Array 1 16204-18979 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNXW01000097.1 Serratia marcescens isolate SM1978, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16204 29 100.0 32 ............................. GATCCAATGGCAATATTCTTCTTGGCGCGGGA 16265 29 100.0 32 ............................. GCCGAGGTCTACCGCTACGGCGCCTTGCATGC 16326 29 100.0 32 ............................. CTGTGCGCCTTTGCCTGGCTACAGGGGCCCGA 16387 29 100.0 32 ............................. CCTCCCTTTTTTGTTGTTTATTTAACTGAAAA 16448 29 100.0 32 ............................. GGATGCTACGAACTCGGAAATGGCAAGACCAG 16509 29 100.0 32 ............................. CTGGGATGGTTACTCGACAGCTGGATGGACAT 16570 29 100.0 32 ............................. GAGTTACAGCATCGAGCCCATCCCAATGGAGA 16631 29 100.0 32 ............................. TTTCACATGTTCAAAGTCGGCGGATCATGGAG 16692 29 100.0 32 ............................. ATATGCAAAGTATCGCAAACTATCTGAACCGT 16753 29 100.0 32 ............................. GGTGATATTCAGGAGTCGATTGCCACGCTCAT 16814 29 100.0 32 ............................. TAAAAAACTAACCAACCGGCTGCGGGCTATTG 16875 29 100.0 32 ............................. CTGAGGCTTACCCTCCGCATCCTCCACCTGCT 16936 29 100.0 32 ............................. GACGGCGAGATCGAACTACCCGGCCAGGTTGT 16997 29 100.0 32 ............................. CACCAACGCGCTGACGCTGGCAGACTGGGCAA 17058 29 100.0 32 ............................. GCATCGGATAGCGCAGAGTCGGAACTGCTGGC 17119 29 100.0 32 ............................. CGATTAAGTGCAAGCATTGTGGTAGTGATGTA 17180 29 100.0 32 ............................. GCACCCGCACCATCACCACTGTCAGCACCGCC 17241 29 100.0 32 ............................. GCAACGCACCTAGCCTTCATCCGAGCACTGTT 17302 29 100.0 33 ............................. GCACTGTCCAGTAACGGCGGCATTACAGCTTGC 17364 29 100.0 32 ............................. TATCCAGATCGATACAGTTACGAATGCCAGTC 17425 29 100.0 32 ............................. TTAAAAGCGTGAAGCTTCACGTCGATACGATT 17486 29 100.0 32 ............................. GCCGAGAGCTGACACAATGCGATCGGGGTACA 17547 29 100.0 32 ............................. CCCGCGAAGAAAGATCAGGCGCGCCATGCTAG 17608 29 100.0 32 ............................. ATGGATAAATCTTATATTTAGTGGGCGATTTT 17669 29 100.0 32 ............................. CATCACTTAGCCCTCGCATCACGTCCACGCTT 17730 29 100.0 32 ............................. TTGCCACAGTGCGATTATCGCTGTTAACCAGA 17791 29 100.0 32 ............................. CGCATACCTTGCGTTCGCAGGATTGGCTTTAA 17852 29 100.0 32 ............................. CACCGCCTCAGATAACTTCGAGGTTAATCGCC 17913 29 100.0 32 ............................. CATTATGAGCAAGTACACATTCGTTGTTGAGT 17974 29 100.0 32 ............................. GTTTCCCACAGTTCAGCGTTGCCGCCTGCTAA 18035 29 100.0 32 ............................. CATCACCGATAATTCGATAATGGTTTACCGGC 18096 29 100.0 32 ............................. ATCGGGGCTACCGGTAATGTAGTCGTGCGTAG 18157 29 100.0 32 ............................. CCACCAAAGACCAATTAAAACAGCTGGATAAT 18218 29 100.0 32 ............................. TAAACGCCACGTTATCAGCACCGACGACCATA 18279 29 100.0 32 ............................. ATTGCACAAAACACGCAGCTCGCCACGATCGC 18340 29 100.0 32 ............................. GCAATTCTTAACCATCAGGGGCGTGAAGGGCG 18401 29 100.0 32 ............................. CGCACCGGCGACACGATGAGCAACACGCTAAA 18462 29 100.0 32 ............................. GGCAGTGTCTCGTTTGGGCATGACGTGAGTAT 18523 29 100.0 32 ............................. GCGGCGAGGATAATCAGCTCTTCTTGTTCTTG 18584 29 100.0 32 ............................. CGCCCGGCATTCCTGGTTCTTAGAGAATTAAA 18645 29 100.0 32 ............................. TACGTTGGGTAACGGGGTATGCATCGATAAAT 18706 29 100.0 32 ............................. TTCTTGGTGTCCATCTCCATTTCACCTTCGGC 18767 29 100.0 32 ............................. CGCTCAGACGTTTCTGGAGTGTCTCGTGGCGT 18828 29 100.0 32 ............................. CAATTATGCCTTGTACGGCGACATGTCGGCAC 18889 29 96.6 32 ............C................ ATTATGTCCAGAAGTGGTTAGAGGAACAGGGA 18950 29 82.8 0 ............C............CGAT | C [18971] ========== ====== ====== ====== ============================= ================================= ================== 46 29 99.6 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GCATCGGTTTCACGCAGCAGCGTTTGCAGCCCGTGGCGCACCGTTTTTTCATCGCCGACGATCGACATCCGCAGCGCCTGCTCGACGCCATATTGCTCGCCGGCGGTCCACAGCGCGTGGATGTTATCCACCGGCGGCGGCAGCGGGCCGGGCGAACCGCGGCGCAGATTGATGAACTGCTGCTGCATCGAACTGAACAGGAAGCGCGCGTCGCTATCGCTGTCGGCGGCGACGACGTTGACGCACACCATGGCGTGCGGCTGCGCCAGCTGTTTGGACGGTTTGAAGTTCTCGCGGTACAGCTGCAGGGCCTGGAACAGCATATCCGGGGCGAAGTGCGAGGCGAAGGCGAACGGCAGGCCGAGTTGCGCCGCCAGCTGTGCGCTGTAGAGGCTGGAACCCAGCAGCCAGAGCGGCACGTGCAGCCCCTGGCCCGGCACCGCCTGCACCGGCTGGCCGGGCTGCGCGTCGCAGAAGTAGTTTTGCAGCTCCTGCACGTC # Right flank : TTTTTATTGGACTATGTGCCAAAACAATCATTCATCAGTGGCTAAATACCGGCGGCATTTAAAAGTAAAACGCTCTCATATCACCCCACCAACTCCAGCCCCGCCACGCGGCGCCAGTAGCCGTTGCAGTCGGCGTGGTCGGTCAAGGCCAGCGGCTGCTCGCCGCGTTCGTTGGCGCGGAAGGCATCGATTTGCGCCAGTGTCTCGGCGCCCTGCGGCGACAGCCGCACGATGTCCACCAGTCCCTGCATGCTCGGGAGCTCGTTGCCGAGGTTGTAGCAGTAGCCGCTCATGGTCTGGATGCCGTTGAGCACGAACACCTGTTGTTGCTCCTGTGAGCGAATCATGCGGCCCTGCGGATACTTGATGCAGCAGGTTTCGCACTCGTCCTTGCCGCGGTTTTCCGAGCGGGCGGTGAAGCAGCGCGCCGAGTAGGCCAGCGGCAGGTGGCCGTAGCTCAGCACCTCCACCTCGAAAGCGTGGCGGAAGCCCAGCTCGTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22384-24366 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNXW01000097.1 Serratia marcescens isolate SM1978, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22384 29 100.0 32 ............................. GCGATATCGAACTTCACTGCAAAGAGCTTGAA 22445 29 100.0 32 ............................. CCGGTATTCCTCGACAGGACAATGAGCGCCGT 22506 29 100.0 32 ............................. CCCATCAACTCGGCCATTGCGGCAATTTCCGC 22567 29 100.0 32 ............................. GGAGCGGGATCGCCATCGCGCACCGGCAAGAG 22628 29 100.0 32 ............................. CATTATGAGCACTGAGAAGCTGAGCGAACTGA 22689 29 100.0 32 ............................. ATGATTAATACAAAACGTGCGTTGATTGATCC 22750 29 100.0 32 ............................. TTGGGCATGGGTAGAAAATGATGATGAAGTAA 22811 29 100.0 32 ............................. CGTTGCTGTTGGCCCATCGCGAAAAGGTGAAT 22872 29 100.0 32 ............................. AGGAATGATTCATGGCTGTCGTGACTCTGGAT 22933 29 100.0 32 ............................. CCACCAGCTGACCTTCGCGTAACCGTCGGCAT 22994 29 100.0 32 ............................. TCCAGATCGTTGAAACCGCCGAACAGGCTCAC 23055 29 100.0 33 ............................. CGCTATATCGCGTTGGGTTCCTGAAATTGTGGC 23117 29 100.0 32 ............................. CCTATATACGGCATCGGCTACACCGCTAATCC 23178 29 100.0 32 ............................. GCCGCACGCCCTCCTTTGCGCTTCATGTCATC 23239 29 100.0 32 ............................. GGGGAATGATGCCTACAGTACCGGTATATCAG 23300 29 100.0 32 ............................. GACTGGTACCAGTCGGAAAATGAACGAATCAA 23361 29 100.0 32 ............................. ACTGGGACTTATTGCGCACGGATGTGCTGGAT 23422 29 100.0 32 ............................. CCGACGAAACGTTTGAACAGTGGACGAAGAAA 23483 29 100.0 32 ............................. CATCTTCAATGGTGACTATCTGGCGGAATTGC 23544 29 100.0 32 ............................. GTAGCGATAGAGCACCGTCAGGGACTGATACC 23605 29 100.0 32 ............................. CACTGCCCAGCTCAGCCACCAGTTCCTCAAAC 23666 29 100.0 32 ............................. GATAATCTGTTAAACGGCGTAACTCTAACAAA 23727 29 100.0 32 ............................. CGATCCGCAGCCAGGTGGGATTGCTGACCAAA 23788 29 100.0 32 ............................. CAACCATGTACCCGTTTCAGGAACAGCATCAA 23849 29 100.0 32 ............................. TCGGGAAAGGGTTTTGTTCTCGGTGCCGATGG 23910 29 100.0 32 ............................. CCGTATATCTTTAAATTTGAGAACAAAACAGG 23971 29 100.0 32 ............................. CGCACAACCAGCGGCCTTAACATGACGACGCC 24032 29 100.0 32 ............................. GATTTTGTGACCTTTTTCTTGCCTGCGGCCTT 24093 29 100.0 33 ............................. GCAGGGGTGGATGATGGCGTTGCAGTCCTCCTC 24155 29 100.0 32 ............................. CCTACACGGTTACGCACGATCTCCAGCTGGCC 24216 29 100.0 32 ............................. CTGGCTACGCCGGTGCGGTTGCCGCCGGTTCA 24277 29 100.0 32 ............................. TTGATAAGATCGCTGTTGATATCGCACAGCAG 24338 29 82.8 0 ............T.........GG...AA | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGCCGCGTTCAGCCCGGTAGACGTGGCCGGCGAAGACCGACAATGGGTGGCGCTGGCGCCGCTGGCGGTAGACGAAAGCCTGCGCCGCCAGGGGCTGGCTGAAAAGCTGGTTTACGAAGGCTTGGATTCGCTGAACGAATTCAGCTACGCCGCGGTGGTGGTGCTGGGCGATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGATACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATTGCTTTTAACTTGTTGATAATTAATTTTAATTTGGTGGAAAAGGATTTCACCGAAGTGTATTTTAAAATTTGATTATAAATCAAATGGTTGTGTTTTTTCAGAAGGCGAAAATATTTGGTAGGATTTAAGGTCTTTAAAAATACATTTTAATTCAACCATATACTCTAAGA # Right flank : ATTGAACGCTCGCAATCACATAGGCAGCTTTGAAATGCAGGGGGAGGAAAAAACCACGTAATGAAATCTGTTAACCAGGAAGCAAATACGCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCTAGCGTCAGCTCCCCTTTACCGCGCAGCGCCTTGGCGCCTTTGCCGGCTTGATGTTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATATAGAGGTGCCAGTGGGGCAAGTCCATCATTGGGGTCCTGTGCAAGGGTAGAAACGACATCAGGCCGCCATAGCCAAGCGCGGTATCTCTATTTTGTCACGATTTAACGATGGATTTCACCACTGGCGGAACGGTTTGTTTATTCTGTCTTGACGATAAAGGGTTATTTTAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //