Array 1 359-787 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNGL01000043.1 Clostridium cochlearium strain NLAE-zl-C224, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 359 31 100.0 34 ............................... AATTTCCTATATCATCTATAAAATTTTCTATATT 424 31 100.0 35 ............................... AAGGAAAGAACATATGTAAGAATTGTTTAAAGGAG 490 31 100.0 34 ............................... TTATTCATAGGAGATCCTGCACAAATACCAAGTG 555 31 100.0 35 ............................... TGTAAATACTTGTAGCTGTCGGTTGGTCGATGTGA 621 31 100.0 36 ............................... ATTTTCAAAGATCGTAGTTGGTTAAGATTCAAAAAC 688 31 100.0 38 ............................... GATATAACTTGGATATGCAAGAACAGGCGAAAAGACAA 757 31 96.8 0 A.............................. | ========== ====== ====== ====== =============================== ====================================== ================== 7 31 99.5 36 TGTTTTTAGAATAACTATGAGGGATTGAAAC # Left flank : AGATGATGTTCTAGAAGCATTTGAAATAGAGAGGTCTCTAAGTAATAAAGGTAATCCCTATGACAATGCAGTAAGTGAGGCAGTAAATAAAATAATGAAAACTGAATTTATATATCAGAACAAATTTGAGACATTAGAGGAGTTGCAGTTAAAATTAGCAGAGTATATTTATTGGTATAATAATATAAGAATTCATGGTTCTTTAGGTTATCTAACGCCAGTGGAATATAGAGGGTTAAACACTTTGAAATCAGCTGGATAAGAACTGTAGTTAAAGTAATTTCTTGTTCGGAGTAATTTTGTCCAAAAAAGGGTTGCCAATCCAATTATTTTCATATTGATTTAATAAAACTACTAGT # Right flank : CCATAATAAAAAACACCTTACTCCATACTATAGATTAAAAAATTACATATAGAGTAAGGTGTTTTTTAATAGAAAAATAAATGAACCGTCCCCTAGATTTTACTCTTGAAATACTCCCCAGGAGTTTAAGTTATTAGTACATCCTATCCAAATAGGACAGTTCATGGGAATGAAATCAAATAACTCCTCAACATTATTATTAAACATACGTATACAACCTAGGGATGAATCGGTTCCAATGGACCAAGGACTATTATTTCCATGAATTCCATACATAGAACCACCATCTATTGACAGTCCAAGCCATCTTTTCCCTAGAGGATTTTCAGGCGTTCCACCAGGTACAACTTGTCCTGTTCTTGGGCTGATCCAAGTAGGATTTATAAGTTTAGATACAATTGTAAATTTACCTTCAGGAGTATAAGAAGGTGAAGCACCTGCAGCTATGGGATATTTCTTGTGTACTTTACCATATAAATATACTGTTAAAATTCTAGTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTTTAGAATAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 2416-3570 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNGL01000031.1 Clostridium cochlearium strain NLAE-zl-C224, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2416 29 96.6 36 ................G............ AAATTAGGCGACTGCTATGTATGGATTACTAGGGAG 2481 29 96.6 37 ................G............ CCTCTAAAATGATACAGCAAGGATTTGAAAGGTTTGG 2547 29 96.6 38 ................G............ CTGCTTGGACATTGGACAAACCCTGTTCAAAGTCCATG 2614 29 96.6 37 ................G............ ACCACTCTGGCTCCTTTCCAAGTACATTTTCTTCGAG 2680 29 96.6 38 ................G............ TAGGTCTATCTGTTTCGCTCCATAATCCACTAGCCATG 2747 29 96.6 36 ................G............ TCAGATTTACAACTTATGAAGGAGTATGTGGCAATT 2812 29 100.0 37 ............................. AAGATAATTCAATAGCTCAAGAAATAGCCAATTTTGT 2878 29 100.0 38 ............................. TCTTCATGTATATCACCTATAACTTCTACGTCTAACTT 2945 29 100.0 38 ............................. ACAGGTAGTAAAATACTCAAAGATAAAAAGGATGCAAT 3012 29 100.0 37 ............................. TAGATAGTTTCTTTAAGTAAAAGGAGGAGTAAATTAT 3078 29 100.0 38 ............................. TTGGTTCTTATGCAGGTAATAATGAAAATCAATTAAAT 3145 29 100.0 39 ............................. TAAATTCCTGCGGATGCTCACAATGTTTTTTAAATTCTT 3213 29 100.0 36 ............................. ATATAAATACTTTAAAAACTATATGTCAGAAAGGTT 3278 29 100.0 37 ............................. ATATATAAATCAAATTAAAAAGTACCGGCCTTAAGCT 3344 29 100.0 35 ............................. ATTAGCCATGAACATAAAGACCATACCAAGGCTGC 3408 29 100.0 36 ............................. CAAGTTAAAATAAAAGTTGTGATTAACTTTATATCT 3473 29 100.0 39 ............................. TTTGTAATATAATCGATAGATACACCATAGAAACTAGAG 3541 28 79.3 0 ......-C............TT..T...T | AT [3559] ========== ====== ====== ====== ============================= ======================================= ================== 18 29 97.7 37 TTTTTAGAATAACTATAAGGGATTGAAAC # Left flank : ACGCATATGTTTGCTATATTAGTTTACGATTTTGGTGAAAAAAGAGTGGGCAGAGCTTTAAAAACTTGTAGAAAATATTTAACTTGGGTTCAAAATTCTGTGTTTGAAGGTGAAATAAGTGATGCTAATTTAAAAAAGTTAGAAATGGAATTAGATAGAATTATGCATAGTGATGAAGATTCGGTAATTATATATAAATTTAGAAGTACTAGATATACTACAAGAGAGGTTATAGGTCTTTCAAAAAATGAACAAGATATATTTTTATAGAAAAATTTAGGAATCATCGTTACTTGTCTTAATAATAGTTATTCAATAAGAATTATTTACAAAGTCGTCGACCCCCAATCCTGTAAAAAACCCGGGAGGTCGACGACAATTTTTAATTGCTTCATAAGTATTGATGTTATTGATGTAAAGCAATATTTGTATATTTTTGTTTACACTTTGTTAATAATGGATAGTTTTAACAAAGTGTGTTATAATGCAGATGTAATTGG # Right flank : TATAGATAAACCTTTTATTTTGAATTTTAATAAAAGGGTCTATTAGTATGTCTACAATAATTAATCTAGACAAGCTATAATAATAACAAGAAATATTATATATAATTATTTGTAGAAGCATGTATTTTAAGAAAAGAACTATTTATGAATTATAGATCTACCAATGATGAGTTGGTTTATTATAAAAATAGAATTTTGAATTTTATCATAAATAATTCTGGAGAATATGCTGCCAATGAAATAAGCGCAATATTTGGATTTAGTAAAAGAAGAATTCAATATTTTGTAAAAGAATTTAACAATAAAAAAGGATATTTAATTAAATCTGTAAAAGGTAAATATTATATAAAATCTTATCCTAAAAACTTTACAATAATAAAAAAAGATGTAGATAGAGAAGCAATAAAAAAATGTATAATTTATGGTAGCATAAAAATAGAACGTGGTAAAAATAATTGTGTAATTTATACTAGATTTGTAAACAACTTTATAAACAAGGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTTAGAATAACTATAAGGGATTGAAAC # Alternate repeat : TTTTTAGAATAACTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 16281-16446 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNGL01000031.1 Clostridium cochlearium strain NLAE-zl-C224, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 16281 30 100.0 38 .............................. CAATTTTCACTTGATAACCATTATCATTTACTAACTGA 16349 30 100.0 38 .............................. ATAATTCCTCTGATATATGGCTTGTAAAAGCCTTTACT 16417 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 100.0 43 GTTTTTAGAATAACTATGAGGGATTGAAAC # Left flank : GGAGGAAGAAGCCAATAAGAAAAATAATAAGAAAAATGAGGTAAAAAATAATAAGATTAAGAGGAAAAGAGATACTTTTGAAGATTCTCCTTTTGCAAAGTTAAAGGAGCTTAAATTTTAAATAATAGGAATAGTTAATGTATCAAAGGTATACCTATAGAACCGGTAGTTGATAAATTAAAATTAGTTTCTTAAAAATATATATAAAATTTTATAGGATAACTATGTTTATTTGTATTGTAAGTTTTTGTTTATAAACATTTTATATCTAAATTTGGTAAAACAGCTTCTTAAATTAAAGAAGTTAAGTTATTAACTAATAAAAGTTCACAAAGTCGTCGACCCCCAATCCTGTAAAAAACCCGGGAGGTCGACGACAATTTTTAATTGTCGTATAAGTATTGGTATTATTGAGTTGAAGCAATATTTATATATTTTTGTTTACACTTTGTTAACAATGGATAGTTTTAACAAAGTGTGTTATAATGCAGATGTAATTG # Right flank : AG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAATAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA //