Array 1 3139781-3137494 **** Predicted by CRISPRDetect 2.4 *** >NC_017910.1 Shimwellia blattae DSM 4481 = NBRC 105725, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3139780 29 100.0 32 ............................. TAAATTACGGATTTCTTTACATACAGAGATAC 3139719 29 100.0 32 ............................. ATGCTCTTTGATTTCCGGCATCTGGATCGCAA 3139658 29 96.6 32 ............................A TTTCCACATCACGACTAAATTTTTCTCTTTCC 3139597 29 100.0 32 ............................. GAATTGGTTTCCTGATACAGGATTCTCCATTT 3139536 29 100.0 32 ............................. TTTTCTATGGTTGCTTTCATCTCATTGATTTT 3139475 29 100.0 32 ............................. TTCACGCACCAATTTAATTTCAGCCTCAGAAC 3139414 29 100.0 32 ............................. CAACTGTGATATTATGTTTTCATTCCTAGCTT 3139353 29 100.0 32 ............................. GGGCTTTCGCCCCAATTGTTATTCTTCTTCTA 3139292 29 100.0 32 ............................. GTGATCACCATGGTCGGCGATGCGGTGCCGTC 3139231 29 100.0 32 ............................. CCTGTTTCAGTATGGTTTTATCACCATCATTT 3139170 29 100.0 32 ............................. AAATTTGCTAAGACTGTAAAACTGGTTAGCAA 3139109 29 100.0 32 ............................. AAAACACAATTGCAGTGACCAGTGCTGCTAAT 3139048 29 100.0 32 ............................. GTCCTTAACCGATTTAACGCGGCTGGGCAGGC 3138987 29 100.0 32 ............................. CGCTTCCAGATTGTTTTTCATATCAGGGAATT 3138926 29 100.0 33 ............................. CGCGTGGAGTCCAAGCATGACAACTGATATCAC 3138864 29 100.0 32 ............................. CAACGGCGGAGAACCACGCATAAATCCGGTGC 3138803 29 100.0 32 ............................. ATAGACAAGGCGATGATAAATATGATCGCCAG 3138742 29 100.0 32 ............................. TGATTGGGATATATCCTAATTCAGCAATTCTT 3138681 29 100.0 32 ............................. ATCGTTTAACTTCTCTTGCGGTGTCGTTTCCA 3138620 29 100.0 32 ............................. AGAATGAATCTCTGTTTATTGAGCGAGCAACC 3138559 29 100.0 32 ............................. TGGCAACGTTAATAGAACCTAATTTATCCAGG 3138498 29 93.1 32 ............T...............C TATGATATTAAGAAATTGGCCCTGGAATGTGC 3138437 29 100.0 32 ............................. CGTGGTTATTAAATTCACCGGCTGTGTTTGTT 3138376 29 100.0 32 ............................. GAAACAAAATGGCTTATCAAACAGGTAAAAAA 3138315 29 100.0 32 ............................. ATTATTGATATCGTTAACGCGGGCACGCTGTT 3138254 29 100.0 32 ............................. GTCACCATCAGCAGTAGAAAACATAATGGTGT 3138193 29 100.0 32 ............................. GTTCAGCAGTGCGAAGAATTTACGGTGAAATG 3138132 29 100.0 32 ............................. GTGGCGGCTTCTTTTGCCGTGATCGGTTCTTC 3138071 29 96.6 32 ............................C GATCACCCAAACCCATGGGTTAGCCTGCCAGC 3138010 29 100.0 32 ............................. TTAAACGAATATGTCCCCTCGTCATTCACCAG 3137949 29 100.0 32 ............................. TGCAACAACAGCACTAATAACCGCTACAGGAT 3137888 29 100.0 32 ............................. AAATAAAAAACATGAAGAGATTCTCTGCATAT 3137827 29 100.0 32 ............................. GTTTACCGCTATTCGTTTGATGTTGACTGGAT 3137766 29 100.0 32 ............................. CAGATGGTCCCGCCTATCGTTGTGGCCGTGGC 3137705 29 100.0 32 ............................. CTGAATGGCACAGTCGCGCCAGTAAACTGTTT 3137644 29 100.0 32 ............................. CAGCGCTTACAGGTTCATTCCCCGCGAGCATT 3137583 29 100.0 32 ............................. TGGCATATGGACACGGATGATCAGGTTTATAT 3137522 29 75.9 0 A........A.C..C.T........C..C | ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATCGAGGAGATTCTGGCTGCCGGGGAGATCCAGCCACCACCGCCGCCGGAAGATGCCCAGCCGGTGGCTATCCCATTACCGGTTTCCCTGGGGGATGCCGGGCACCGGAGTCACTAACGATGAGTATGCTGGTTGTGGTTACGGAAAATGTTCCGCCGCGTTTGCGCGGGCGGCTTGCTGTCTGGTTACTGGAGGTCCGGGCGGGTGTCTATGTGGGGGATGTGTCGGCACGTATCCGGGCAATGATATGGGAGCAGATCTCGGTACTGGCGGAGGGCGGAAGTGTGGTGATGGCCTGGGCGACAAATACCGAATCCGGGTTTGAGTTTCAGACTTACGGTGAGAACCGCCGTATTCCGGTAGATCTTGATGGTCTGCGACTGGTCTCTTTTCTGCCTGTTATAAATCAGTAAGTTAACGTTCTTTAATAATCTGGAGAATTTGGTAGAATCAGAAACGTTAAAAAAATGCAGTAAATTCAGTTGTCTATATTTAGA # Right flank : ATGTGCCTGGCCCTCCTGCAGCTGTTGCTGTCAGAAATATCCCCGTTAAATGTAATTGTATTGTTAAGTAAATGCCGAATTGATCACAATAATTAAACAATTTGCCCGTTTTATACGCATTATCCAAAAATGTAGATATTTTTAATTTATGGCTACGAAATGAACATCGCCTTGTCTCCCTGATTATCAACAGAGGATAGATCCTGATGAACGCACTGACTGCCGTAAAACCCGCTGTCCAGAGAACCACCGGATTTACCATTGCCCCGAGCGTGCAATCGCCCCGTCTGCTGGAGCTGACCTTTAGCGCTGAAACTGCCCGGCAGTTTCTGGAGCAGGTGGCACAGTGGCCAGTGCAGGCGCTGGAGTACAAATCTTTCCTGCGTTTCAAAGTGGCCCGCGTGCTCGACGATCTGTGCGCGGGGCAGCTTCAGCCGCTGCTGATTCACACCCTGCTAAACCGCGATGAAGGGGCGCTGCTGATTGGTGCTGAGGGCATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //