Array 1 48398-49277 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NSGT01000092.1 Xanthomonas sp. LMG 12459 LMG12459_contig_92, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	===============================	====================================	==================
     48398	    31	  96.8	    35	.....A.........................	TACTTCAAGAAGGGCGAGAACACCGCAGCTGTGCG 	
     48464	    31	  96.8	    30	.....A.........................	AGCAGCATCACCGAATCAACCGTGTGGGGC      	
     48525	    31	  96.8	    34	.....A.........................	TGCAGCCCCCGGCCAATTTCCAGCTTCAACCAGT  	
     48590	    31	  96.8	    33	.....A.........................	GGGTTCGCGAGGTCGCCTGCCATCTGCTGGTAG   	
     48654	    31	  96.8	    35	.....A.........................	CTCAGAATGTCCTGTCCGGCGGAGGTGCCGAGCGG 	
     48720	    31	 100.0	    36	...............................	TGGTTCGCCCGGACGATCAGCAGCTTGCGTTCGGTG	
     48787	    31	 100.0	    35	...............................	CAGTTGAAATGCCACTCCATGAAGGTGGACGCCTG 	
     48853	    31	 100.0	    36	...............................	AAACCGGAGGGCTGACATGTCGGAGAAGAAGCCCGG	
     48920	    31	 100.0	    36	...............................	GCTTCCGGTGGCACGCCGCCTAAGACGCGCTTCATG	
     48987	    31	 100.0	    36	...............................	ACGTTCGCGATCCACTGACCAAGCAGCGCAGTGGTT	
     49054	    31	 100.0	    34	...............................	TGCGGCGTGGCGCAGATGTAGAGCTTCGAACCGC  	
     49119	    31	  96.8	    34	................T..............	CTGGCTTGCAAGATCGACGCGCTGGTCGGTTCCG  	
     49184	    31	  93.5	    33	..........T..A.................	CCCTTGCCGGCAGGGACTCGCTCACGCATGCCT   	
     49248	    30	  74.2	     0	...C....A..CAA.....C...-G......	|                                   	
==========	======	======	======	===============================	====================================	==================
        14	    31	  96.3	    34	GTCGCGCCCTCACGGGCGCGTGGATTGAAAC	                                    	       

# Left flank :   GCGAGGATTGCGCCGAGTTGCACACCGCGGCACCGGCGGTCCTGCACCGCCGCGCGCCGGCGTTGGTGGCGGCGTTCGCGCAACGCGGCTGGGCACTGCCGGAACGGATCGATCGCGTCTATTCGCCGCAACGGGCGCTGGACGCGCTGGGCTGGCAACCGCGTCATGGTTTCGCGGAAGTGCTGCACCAATACGACACGCACGTGCCCGAGGTGCTGCCGCCCAACGACGGACGCGCCGTCAGCGACTGAGCGCCCGGCGCTGATCGGCACACCGGGTTCGGATGGCGACGCAAGGACGTGCGCCGTCGGCGCGAACCGGAAGCGCCCGGGGTTTTCCCGGCCGGTTCGCGAATCCCGATAAGCACTTGATCGAAAAAGTGAAATGCCTTGGCACCATGAAACCGGGCAAGGCAGCCCCGCCCCCTGCACGTCGCCGCACGCCTGTTTCGCGAAATCGGCACTTTTTCCTTAGTCCCGGCCGGCAGTTATGCTGAGGGC
# Right flank :  CCGTGCCAGGCCCTTGGTTGCGCGGAGGCGCGATTCACGACATCACCGCACCATGGACCTCAGCGCAGCAGCACCGAAATGCCGAGGCCGCCCTGCCAATCCGGGGTCTGCGACGACAGGCCGCGCAGCACCGACAGATCCAGTTGCACGCGGTTGGCGAACAGCCAGGTGACGCCGCTGCCGAGCGCGCGCATCTCGTCCTCGCCGCCGCCGATGCCGGCCTCGACGTAGGCGCTCAGCGTGTCGCCGGCGTAGAAGGTGTAGCTCGGCGAGACGCTCCAGCCGGAGCCGTCCTCGCTGTCGCTGACATTGCCGTACAGCGCCAGGCTACGCCCCTCCGGCAGGTCCCAGCCGGCGCTCACGCCCAGGTCGTAGCGGTGGCCGGCATCGCCGTACGGCGCGCGCCCGACCGGCAGGCTGGCGCTGCCGAGCAAGGCCCAGCTGACGCGGTCGCTGGCGCTGGGCAATGCCTGCTTCAAGCCGATGCTGGCGTCGCCGCC

# Questionable array : NO	 Score: 8.76
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCGCCCTCACGGGCGCGTGGATTGAAAC
# Alternate repeat :   GTCGCACCCTCACGGGCGCGTGGATTGAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [5,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.20,-7.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-11] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [9.41,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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