Array 1 109262-109961 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAIHIF010000007.1 Escherichia coli strain S294 contig00007, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
    109262	    29	 100.0	    32	.............................	GTCAGGGTTACCGGGTTTCTGACATTGCTGAT	
    109323	    29	 100.0	    32	.............................	CCAGGGTACTCCAGGTCACTGAAGATACGCCC	
    109384	    29	 100.0	    32	.............................	AACAGCGCCTGCTCCTGCTGCTTGAATGGCAC	
    109445	    29	  96.6	    32	............................A	CGTTTCTGAGCGCGTGCCGCTTTCTTCGTAGC	
    109506	    29	 100.0	    32	.............................	GGCTGGACGCTTGGTTCAATCGACCTAACGTG	
    109567	    29	  96.6	    32	............T................	CCGCCGCAACAATCGCGCCCGCAGTGCTGCCC	
    109628	    29	  96.6	    32	.T...........................	ATTGTTCAGAATCGTCAGCGTCAGGCAGATAA	
    109689	    29	  96.6	    32	.T...........................	CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA	
    109750	    29	  96.6	    32	.T...........................	TTCAGTGAGCCATAAAACCGCAGCTTATTTGC	
    109811	    29	  93.1	    32	.T.......A...................	TTCAGGGTGTGATTCCGCATACCAAGCAGTAA	
    109872	    29	 100.0	    32	.............................	GGCGCACTGGATGCGATGATGGATATCACTGA	
    109933	    28	  75.9	     0	..A........C..T....A..-.C...C	|                               	T [109952]
==========	======	======	======	=============================	================================	==================
        12	    29	  96.0	    32	GAGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGGAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGTAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTGTCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA
# Right flank :  CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT

# Questionable array : NO	 Score: 5.75
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   GTGTTCCCCGCGCCAGCGGGGATAAACCG

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [6,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-10] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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