAGCTTACGCCTCGTG 18588 37 100.0 39 ..................................... CTCGGTTGCGCTATGCGTAATCGCATGGCGGCCCATCGT 18512 37 100.0 37 ..................................... CATTCAACTCGGCGATGGCATGAGAAAGCTGCGCGTC 18438 37 100.0 38 ..................................... GACGCGACGAACCTGAAAGCGACGTCTGCGGACCCTGC 18363 37 100.0 34 ..................................... TTGCTGCGACTGGCACGGGCAATCGGGTGATGAC 18292 37 100.0 38 ..................................... AACGACTACGGGGTCGAGCTGTTCGATCCGAAGATCGA 18217 37 100.0 35 ..................................... GCCGTCCGCGGCAAGACCGCAGATATCCCCGTGAC 18145 37 100.0 36 ..................................... GAGCGACGATCTGCGCTGCGAAGCCGTCTATGAGCT 18072 37 100.0 39 ..................................... CGACGAGGGTGCGGATGCATGGGCACGATCCGAGGGCGT 17996 37 100.0 37 ..................................... CTGTCGGCGAGATGATGATCATCACGAAGAACAGCCA 17922 37 100.0 38 ..................................... GGGAATCGACTTCTCAAAGATACCGTCCTTGGCCGCCT 17847 37 100.0 35 ..................................... CGCCGAAGAGGTTGGTATCGGAGAGCAGTTCGTCA 17775 37 100.0 39 ..................................... TTGCCGCCGAGGCGCATGCGGCCCCAGAGCTTACGGATC 17699 37 100.0 35 ..................................... CAGTCGCTACATCGCGTGCCTATTATCCCTCCATC 17627 37 100.0 35 ..................................... GCGACAGGAACGACCGCGACATTGCTCCTGGGGAT 17555 37 100.0 38 ..................................... CCCGGCGAGAAGGTCAACCCGATCGATCCGTCGCGCCC 17480 37 100.0 39 ..................................... CCGAGTATAGCTTCTTATGAGAGACACAAGCGTAAACAC 17404 37 100.0 38 ..................................... CTTGCGTGCGGGTTCCTGATGCGGACATCTTCGATGAA 17329 37 100.0 36 ..................................... GCGGCGTGGGGTCCGAATCGTCCGCCGCCGTCTCGG 17256 37 100.0 36 ..................................... ATCGAGCGCCGGGGCACCAAATCGCAGGCTTACCAC 17183 37 100.0 36 ..................................... ATATAAGATCGTGGAGCGGAAGGGCTCTCTCTACCC 17110 37 100.0 39 ..................................... CTCGGCGGCGTCGATCGGCGCGGTGATGGCGATCTCCGC 17034 37 100.0 38 ..................................... GCATTGTCCCGCATCTCCAAACGCAAGAGACTTGTTGT 16959 37 100.0 35 ..................................... TCGGCGACCCGACGGATGGATATAAGGGATTCTAT 16887 37 100.0 38 ..................................... ATCATGTTTTACGGGATGATTCACGGCACGTTCACCGG 16812 37 100.0 37 ..................................... TATGCAGGCACCGCGCGATCCGCAGGCTCACCTGCGG 16738 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 34 37 100.0 37 GCTTCAATGAGGTCCGGGCGGTGAAGCCCGGAAATAC # Left flank : CGCAGAGGCGAGACATTGCATACCGGCCGAGCGCCAGAAAGCCGCCTTCGAGGGCCGCTGGCGCATCCCTTGGGTATTGGCCGATGTGGTCTCGCTCGCTCGGCCGGTCCCCTATGTTCATCCGCGAGGAGCGGTGACATGGGTCGTGCTCGCGGACGACGTCGCCGCGACGATCGCCGATGCGCTCTCTGCGCCATAGCGTTGGGCCGGGGCGGCGCGAGGCGCCGGGAGCAGGAGCCGCCCGCGCTCCGAGCACAGGCGCGACCCCCGTGAGGAATCGAGCAGTTTTCTAAGACATCCATACCTCGGCGTGGCTACGAAAACCGCGGCGGCGGCGCCAGGCCGGCTCCCCTTATTGGGCTTTCGCAGCACCGACGCCCGTGTGACGGACGCTCTTGTGCTTCCGAACATTCCGTCCCGAAGCCCAGCCTCTGCGCTGTGGCGACGCTTGCTTCGTCGAGGCGGAGAATCATGGCCGAACGCGCCGCCGCTGTGGCGGG # Right flank : CGCCTGCTCGCAGCCGGCGGATTCGAAAGCCCGAAGACCTTCGTTTGCGAGCGGTGGATCGCCGCCGCTCGTCCGCCGTCGCCAGAGCGTCGGCCCGAGGTGCTCACGATGACAAACAGCCTTGCAAAAACAACCAATTGCGACAAGCGCGAGCGCTCCCCGGCGAATCCGCCCCGTCGGAGCGCTCGCGCGCCTTCGGCAGCTTAGCGTGAACCGGGTCAGATGACTATCGCCCGTCGCTCGATCGGCGCGAAGGTCTTGCCGAGGCTCTCCACGGCGAAATCGACATCCTCCGCCGGGCCGAGATCCATGATCAATATGTGATCCTCACGAGGATCGATCAGCGTCTCCAGCGTCATCGCCATCTGCGCGCGTCGCGACCCGTCGAGCCGGCAATGGAAGACGGAGAGCTGCACCCAGCGGCCATAGCCGTTCATCGTCTTGAACACGCGGCGCCAGCGCTTCTGATCGCCGATGTCATAGGCGACGATGTAGGAATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGTCCGGGCGGTGAAGCCCGGAAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.20,-15.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA //