Array 1 1024873-1024171 **** Predicted by CRISPRDetect 2.4 *** >NZ_QATE01000042.1 Salmonella enterica subsp. enterica serovar Saintpaul strain sg_w11 w11_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1024872 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 1024810 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 1024749 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 1024688 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 1024627 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 1024566 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 1024505 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 1024444 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 1024383 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 1024322 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 1024261 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 1024200 29 96.6 0 ............T................ | A [1024173] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1042502-1041132 **** Predicted by CRISPRDetect 2.4 *** >NZ_QATE01000042.1 Salmonella enterica subsp. enterica serovar Saintpaul strain sg_w11 w11_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1042501 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 1042440 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 1042379 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 1042318 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 1042257 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 1042196 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 1042135 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 1042074 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 1042013 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 1041952 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 1041891 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 1041830 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 1041769 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 1041708 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 1041647 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 1041586 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 1041525 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 1041464 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 1041403 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 1041342 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 1041281 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 1041220 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 1041159 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //