Array 1 172483-176090 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHJV010000001.1 Streptomyces hygroscopicus subsp. hygroscopicus strain 5-4 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 172483 29 96.6 32 ............................G CGGCGGGCACTCGGTGACCAGGGTCAGTCCGG 172544 29 96.6 32 ............................T CCGGGTGCTGAGCGCCGGTACGTCCGCCTACG 172605 29 96.6 32 ............................G CCAGAGCCGAAGACCGCCCTGCCCACTGATGA 172666 29 100.0 32 ............................. CCGCTGTCATTGGGGCGGCGGCTGAACCCGCC 172727 29 100.0 32 ............................. ACCAGCGTGACCCGGAACACGGCGCGCATCAC 172788 29 96.6 32 ............................G CCGAACGACCTTCGGTACGCGTTCGTCTTCGA 172849 29 96.6 32 ............................G CTGGAGGCGCTGAGCAACAAGCGCATCGGGAT 172910 29 96.6 32 ............................G CCGTGGCGTCGACGACGACCCAGTTACCCGCG 172971 29 100.0 32 ............................. CGTGCCGGTCGAGAGCCCCGTCTTGGCCGCGA 173032 29 100.0 32 ............................. AGCCAGGAGGTCATCGCGCGCCTCCTGCGGTG 173093 29 100.0 32 ............................. TTGCGCTTGGTGGTGCCGTCAGGCTGCGGCAC 173154 29 96.6 32 ............................G TCCGTGCCGTGCCCCTCCCCGCCGCATGAGCA 173215 29 100.0 32 ............................. CCGGGTGAGGCCGAGCGCGCGATCTTCGGCGA 173276 29 96.6 32 ............................T CCGCGGGGCGCCCCCGGGCGCCCCGCCCTCGG 173337 29 96.6 32 ............................G CTTCTGGAGTGCGGCCGTGAGCCGACGCGCCA 173398 29 96.6 32 ............................G CGACGAGACCATCAGCGACGCCATCCGGCGCC 173459 29 96.6 32 ............................T CGCCAGCCCCAGCCGCCCCAGGCTCGACTTGC 173520 29 96.6 32 ............................T ATGGCGTTGCTCTGGATCTGCTGCGCGGCGGC 173581 29 96.6 32 ............................G AGCCGGCTGACGGTTTGCAGGTCCGGGGGTAG 173642 29 100.0 32 ............................. CGTCCGAGAGTGACTACGAGAAGTGGTACATC 173703 29 100.0 32 ............................. CGTGATGTCTGCTCACGAGTACGCCATCGCCA 173764 29 100.0 32 ............................. CGTCCGAGAGTGACTACGAGAAGTGGTACATC 173825 29 100.0 32 ............................. CGTGATGTCTGCTCACGAGTACGCCATCGCCA 173886 29 96.6 32 ............................G TGCTACGCCGGATGCGGAGTCGAGGAGGTGCT 173947 29 100.0 32 ............................. TCGGGTGCCGAGCACAGGAGTTCGGTGGAGAG 174008 29 96.6 32 ............................T GCACCTCTTCCCGGCCAACGGCCCGCAGCGTG 174069 29 100.0 32 ............................. CGGTCAGCGGCGAGGCGACGCTGACGACGAGC 174130 29 96.6 32 ............................G ACCTGACGGGATCTGGTGATCCTTCGCCGCTC 174191 29 100.0 32 ............................. CCGTCCTGCGTCATGCCGACACCTCCCCGGCG 174252 29 96.6 32 ............................G GCTGGCGCGCAGGTGTTCGTCGGGGTCAGGGC 174313 29 100.0 32 ............................. TGCGGCCCCACGCCCCTTTGCCCGGCCCGTCC 174374 29 96.6 32 ............................G TACGCGTAGCCATCAGACATCGACTCGTAGAT 174435 29 96.6 32 ............................G GTGTTGTCCGACCGGCTCAAGCGGCTCCAGCC 174496 29 96.6 32 ............................T CGGCGTCGTAGGCGGAAGCGCCGGGGATGGAG 174557 29 100.0 32 ............................. GCCAGCCACCCCGCCACCGGTGCCCGGCTGCT 174618 29 100.0 32 ............................. CGGAGGAGCGGACACCCCGCCTCCTGCCGGTC 174679 29 96.6 32 ......................G...... CTTTCCGAGGAGGACTCATGACCGCACCGCAG 174740 29 96.6 32 ............................T GAGGCGATCCGGCGGTTTATGGCCGAGAGGGC 174801 29 96.6 32 ............................G TCCAGCCAGGCGAGGGCCGCCCCATGCTGTGC 174862 29 93.1 32 ......................G.....G TGGGGCCACATGGCGGGGTCGAGATGCGGCGG 174923 29 86.2 32 ..............C.......G..G..G TCCAGCCCGGCGAGGGCCGCCCCCTGCTGTGC 174984 29 82.8 13 ...............T..CC.....CC.. GCGCCATCGCCCG C,C [175002,175008] Deletion [175026] 175028 29 96.6 32 ............................G ATGTGGCAGCGCATCCAGGCCGATGCTGGGGT 175089 29 96.6 32 ............................G TGGGGCCACATGGCGGGGTCGAGATGCGGCGG 175150 29 100.0 32 ............................. AGGCCCTGAACGCGACCGGCTGACCCCGGCCA 175211 29 96.6 32 ............................G CAGGCTGCCGGTGTTGGTGATACGGACGTCGG 175272 29 100.0 32 ............................. GCGCGCCGCACGGTCCCGGACGCCATCGCCCG 175333 29 100.0 32 ............................. CGCCGTGGGCTTCGGCCTCGGCCAGGACGCGC 175394 29 100.0 32 ............................. GGACGGCGCCCGGGGGCCCGTCGCGTCCGGGG 175455 29 100.0 32 ............................. CGCCGTGGGCTTCGGCCTCGGCCAGGACGCGC 175516 29 100.0 32 ............................. CGCCGTGGGCTTCGGCCTCGGCCAGGACGCGC 175577 29 100.0 32 ............................. GGACGGCGCCCGGGGGCCCGTCGCGTCCGGGG 175638 29 100.0 32 ............................. CGTGGAGGACGCCCAGGAGGCGGACACTGGGG 175699 29 96.6 31 ........T.................... CGTCTCCTTCGTGGTTGGTGGTGGAGTGTCG 175760 29 100.0 32 ............................. TCGGCCCCATCGCTGACTCGGTGGTACGACGG 175821 29 96.6 32 ............................G GCAGAGCCGTCTGCCTCCTCGAATGGGGATCC 175882 29 96.6 32 ............................T GGGCCCACGGGCCGACGACATTGCCAACACGT 175943 29 96.6 29 .....T....................... GCGGAGGAGACCATGCGCGGGTCATCACC 176001 29 89.7 32 C...T.G...................... AGCTCCGGGGTCACCCCGCTCAAGCGCACCTC 176062 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 60 29 97.4 32 GTCGGCCCCGCGCCAGCGGGGGTGGTTCC # Left flank : CGCCGGTGCGCCAGCCAGGTACGACGCCAGAACCTCGAGAATGACGTCCCGGTGCTCCTCGACCAGCACATACAACTTCCCCGGCAAGCAGTCCCACATCGCCTACCGGCTGCACCACGGCATCCGCCAACGCCCGACCGCTACACCCATTGCCCACGCCGATCGACGATCGCGACACGTTAACCCGCCGCGACATACGCCGCCACGACCACCGCGGCAGCCTCCTTCGCGAATCCCAACGTGCAGTACACCTGCACGGATGAGGTATTCGGCAGGGACAGAGCCACCGATTGCCGGCATGGGAGCGACCTGGTCACCCCGCTGCTCCGGCCTCCCCCGCAATGCACTTCGCGCTAGACCTCACCTCTGAGATCATCTCCAACATGACCACGAGCCCTCATCCTCACCACCACGCTAGACGGCCCACTGGCGCTGCTCACGCCAACCTCCAACTGAAGGAAAACGGCATTGACCGGGAATAGAGTCCCGGGTCAGCAAGT # Right flank : GCTCGCCGAGCTGGCGCGCGTCCTGCGGGTGCCGTCGGCCCCGGCCGGGCGGTGACCTGCTCGGCGGATCGTGCGGCCGGTGAAGACGGTGTGGGCCGGGATCTGTGTGACCTCCGCGTCCGAGATCAGCTCGCCGGTGTCAGGATCGATGACCACCCTCGGGTAGCGGACCGGTGTCCAGGCGCCCTCGGGTATAGCAGCGCTTGCGCGCTTGATGGAGGGGTTCATCCCCGTCGTGATCGAGAAGTGAGCATCGGCCCGGTGGCAGGCGGCCACCACGTCGGCGTTGCAGAACTGGCTGTCCGCGCGCAGGATGCGGGTGCCGGTGCAGCCGGCCTCGCCGGCGGTGGCCAGGGCTTCGGTGACGAACCGTTCGAACCCCGCGGGAGTCGGCTGACGTGCCCTGCCACAGCCGCACGGCGGCGATCACTGGCCGGGCGGTCGGGGTGCAGATCGTGGCCAGCAGCGGGTGCAACGTGCGGATCCCCTTGAACCGGCCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.57, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCAGCGGGGGTGGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180183-183628 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHJV010000001.1 Streptomyces hygroscopicus subsp. hygroscopicus strain 5-4 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================== ================== 180183 29 96.6 32 ............................C ACGATGCGGCTGTTCCCCGGGTTGTTCACTGA 180244 29 96.6 32 ............................C CGCAGGAGCGGCCACGAGGTGCGGATCGTCGC 180305 29 100.0 32 ............................. GTGCTCCGCGCCGAGCCACCCTCCACATCGCA 180366 29 100.0 32 ............................. ACCAAGACGCTGACGACCGGCCCTCAGACCAT 180427 29 100.0 32 ............................. TTGGACGCGGTCGTACCGGGTCGGCGATAGGC 180488 29 100.0 32 ............................. GCACCTTGCCGTCGCGCTCGGGGACCAGGTGG 180549 29 96.6 32 ............................C GTCATGGCGAGCACGTACAGCGCGTACATGCG 180610 29 96.6 32 ............................C CCGGTCGCGGGTGAGGTCGCCGGATGCGATCA 180671 29 96.6 32 ............................C GCATACAGCCTGTGTCCCTCGGCCTCGTCGAG 180732 29 96.6 32 ............................C CTTCTTCGGAGGCACGTCCCTGGCGATGGTGA 180793 29 100.0 32 ............................. GCGCAGTCGGTGGCGCTGCGGACGCTGCTGCT 180854 29 96.6 32 ............................C GCAGATGTTCCAGACCTCCTCGCGGTCCGCCA 180915 29 100.0 32 ............................. CATTCCATCGCCAACCGGATTCCTTATCCCAC 180976 29 100.0 32 ............................. ACCAACGAGCGGCTGAATGAGGCGTTGCAGGA 181037 29 100.0 32 ............................. TGGGCCCAGCGCACCGAGCCCGTCGACGGCGG 181098 29 96.6 32 ............................C CGACGCCGCAAGAACGCCTGATCCAAACCCGG 181159 29 96.6 32 ............................T CGTCCCCACCGAGGCACGCCGCATCCTGGATC 181220 29 100.0 32 ............................. AGTCCTGACCGCGTCAGCACAGCGCCCCCTCC 181281 29 100.0 32 ............................. ATGCTCGGCCAGGGCGGCCCCCAGGCCACCAA 181342 29 96.6 32 ............................C CCGGAGGGGTTCCGGTCGGAGGCGGAGGGCGG 181403 29 96.6 32 ............................C CTGTGGATGCGGTCGGCGAGCTCGCGCCGCTT 181464 29 96.6 32 ............................T ACGGCTTAGGTGGTGCCCAGGCCCCCTTTGGC 181525 29 96.6 32 ............................C CCGGACGCGCGGCCGGTGGGCTTGACCTTGAC 181586 29 96.6 32 ............................T GCAGGTGCCCCAACCCGGTGCCCCCCGAGACC 181647 29 96.6 32 ............................C TTCCAGGGCGCCCTGATCATGGGCATCGTCGA 181708 29 100.0 32 ............................. ACCGGCCACTGGTGGATTTCGCCTCCGCCCTG 181769 29 100.0 32 ............................. ACACCGCACACCACGTGTAGGGGCCCGACTGC 181830 29 100.0 90 ............................. CGCCGCCAGTCGTGGGGCACGTCCCCGCCCGGGTCGGCCCGCCAGCGGGGGTGGTTCGGCCGGTCTGGAGATCATGGAGGACGAGGCCGG 181949 29 96.6 32 ............................T TCGCCTACGAGTACGGCCGGCATCCCGAGACC 182010 29 100.0 32 ............................. ACCATCCAGATGGTGCCCGCCGAGGTCGCGGA 182071 29 96.6 32 ............................T GGTGGTCAGCGGCGAAATCGGCGAGAGCGGAG 182132 29 93.1 32 ....................A.......C CGGGCCAGCCAGTACGGCCCCTTCTGCGCCCG 182193 29 100.0 32 ............................. ACCATCCAGATGGTGCCCGCCGAGGTCGCGGA 182254 29 96.6 32 ............................T GGTGGTCAGCGGCGAAATCGGCGAGAGCGGAG 182315 29 93.1 32 ....................A.......C CGGGCCAGCCAGTACGGCCCCTTCTGCGCCCG 182376 29 100.0 32 ............................. AGGGAGGCCGCGGCGGTCGGGCTCTTCGGTAC 182437 29 96.6 32 ............................C TGCGAGTCGTCGAACTACCGCTGGATCACGCC 182498 29 100.0 32 ............................. GTGTCGCGGCTGGAGACCGGCCGCCTGCACCG 182559 29 100.0 32 ............................. AGGGGAGCCGACGTGCTGAATGGTGCCATTCG 182620 29 96.6 32 ............................C TGTTCAGCAGGCCATTTTCGGCCCTGCTCGAC 182681 29 93.1 32 ......T.....................T TGATCACCGCGCTGTACGAGGAGGACGGCACG 182742 29 100.0 32 ............................. GAGATCGGCGTCCGCCCTGCCTGGCGCGGTAC 182803 29 96.6 34 ....................C........ GCGTTCGGCAACCCCACCCCCGACCCCACGCGGT 182866 28 96.6 35 ........-.................... CCGNAGATCGGCGTCCGCCCTGCCTGGCGCGGTAC 182929 29 96.6 34 ....................C........ GCGTTCGGCAACCCCACCCCCGACCCCACGCGGT 182992 28 96.6 32 ........-.................... CCGTAGAGCCCGCAGGTAGGCCCCCACGACCA 183052 29 96.6 32 ............................C GGACAGATCGATCAGCAGGTCCGGCAGCTCGC 183113 29 96.6 32 ....A........................ TTCACCACGACCGGCGGGGACATGAGGTGGCG 183174 29 96.6 32 .....................A....... GTGGGCGGCGCAGCGGACCGCATGGGTGACTC 183235 27 86.2 32 ..............G......--.....T ACGGGGTCCATACCGGAATTGGCCGCCACAGT 183294 29 93.1 32 ..............G......A....... CCGAGGCGTAGGGCTCTGCCGGACCGGCTTAT 183355 29 96.6 32 ............................C CACAGGCCCCGCGCTTCGAGCTCGCGGATCTC 183416 29 93.1 32 ....................A.......C ACCTGTCCTTCCTGCTCGGCGATCGTCACCGC 183477 29 96.6 32 ............................T GTCGGCCTGCTGCGTGGTAGTGGGCGGCTTGT 183538 29 96.6 32 .................C........... CCGACGCGGCCACCGTCACCCGCTGGTCCAAG 183599 29 93.1 0 .........................G..C | G [183622] ========== ====== ====== ====== ============================= ========================================================================================== ================== 56 29 97.2 33 GTCGGCCCCGCGCCAGCGGGGGTGGTTCG # Left flank : CGGACAGCTTCATCGCGGGGCTGCGGGGTATGGAGTGCCTACATCCCGGCACTCCTCGACCAGCACATACAACTTTCCCGGCCAGCAGGTGTACATCACCCACCAGCTGCACCACGGCATCGCCAACGCCCGACCGCTACACCCATTGCCCACGCCGATCGACGATCGCGACACGTTAACCCACCGCGACATACGCCGCCACCGCGACCACCGCGGCAGCATCCTTCACGAATACCAACGTGCAGCACTACTTACACGGATGAGCTATTCGGCAGGGAACAGAGCCACCGATTGCCAGCATGGGAGCGACCGGACACCCCGCTGCTCCGGCCTCCCCCGCAATGCACTTCGCGCTAGACCTCACCTCTGAGATCATCTCCAACATGACCACGAGACCTCGTCCTCACCACCGCGCTAGACGGCCCGCTGGCGCTGCTCACGCCAACCTCCAACTGAATGAAAACGGCGTTGACCGGGAGTAGAGTCCCAGGTCAGCAAGT # Right flank : CGGCAACAGTGTGGGGGGCCTTGAGGGGGCCGACGCCGTCGTGATCTCGAGGGCTGCGGTTCGATGGTGGACTTTGCCGTGTATACGAGCGTCTCGCGGCCAGGGTCGACAGATCCCGTTGAAACCCCAGGGTCACAGGGTCAGTCAGTGGATAGGTCAGACCCGCCGGGAGACGCTCCTGAATATCCTCCCTGTCAGTCGGGCAAGGCAGGCGCAGGCCGGCGCTCCGCAGGTGCATGCCGACGACCTACTGGTCTCAATCCCCGGCTGTCGGTGTTAGCGTCGGTTGCGGGCTGACAGCAGCAGGCCGTCGTAGTCGACGGGCCTCCAGCGGTCACGGCCCGCGGTGCGGACAGCCCAGCCCTGTTCGTTGGATGCGGGTTCGACGAGGACTGCTTGGCCGTCGCCGATGCGGGTGGCGAGGGTTTCCCAGAGGCGGTCGCGGATGCGGCGGCTGGGGTTGCCGACGAAGACTCCGGCGTTGACTTCGACCAGCCAGC # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCAGCGGGGGTGGTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 193859-195531 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEHJV010000001.1 Streptomyces hygroscopicus subsp. hygroscopicus strain 5-4 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 193859 28 100.0 33 ............................ GCCCGAGGTCATCGCGGGCGCGACCGTGGGTCT 193920 28 100.0 33 ............................ CGCGTGGGACACCTGCGGCTTGCGGTGGAGATA 193981 28 100.0 33 ............................ ACGCAGCATCCATGGACGGGTCCGGGATGGACT 194042 28 100.0 33 ............................ GGCCCGATGGGGTATCGCCGGGACCACCCGCAC 194103 28 100.0 33 ............................ GCCGTCCGTGACCCGCGGGGAACTCCGCACCTT 194164 28 100.0 33 ............................ CTGCTCGATCTCGTGGCCGTGCCCGGCGGGCGT 194225 28 100.0 33 ............................ CTCCCACTCCAGCTCTCTGACGCTCGCCAGGAT 194286 28 100.0 33 ............................ CTCCTGGGACACCTGCGGCTTGCGGTGGAGATA 194347 28 100.0 33 ............................ ACGCAGCATCCATGGACGGGTCCGGGATGGACT 194408 28 100.0 33 ............................ GGCCCGATGGGGTATCGCCGGGACCACCCGCAC 194469 28 100.0 33 ............................ GCCGTCCGTGACCCGCGGGGAACTCCGCACCTT 194530 28 100.0 33 ............................ CTGCTCGATCTCGTGGCCGTGCCCGGCGGGCGT 194591 28 100.0 33 ............................ GTCGCAGGACGGAGCCTGTTCGCCGGTGATGAT 194652 28 100.0 33 ............................ GCGGTCAGGTGCCGAGAGAATCCCAGAATGAGC 194713 28 96.4 33 ...........G................ CAGACACGCCGCAACGGCGGCTGCGCCGACCCG 194774 28 100.0 33 ............................ TCTCTGACCCATCACGAACCTGGGGTCTGCGCT 194835 28 100.0 33 ............................ GCCGGAGATGAGCGCCCGGCCGGAGTACAGGGT 194896 28 100.0 33 ............................ CTGCTCGATCTCGTGGCCGTGCCCGGCGGGCGT 194957 28 100.0 33 ............................ CCTCTGACCCATCACGAACCTGGGGTCTGCGCT 195018 28 100.0 33 ............................ GCCGGAGATGAGCGCCCGGCCGGAGTACAGGGT 195079 28 100.0 33 ............................ CTGCTCGATCTCGTGGCCGTGCCCGGCGGGCGT 195140 28 100.0 33 ............................ CTCCCACTCCAGCTCTCTGACGCTCGCCAGGAT 195201 28 100.0 33 ............................ CTGCTCGATCGCCGTGGCGAGGACTCGGGCGTG 195262 28 100.0 33 ............................ CCGTCAGCAGACGTCTCCACCGTCAACACGCGC 195323 26 89.3 33 ............--T............. TCCCTCGGCTCGCCGCCTCCCATCTCGCGTCCT 195382 28 100.0 33 ............................ GCTGCGGGCGGCTGGGCTGCTCGCGCCGTGACG 195443 28 100.0 33 ............................ GGCGGACCCGGGTGTGCTCGGGCGGATCCATGT 195504 28 92.9 0 ...........G.........C...... | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.2 33 GTCGGCCCCGCACCAGCGGGGGTGGTTC # Left flank : GACCGCACGTACCGCCTCGGCCCCCTTCGGCCATAATCGCTGAAAGGCTGGCGTCGCCTTCCCGCAATCGTGCACCCCACACAGCCAAGCGAAAAACCCGCGCCCCCGGCCCTCTCCCCCCGCAACATCGTCCAACACACCTTTGACAGACGGCGCCAGAAACCCGTCCCACATGCACTCAGCAACCGCCGCCGTATCCAGAAGATGCGACAGAAGGAGATTCTTCCTCCCACCCGCCTTCTCCTCGGACTTCCCCCAAAGCACCCCAAGGGCTGCCAAAACATCCAGGCCATCGCCAGACAAGGAACGCCCCACCACATCTCCCTCTCTGCTCCGTAAGCTAGTCGGGCACCCTAGCCCCCACCACTGACAGCACCCCCGAAATGACCACCAGAGCCCGCTCCCACCACCTCACCGACACAGACTCCGCCATCATGTGCGTCAGAATCGAACTAACTCAAAACAACCCTGATCACGGATAGAACCCCAGGCCAGCAAGT # Right flank : CGAGGGTCCCGGGTCCGCGCGGCCATCCCGGGTGTCGACCCGACCTCGACTCCGTACCGGCCCATCTGGCTGCCGCGGCCCGGGCGTATCTGCGTCAGAAGTTCATGACGGTCCCGGTGGCCGTCTCCGGCGCCAACTTCGGCATCGCCGAGACCGGCACCCTGTCGGTGGTCGAGTCAGAGGGCAACGGCCGCATGTGTCTGACGATGCCCGACACCCTGATCACCGTCATGGGCATCGAGAAGGTGCTGCCGCGTTACCAGGATCTGGAAGTCTTCCTGCAGCTGCTGTCGCGCTCCTCGACCGGTGAGCGGTGAACCTGTACACCTCGATGTGGACCGGCGTGCCCCCGGGCGACGACCCGCAGGCGTTCCACTTGGTGCTCCTCGACAACGGGCGCACCGCGGCGCTCGCGCGTCGCCCCTGCTCCCGCGCGGGCGACCAAGGGCGGCTGAACCGCCGGGGGCGCGCCACGGGCCGGTCACCTCGCCGAACGCCGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCAGCGGGGGTGGTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.00,-12.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //