Array 1 63703-61411 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZGV01000003.1 Moraxella catarrhalis strain COPD_M97 NODE_3_length_357302_cov_22.3951, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 63702 28 100.0 32 ............................ AACAGCATACCTTCACTGGCTTGGCTAAGTTT 63642 28 100.0 32 ............................ GCCACGAACTTTCGGGCAGATTCATGATTTTT 63582 28 100.0 32 ............................ CATCGAATCGCAAAAACTCACTGTTGATCAAG 63522 28 100.0 31 ............................ ATATCGCTAAAACTGTGCCAAGCGTATCATA 63463 28 100.0 32 ............................ GATAAGCTGTACGGGCTAAGCGATACCACTGT 63403 28 100.0 34 ............................ CGCCAAAAAGCCACGCATTCGCCAGTTCCTTGCC 63341 28 100.0 32 ............................ ACTGTCAATATAAGCCTGCGGAAATTCATAAA 63281 28 96.4 32 ....G....................... GCCGATGGCTTCTTGGAGCATGGCAGCCGCCC 63221 28 100.0 32 ............................ GCCGTGCCCCCATTGATGCCTTTTTTGTCTGT 63161 28 100.0 32 ............................ ATATCCAGCGCCATTACCAGCCACCCACTGCA 63101 28 100.0 32 ............................ TGCACGCAAAGAATTTCATGAAGATGCTTTGC 63041 28 100.0 32 ............................ AGAGCGTTTTGATAAGTCTTTTGATGAAATTC 62981 28 100.0 32 ............................ TAGCAAATCAGCTTAATCTTTTTATTAAAGAC 62921 28 100.0 32 ............................ TGCACGCAAAGAATTTCATGAAGATGCTTTGC 62861 28 100.0 32 ............................ AGAGCGTTTTGATAAGTCTTTTGATGAAATTC 62801 28 100.0 32 ............................ TTCGTAGGTGTAACTATCACAAAGGTGAACTT 62741 28 100.0 32 ............................ TCATATTCAGCATTATAATTGACATGGCTGTT 62681 28 100.0 32 ............................ CTTGATAATTTCTAATTGCGCGGCGCGTATAT 62621 28 100.0 32 ............................ ATTTAAGAAAAACTAAACCAAAGTACCAAGAT 62561 28 100.0 32 ............................ TGAGTTTATGTTTTTGGGTTTTACATCTCAAA 62501 28 100.0 32 ............................ TCACACAAGTTTTTGCCAAAACAGTATGACCA 62441 28 100.0 32 ............................ TCCAGCGGATAAGTTGTCAAATCTTGCCCCGA 62381 28 100.0 32 ............................ AAAGCTTGTCTGAGCGGATTAATACCGTGCAA 62321 28 100.0 32 ............................ TCATCGGTGTCGGTTACCGATTTAATTTGTAG 62261 28 100.0 32 ............................ TATTCTCTGGTGATTTGATTGTAGCAACAGTG 62201 28 100.0 32 ............................ ACGCTATTAAGCAAAATAACATCAGCAGACGC 62141 28 100.0 32 ............................ TCGTAAAAATCGCAAAGTCAACAAAATCAAAA 62081 28 100.0 32 ............................ TCATCGGTGTCGGTTACCGATTTAATTTGTAG 62021 28 100.0 15 ............................ ATCGGATTAAAAGCT Deletion [61979] 61978 28 100.0 32 ............................ GAAAGTTATCAAAACGGTTTTGGCAGTACTTA 61918 28 100.0 32 ............................ ATGGATTTACAGAAACTAGAAAAAGAATTGAG 61858 28 100.0 32 ............................ TCCAGCGGATAAGTTGTCAAATCTTGCCCCGA 61798 28 100.0 32 ............................ CATTAAGAGCTTCAAAAATCGGATTAAAAGCT 61738 28 100.0 32 ............................ ATACGCTCAAACCGACCGATTTGAAAGCAATT 61678 28 100.0 32 ............................ AGACTTTCTTGATTTGGAAAAGCCATTTTAAA 61618 28 100.0 32 ............................ GATAACATTGTCATCGCTCATGTTGAAAATGA 61558 28 100.0 32 ............................ ACTATGTCAGTCAATCTCATTGGTGCGTCAGC 61498 28 100.0 32 ............................ GTTGAGCTGTATCCTCTGATTCTCTTATTGAT 61438 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 39 28 99.9 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTCAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //