Array 1 61706-58862 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFBY01000017.1 Acinetobacter baumannii strain TG31299 Acinetobacter-spp-TG31299_249, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 61705 29 96.6 31 ............................T GCAGTTCTGCGTTACGTGTTTCAGGATGCAT 61645 29 96.6 31 ............................T AAAGGGCGTGGCAAAGGCATTACGTGTGAAA 61585 29 96.6 31 ............................C TCTACACCTTCGCGAATAAGTACGCAGGGCT 61525 29 96.6 31 ............................T TCATGCGTGATGCAAAGCGACTTGCTGCAAT 61465 29 96.6 31 ............................T GAGCAGGTCGGTTATTCTGAACCTGAAAATA 61405 29 96.6 31 ............................T CCAAAATACCTTTGAGGACCTTGTAGAAGCC 61345 29 96.6 31 ............................T AAAACCATTGTTACTAGATGTACCTGTATTT 61285 29 100.0 31 ............................. GTCAGACCCTAGCTTTTGAGTCACACTTTCG 61225 29 96.6 31 ............................T TCTGCACTCTGAAGATAAACATTACAAGTAA 61165 29 100.0 31 ............................. CAAGCGATAACTTGCCGCCAATCACTGTTTA 61105 29 96.6 31 ............................C TCAAGACATCAAGATCAATAAGACAGTTGAG 61045 29 100.0 31 ............................. ACAACGCAGTATTTTTGCGATGTTGCAAAGC 60985 29 96.6 31 ............................T AATGCTCAAAGTTATAAAAATAAGACTCCTG 60925 29 96.6 31 ............................T GTTGGGCCAATAATCAGAGTGTGGCCTACAT 60865 29 96.6 31 ............................T CAAGGATTGACTCACAAGATCGGTAATTGTA 60805 29 100.0 31 ............................. GTCTGACCATGGCCCGATATTCCCGATCCGG 60745 29 100.0 31 ............................. TTAGAACCAAAAGTTACTTCAAAAGAACGAA 60685 29 100.0 31 ............................. ACTATTCCTAAAATAATTGATACATAGATAA 60625 29 96.6 31 ............................T CTACAGCAGCCGTCCAACGGTGTGTATCGAT 60565 29 100.0 31 ............................. TCAACAACAATGGTTAAACTGCCATTAATCA 60505 29 100.0 31 ............................. AAGACAGTATTTTGGTAGCGCATCTCCTGCC 60445 29 96.6 31 ............................C TTGTACGAGCGTATTAAATGTACCTTCATCA 60385 29 100.0 31 ............................. ACCGATGAAGCACGAAACACAATCATGCTTT 60325 29 100.0 31 ............................. TACGGCGGATGATGTGGTTCGCCTTCATAGC 60265 29 96.6 31 ............................T TTAGCCACAGCACCGTTTACACTTGGAGCAG 60205 29 96.6 31 ............................T AGTGCACGTAGGTCATGAAAAGATGGGCGTT 60145 29 100.0 31 ............................. GAAGTACGAATCAATGTGAATGAATAACCAA 60085 29 96.6 31 ............................C AGTAACAGCAAAAACAAAAACAGTAACTAAA 60025 29 96.6 31 ............................G TACAGGGGAATTCACGTAGTGCTGGAACAAT 59965 29 100.0 31 ............................. ATCACCATCATCGGTGGCATTAGCTTCAGAC 59905 29 100.0 25 ............................. TCACCAGTGCCAGTGCCAGTGCCAG 59851 29 100.0 31 ............................. ATATTCAAGAACCAGTTTCAAATATTGTTAT 59791 29 96.6 31 ............................G TATGTAGAGTTGAAATGTAGTCCTGCGAAGA 59731 29 100.0 31 ............................. CCACTTGTCTTGACAGCAACTATTGAATCCA 59671 29 100.0 31 ............................. TCTCCCATTCTTCATCTGACTTCAGAAAATC 59611 29 100.0 31 ............................. GAATGTCTAAAATATCTGAGGCATCAGCAGA 59551 29 96.6 31 ............................G TCATCAATACGCTTCAGTGCATCAATGTCAT 59491 29 96.6 31 ............................T AACAGAAGCGCAAAAAAAAGCGTATATCATT 59431 29 96.6 31 ............................T TCACCTGCAAAGTAAATCGCATAAATCTCGC 59371 29 100.0 31 ............................. ATTTCAGCGTCAATAGTCTCAATATGATCGA 59311 29 100.0 31 ............................. TCCCGGAAGGCTTGGCTAAACTTGTACTTTT 59251 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 59191 29 100.0 31 ............................. CTTGATGCAGGTCAGTGCAATAAAAATGATC 59131 29 96.6 31 ............................G ACATGGCTATGAAGTTTTATACACATACAAT 59071 29 100.0 31 ............................. CAACAACGCTGTCAACCTTTAGCTAATAAAT 59011 29 100.0 32 ............................. TTAAGCCTTTGATTCCATTGGGTTTTTCTTAG 58950 29 100.0 31 ............................. AGAAAGGTCTAGCAATTGGGGCTGTAGGTAC 58890 29 89.7 0 ........................AT..T | ========== ====== ====== ====== ============================= ================================ ================== 48 29 98.1 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : GAGATCCATGCACGTGTAGCCGTATTAAATAAATTTACAGAATTAGGCAGACCTCATACCCAAGTTGTAACCTAAATTTTAGCAACTTAGGAAAACTTTACCTTCAAAGGCTTTATGCAACAAAGCCGTTTTAAGGTGTAACTGGTGCAATC # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAAGATGGCGTCAATTGAACAAATATAATAATATACTGATTTATCTTAATTAATTTTTATAAAAAAATCCCAGTGTACATGACAGTGTACAAATTATATGTTGCTGGCCTATTTCCTTCGGGTTTGGTTGCTATATACGGAGTACAACTCATGTATTAAACACCTTACTGGCAATCCAGTAACACTACCCTACTCCACCACTTACACAGCATCACTTCGACATCTCGTCAACGCAATTTTGCGTTCGGCATTGTTTTCAAAAGTTTATCCAGAATTAGACGCACCTAAAACCCGATAAAACCCTATCAACTCTTATCATTAGCTCTTAATAAAACGTAGTCTTTTATCCAGGTAGCTACTACGAATTTCTCGTAGTAAGGCACTGTATTTGAAACATGGAAATGAGATTCCTTAAATTAGCGATAAACCTTGTTGTATATAGCTTCAAG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9974-12403 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFBY01000078.1 Acinetobacter baumannii strain TG31299 Acinetobacter-spp-TG31299_310, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9974 29 100.0 31 ............................. TCAAAGCACCGGGATAGACGAATTGCTCAGG 10034 29 100.0 31 ............................. ACCATACCAAGCTGCAAACACAACCGCACAG 10094 29 96.6 31 ............................T CGATTGGCAGTTAGGCGAAATGTGGTTTTCT 10154 29 100.0 31 ............................. ATAGGCTTAGCATGTAGTTGGTATTGTGAAT 10214 29 100.0 31 ............................. ACAAGCGAAAGTGGAGGAGCTGCAACGCAGA 10274 29 96.6 31 ............................T TCATGCCCGTTTTGCAAATTATTTCAGAAGG 10334 29 100.0 31 ............................. TTAAGAGTAACGATTAAATATTCTGCTTTAT 10394 29 100.0 31 ............................. AGCTCACCGTAAAAAGATCTGTAATGAAGCA 10454 29 100.0 31 ............................. TTGCCTGAGTTTAAGCACAAGGAGCCCTCTC 10514 29 96.6 31 ............................T TAAAGCCAACTGAGAAAATGTATCGCATTCT 10574 29 96.6 31 ............................T GTAGGTGCATTTGTCTCTTTTTCGAGTAATG 10634 29 96.6 31 ............................T TGATCTACCCGATCTTCGCTTGTAATAACAA 10694 29 100.0 31 ............................. GAATCTATCGCCAACAGTCTCGATACCAAAT 10754 29 96.6 31 ............................T GTATCTTCTTGTACTTCACTTGATGCAGGCC 10814 29 96.6 31 ............................C AGACTAATAGCAAGTTAGATACAACTAATTC 10874 29 96.6 31 ............................T GAACCAGAACCCCCACCATCACCAGTGCCAG 10934 29 100.0 31 ............................. GTACCAGTATCAATTGGTGTACCTGAACCAG 10994 29 96.6 31 ............................T TAGCTCAACAAGCTGAACGCGATACCTATTT 11054 29 96.6 31 ............................T AGCTCAAGAATTACATAACTCAAAGATTGAA 11114 29 100.0 31 ............................. TGTTCTCTTTGAAGTGACCACCCTCCTAACT 11174 29 96.6 31 ............................T GTCAGTTTATGGATTCCGTTTGCTACAACAA 11234 29 96.6 31 ............................T AAAATTACCCATCCTTCTTGCAGCCCATACC 11294 29 100.0 31 ............................. GCCTGTACAAATATTTCAAGAGCATCAAAGA 11354 29 100.0 31 ............................. TCACGCCACCTCAAATCATCAAATACTTTTT 11414 29 100.0 31 ............................. GTTGCTACATCACCCGGAGTTGCTAAGCCAA 11474 29 96.6 31 ............................G CACCGCTAATCAAGGCTGGGTCTTGTTTTTT 11534 29 100.0 31 ............................. CAGGTGGCCGCATCCTCTACTATTTGCTTAA 11594 29 100.0 31 ............................. TGTAAGCGTGACAACTGCTATTGGATTGATA 11654 29 100.0 31 ............................. TCAGATTTAGCTATGTGGGGTCGTGAGCGTC 11714 29 96.6 31 ............................T ATGATCATCGTAAGGCGCGAAAAGTGGATTG 11774 29 100.0 31 ............................. AACCACTCCATAATTGCAGGTGTTGAAAGCT 11834 29 100.0 31 ............................. GTCACAAAAGGCAGCTCGTTCAAAGAGATTC 11894 29 96.6 31 ............................T TCACCACTGATATAAAGCTTGTCACCGGATT 11954 29 96.6 31 ............................T ATCTACAGACATCCAAGTTGAAGGTGAAACG 12014 29 100.0 31 ............................. CATGGTCAATGATAGAGCCAGAACCACAAGA 12074 29 100.0 31 ............................. TCTGGGTGGCTATGAACATATGCAGTAATTT 12134 29 96.6 32 ............................T GTTTGCTCAATCCTTGAATTGGCTAAACCTGC 12195 29 100.0 31 ............................. AGTCTCGGTAAACGTAGAGATAGAGATACGC 12255 29 96.6 31 ............................T GTTAGGAGCCAAAAACTCACTTAAGATAGCC 12315 29 100.0 31 ............................. TAGTCGCTTGCGGTACGATCTTAGCTGCACC 12375 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 41 29 98.5 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGACACTATTGCGGATATAGCCAACAGCTACCTCGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCTTTACCTATTCTACACGGTAAAACACGTCGTGGAGGACTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTAATGCCAATCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : AATCAGTTTTAAGGGGCTTTGTTGCACAAACCTATCTCTAAAGGCTTATTCCACAATATAATTTTGAGATGAATAAGCCTACACCTAAAATCTACCGTACAACCAATTGGCCCACATACAACCGAGCTCTCATTAATCGTG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 28387-22172 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFBY01000016.1 Acinetobacter baumannii strain TG31299 Acinetobacter-spp-TG31299_248, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 28386 30 93.3 30 ............................TG AAAAAATTATTAAATTGACTGAAGATTGCC 28326 30 100.0 30 .............................. TCGGCACAGCTTTAAACCACAGCGCGTTAG 28266 30 93.3 30 ............................TG GAATACATTTTCACGCTGCATTCCAATAGG 28206 30 93.3 30 ............................GA TCCATTAACTGGAACGGTTTTTCCACCTGC 28146 30 100.0 30 .............................. CATTCGTCATGATCATGTGAGTCCGAGGAA 28086 30 93.3 30 ............................TA CGCAACAGATGCAGCCGAATTACTCATCTT 28026 30 93.3 30 ............................TA TTGGCGGTGGTGGTGGCGGAACTACAGATG 27966 30 93.3 30 ............................TC AAGGATTGCCTGAATTTGTTCAACTGGCAT 27906 30 96.7 30 ............................T. GTTAAGGCCGGTAAAAAACCGCTAAGAGAT 27846 30 100.0 30 .............................. AAAGTTTTAAATCATCCGTACTCTAGACTT 27786 30 93.3 30 ............................GA GTTAATCCGCCTAAGGATAAACCACCAGAA 27726 30 96.7 30 .............................A CGCCTGTTTTTGCGCCTTCATTTTTGCGTA 27666 30 96.7 30 ............................G. ACCTTATCGAAATGATGTATCAGGCAATAC 27606 30 100.0 30 .............................. GTAGGTCGTGCTCGCGGCTTTGATTTCTTT 27546 30 100.0 30 .............................. GCGATTGAATAATTCTTTAATACCGTTTTC 27486 30 96.7 30 ............................T. TGCGTTCCCACAAAAGCCCACGATATTCAG 27426 30 100.0 30 .............................. AATCAAAACCATACGTGGAAACATTGATAT 27366 30 93.3 31 ............................GA AAATGTCAGGCCCTCAATCTGATAAGGATGT 27305 30 93.3 30 ............................CA GATGAAATGTTATTAAGAATGGGCTGGGGT 27245 30 100.0 30 .............................. GTGAGGCACCTGTACAAGCCATATACATGG 27185 30 93.3 30 ............................GG CAGTAAGACCACCAATTGCCAACAGGCCAC 27125 30 96.7 30 ............................C. AAGGTTGCACCACTAGGAACCACAGAAACT 27065 30 93.3 30 ............................GC CAGCATATTTTTTGACGTCCTCTGGTGTCA 27005 30 96.7 30 .............................A CACGCGTTAAGCATTATTCCATAATCAAAA 26945 30 96.7 30 .............................G ATAAAAATGATCATCCTGATATCGAGATAA 26885 30 93.3 30 ............................TG TACGTCAAATTACTTCTTATTGTAGTTGGG 26825 30 96.7 30 ............................T. CATCATCAAATAAATCTTCGTATTTAGTGA 26765 30 93.3 30 ............................TG CTGCTTGAACAACATGAATTGCCCATTCAG 26705 30 96.7 30 .............................A AAATATTGATACGATGGATTAACAACAGAA 26645 30 96.7 30 .............................G AAGCGTCATGAATATTTGGTTTGGCTTGAA 26585 30 93.3 30 ............................TG ATCATTAGTGCCTCTTCGGAAATCAACTTT 26525 30 96.7 30 .............................A AGAGTATGTATTAGAGGGCTATGCACTTAC 26465 30 93.3 30 ............................TG AAAATAATTAAATGGTCTATCACCGTCTTC 26405 30 96.7 30 .............................G TAGATGCAGCACACAGCAATCAGGGCGCTC 26345 30 96.7 30 .............................G CGCGGAAGAGCATTCGGGTGAGTTGGATTA 26285 30 96.7 30 .............................G GCAAAAGGAACGGCTGGCTAACGCCACTAT 26225 30 96.7 30 .............................C ATTCCAGCAAACAACAGTGTAGATCCAATT 26165 30 93.3 31 ............................TC TTTCACAAAAAATGATGGTTATTTTGAATGT 26104 30 96.7 30 .............................A TAAACAGCATTTCATCAGTTGCGTAATAAA 26044 30 93.3 30 ............................TC CAAAAGAGCAAGCAGAATTTAGTGCATGTA 25984 30 93.3 31 ............................CA CCAACCGACAATGTAGCATCGGCAACTAAAC 25923 30 93.3 30 ............................TA TGACACGCTATCAAGTGACGGTGCAAATAA 25863 30 93.3 30 ............................TG ATCTCTCTTAGCTTTGTATTCAGGGTCTAA 25803 30 93.3 30 ............................TA TCCATTTTCTGATGGTGGCGCATTCTCTTC 25743 30 93.3 30 ............................TC AAGCAAATCCCGATGATCCTACAGCACCTA 25683 30 96.7 30 .............................C AAGTTAGAGCTATTAGAAAGAATTATTTAA 25623 30 96.7 30 ............................T. TCGGGGTGGTTTTATTTTGCCTAAATTAAT 25563 30 96.7 30 ............................T. GTATTGTTGGGTTTCTAGTTACCAGAGCAG 25503 30 93.3 30 ............................TG ATTCAGTAGGTGCTAACTGGTATAACTTGA 25443 30 93.3 30 ............................CG TTGTTGGGTCTTGGTTGCGTAGTGGCCCCC 25383 30 93.3 30 ............................TA AACCATTATTAGGGTTTACGGTATTACTTG 25323 30 96.7 30 .............................G TCCATAAGACCCTCCATTTGTTTATATCTT 25263 30 96.7 30 .............................G AAGGGTATAGCAAATATCGTGATGGAAATG 25203 30 100.0 30 .............................. CATCGCCAGCAACAAACTGCAATGAGCCAG 25143 30 96.7 30 ............................T. GGTGTGATCATCAATACAGATGGGACAGGT 25083 30 93.3 30 ............................CG ATAGAAGATACAGAAGAAAATAATGCTATT 25023 30 96.7 30 ............................G. CAACCAAAGAACCCCAAGCAAATCGAGCAA 24963 30 100.0 30 .............................. TATCTAAGCGTCCCATTAGAAAACCTTTAT 24903 30 96.7 30 ............................T. TCAGATGAAACCATACGCACTAAATGCATT 24843 30 100.0 30 .............................. GTAATCTTGGTATGGGAGGTGTAAAGCCAG 24783 30 93.3 30 ............................TG TTGACCCATCTATTGATGCATCTGTAAATA 24723 30 93.3 30 ............................CG ACTGCTCCTAAAGCTCCGCCGACTGACATT 24663 30 100.0 30 .............................. GTGAACATGCATGCATTGATGCAATATGCG 24603 30 93.3 30 ............................CC ACTGTAGTACGAGTAACGTTACCGACTAAA 24543 30 100.0 31 .............................. GACATACAAACCCCTCAATAAAAGATGGGGC 24482 30 96.7 30 .............................C AAATCTTGATGACATGCTCAACAAAACACA 24422 30 96.7 30 .............................G AGGGTTATGTTTTGGTTTCTAAGGATAAGT 24362 30 100.0 30 .............................. CATACATTAACTTTAAATAATCATTCTGAC 24302 30 96.7 30 .............................C ATGAAAAACTAGCTTCCACGACATCAATCC 24242 30 90.0 30 ...........T................TC TTGCTGTGCATAAGCCTGTAAGTTATTTAA 24182 30 96.7 30 .............................G TTGCCCGGATCACGACGATCATTAGAATAA 24122 30 96.7 30 ............................T. GGAGTCATCAATAAGAAACAATCCATTTAA 24062 30 96.7 30 ............................T. CTGGATCTATTCCAAAGTGTTTGCAAATTT 24002 30 100.0 30 .............................. CTAATCGATGGTGAAGATTTTGAACAAGAT 23942 30 96.7 30 ............................G. TATCTCAATGGTGTGACTTGTTAGCACTAG 23882 30 96.7 30 ............................T. AATGCAATTCGGAGCATGGCGTACCGAAGA 23822 30 96.7 30 ............................T. GTGTGGACTCCTCAATCAGCATCTTGAAAT 23762 30 93.3 30 ............................GC TCACAAGTCAAATACTATTTTGCATTATTT 23702 30 100.0 30 .............................. CTTTTTGCTTATAGTAACAAGTAGCAGAGT 23642 30 93.3 30 ............................GA ACTGCAATGCTGTGAGTAACGAACCTTGAT 23582 30 96.7 30 .............................C TTACCAGACACAGCACCTTCTTGAAGCATC 23522 30 100.0 30 .............................. GACGGTTAGTTACTTTTGATGTACCGCCAC 23462 30 96.7 30 .............................C TAACTCACCGCGATAAATAGACGCGATACC 23402 30 96.7 30 .............................G AGACACAGAAAAAGAATGTGAACAATGGGC 23342 30 96.7 30 ............................G. CGATTAAATCAGTCAAAGGACCCTAAGCCA 23282 30 93.3 30 ............................TC AAACTCACAACCTAGAAAAGATTGCTAAGG 23222 30 100.0 30 .............................. GAAAAAGCCCCATTCGTTGTGAATAGGGCT 23162 30 96.7 31 .............................C CAAAAGCTTTACGGTAAGACACGTTATGCAG 23101 30 93.3 30 ............................TA CGAAAACAAAAGATACTCATGCACCAGAGA 23041 30 93.3 30 ...............T.............A CAGCATTTACACCAGCAACCTTTAAAGCAG 22981 30 93.3 30 ............................TG TTACATGCCCAATTGGTTGGCGCATGTCAT 22921 30 96.7 30 ............................T. CTAAGCGAAGGCTAACGCTCACATTCAAAA 22861 30 93.3 30 ............................TG TAAAACCGAATCCCAAGCTGAATAGGTTTT 22801 30 93.3 30 ............................GG ACATGTGAGCTTCACACCATCCTTCAGGCA 22741 30 96.7 30 ............................T. GTTGCGGCTCTCGCATGATGTGGTTTGATC 22681 30 96.7 30 .............................A CTGAAAAGATGTTGAGTGCAGGTTGTTCTT 22621 30 96.7 30 ............................T. GATGCTGAAAACTTCACAGCAGGCAATCCA 22561 30 93.3 30 ............................TG TAAAGGATGTGAGGAACGTCGTGAGTGGAT 22501 30 96.7 30 .............................A CTGACTAGTGATTTGAGGAATGTGCTCACC 22441 30 93.3 30 ............................CA AACACAGCATTATTGGGCCTTCAATACGAT 22381 30 93.3 30 ............................GA TGCAGGCGGAGTCTGCTATGCGACTGGTAC 22321 30 93.3 30 .................T...........A ATAACCACGGTTATGGTAAGTCACTTTTAC 22261 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 22201 30 66.7 0 ...T...A...T.....T..C...AGCGT. | ========== ====== ====== ====== ============================== =============================== ================== 104 30 95.4 30 GTTCATGGCGGCATACGCCATTTAGAAAAT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACTAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAATAGACAAAGCCGAACAGCCTGCTGAAGTTGAACAGATTAAACAGTTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //