Array 1 2759287-2755395 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG657757.1 Streptomyces viridochromogenes DSM 40736 supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================================================================================== ================== 2759286 26 100.0 35 .......................... GTCGGCCCGGGACACGGGCGGCGGCAGCACGGGTT 2759225 26 100.0 35 .......................... GGCCTGATCGTGTTCCCGACCAACCGGCCGATGTT 2759164 26 100.0 35 .......................... GCCGCCTCAAGGCGGGCACGCAGCGACCGGGCGTT 2759103 26 100.0 35 .......................... TCACGGAGGAGTACTGGGGCCGGCGGGCTGAAGTT 2759042 26 96.2 35 ......A................... CACTCCTGCGACGTCGTCGAGGGCCATCTGGGGTT 2758981 26 100.0 35 .......................... TCGGGCGGCTCGGGCGCCTCGGCCCGCTCCCAGTT 2758920 26 100.0 35 .......................... CGGTAATGCTTACCGCCTTCGATGATCTCGATGTC 2758859 26 92.3 94 .A..................T..... CGGACCTGGTCCGGACCGCGTTCGCCGACCTAGTCGGCCCCGCACGCGGGGATGGCCGCGGTTCGGCGGGTTCGTCTACAAGGCGGACGCCGTC 2758739 26 92.3 35 .........T.............C.. ATCGCCGAAGATACGCAGAGCGGAATCTTCCAGTC 2758678 26 84.6 35 ..T...A.......A..........A AGGTCCTGCATCGTGACGTCCTCGATGCCGGTGTT 2758617 26 88.5 35 .......A.T....A........... AAAGCCGATGATCTCTGGGATACCTTTAACGAATG 2758556 26 88.5 35 ....T........T.........C.. GTTATGCAGCGCAAGGCCGGTACGGTCTCGTAGTC 2758495 26 92.3 35 ...T...........A.......... CGCATCAGCTCCGGGCCGTTCTCACCGTCCCAGTC 2758434 25 92.3 35 .....-........T........... GCGCTCGCACGGCGCTGGAAGATGGACGTCGAGTC 2758374 26 92.3 35 ....T....................G GGGTTGGTGTACCCGAAGTCGACGGTGATCCAGTT 2758313 25 84.6 35 .........T.T.....-....T... TACGGCACGGTGAACCCGTTCGCCGCCCTGCTGTT 2758253 26 92.3 35 ...........A.............G CACGTCCACCTCGTCTCCGATGGACACAGCACGTC G [2758234] 2758191 26 88.5 35 .T..G............A........ CAGGAAATCGACACCCCAGATTTGGCGGACACGTC 2758130 25 92.3 14 .................-......G. TCGGGCCGCATTAT Deletion [2758092] 2758091 26 88.5 35 ....TT................T... AAGGCCCAGGGCATGGACGGCAAGTGGCGTACGTT 2758030 25 80.8 35 ......-...TT.T......G..... ATTGAGGACCCGTCGGACTACGGCGGCGAGGATTT 2757970 26 84.6 35 .A.....T.......AA......... CTGTCGTCCTGGACGCACACGGTCAGGTCTTGGTC 2757909 26 84.6 35 ...T......GT.....A........ TCCTTTAGAGCGTCGGCGACGATGTCGGTGTTGTC 2757848 26 76.9 35 ......T..TGTA.........T... GGCAACCCGTCGTGGGACTGCTTGGGCCTGATGTA 2757787 26 96.2 35 ...........T.............. ATCACCCAGGGCTACTTGTTCCGCAACAATGGGTC 2757726 26 84.6 34 .......A.T...G.A.......... GGGCGCCTGCGCGCCTTCAAGGAACGGGTGCTGT 2757666 25 84.6 35 A....T-........C.......... AACCGGGACGGCCGGTGGTCGCCTCGGAATCCGTC 2757606 26 96.2 35 .........................G ATGGTCTCCTGGACGTACTCCAGGCCCGGGTTGTC 2757545 26 92.3 35 ...........G........G..... ATGTACATGGCCCGGGCCGCGTTCACGACGTCGTC 2757484 26 88.5 35 ....T....G.............C.. GAGGTCAACAAGTTCATGTCGCCTATGAAGGTGTC 2757423 26 92.3 35 .T.........G.............. GTTCCTGGTAACGACCACTGGGACCCGGGTACGTC 2757362 26 100.0 35 .......................... ACGGAGTACACCTTCCAGGTGGCCGCGGATTCGTC 2757301 26 92.3 35 ..T....................C.. GTCCCTCGCCAGAACGGCAAGAGCGGCATCATGTC 2757240 26 88.5 35 A...................C....A AGGTGCGAGACAGGCTGGGCCGCCATGGCGAGGTC 2757179 26 92.3 35 ....T...........A......... CCCGAGCAGACGGCTTTCATGATCGAGTGGACGTC 2757118 24 84.6 37 .....-.......T......G..-.. GCGGTTCGGCGGGTTCGTCTACAACGCGGATGTAATC 2757057 26 88.5 35 ........AG.............C.. AAGGCCAGCGCGCCGACCGTGTCCTCCAGGGAGTC 2756996 26 76.9 35 A....G....GA......CG...... CACTCGGTCTTGATCCCCTGGATGAGTGCTCAGTC C [2756976] 2756934 26 84.6 35 ........CT...T........T... TACTTCGCCATCACCCTCGATGGGTACGCGCCGTC 2756873 26 76.9 35 ......ATA..T......G....C.. GGGAGGAACAGCGCCTCGATATGGATCACTACGTC 2756812 26 88.5 35 ...........T..A.....G..... TACGTGCACACCGATCCGATGGCGCGGGCACTGCC 2756751 26 76.9 34 .....T.T.TT....T...C...... ACGCCGTGCGACATTTCGCGGCGTCATTGAAGTC 2756691 26 96.2 29 A......................... GGCACGACGATGCCGAGCAGCGGTCAGTC 2756636 24 84.6 35 ...T...........A...--..... AATGAGTAAGAGTGTCCCTCCATCCGCACGGCGTC 2756577 26 80.8 35 ...T....TT.......A...A.... TGGACGTAGAGAGGCGTCAGCGGCTTGGCGATGTC 2756516 25 84.6 35 .....-....T.........G....T GACCAGGTGAAGATCTTCGGGACGCTGGAGACGCC G [2756498] 2756455 25 92.3 35 A............-............ GGCCGGCTGACGTACGGCCTGGAGTACAAGCTGTC 2756395 26 88.5 35 ....G.A.A................. ACCGCGTACTACGCCCGCTAGGTGGAGTACGGGTC 2756334 26 92.3 35 C.....A................... TCGGAGTTGTTCGTGTGCCAGCCGGAGAAGTCGTC 2756273 26 96.2 35 .............T............ CCCGAGACGATCTCTCTTCGCGTTGACCTGGAGTC 2756212 26 96.2 35 .......................C.. TTGACGAGCTCGGGCCCCTGCTCGCCGACCCAGTC 2756151 26 92.3 35 .......T..G............... AGCAAGCCGGGCCAGAAGGTCATGAAGCAGTTGTC 2756090 26 92.3 34 ............T.........G... GACTCCCCGCGATGGCGCAGGTCATCGCAGCGTC 2756030 26 96.2 35 .....T.................... GGGACCGCGATCGTCATGGTGGACATGCCCACGTC 2755969 26 100.0 35 .......................... CAGATGGCGACGTAGGCGCCGCGGGTGTAGTCGTC 2755908 26 96.2 35 ....T..................... CAGTGGTCGCAAGCCGACTTCAACGCGATCATGTT 2755847 26 92.3 35 ...........T.....T........ GTGGTCAACTTGCTGTTGAGGCGGTTCAGGCCGTC 2755786 26 96.2 35 .....T.................... GACTACACCGCGCTCTTCGCGGAAGAGTGCGTGTC 2755725 26 92.3 35 .C..........C............. AGGTCCTGCATTGTGACGTCCTCGAAGCCGGTGTC 2755664 26 88.5 35 ......A.......A..........T CACCCGGAGTCGCAACATCCGGCCTCCGGTGCGTC 2755603 26 96.2 35 .......A.................. TTCGGGCCGGGCATCACCTACATCACGTCGTCGTC 2755542 26 92.3 35 C....T.................... CCGGTCTCCCGGGACCCGACCGCACTCGTCGGGTC 2755481 26 92.3 35 .A.........T.............. TGCCCCATCACCGCGCCCGCCGGGGGCAGCATGTC 2755420 26 88.5 0 .........T.AA............. | ========== ====== ====== ====== ========================== ============================================================================================== ================== 64 26 90.7 36 GGCCCCGCGCACGCGGGGATAGCTCC # Left flank : GACCATCAGCATTGGGGACCGATTCACGTTCCGCACGGTGGTCTCCCCGACCAAGACGCGGGCGGACCTCAAGCAGAAGGGCAAGCCTGTCATCAAGCGGCTCCCGCACGTCCTACCCGCACACGTGCGCACGTGGTTCGAGGACCGCCTCCAACCCGCTGGAACACCCGCCACCGCGCTAAGCGGCATCCCCCGCCTAGGCGCCGACGCCGAGCGGACCACCCTCGCCATCCGGATGCTGCCGCCGGTCAGTACCGACCACCACAAGGGACTGAAGATCACCCGCGCCGAAATTCGCGGCACCCTCACCGTCACTGACCCGGCCACATTCACCAAGACCATCACCACCGGCCTCGGCCGCGCCCGCGCCTATTCCTGCGGCCTCATCCTGACCAGACCTACGCAGGAACAATCCGGAGTTCAGGCAGGCACACCGCGGCTCGACGCAAGTGCATGAAATCGCACATGATCGCCACGAACGTCCCAGCTCAGGAAGGGTT # Right flank : GAGGAGGCCAGCGCGCGCTGAACCTGTCGTGCCGGCCCGGCCCTGCTCGCGGACCGGGCGGCCGAAGCGGTCGCGGGCGCTTACCGGCGACTGGTCGCCGAGCCGGTCATCCGTGACGAGGTCCACCGCGGCCTGCGCCTGCTGTACGCCGCGCCATCGGCGAGCAGTGCCGCTCGAAGAACTCCGCCAGGCTCATGCCGAGTTAGGGCGCTTGGTCCAGCATGTCCCCGAAGGTGATCTGCGTGGTCGGCTGCTCGGCATGGCCAGCCGACTGGCTCAACCTCCGCCACGGCCTGGGTACCAGGCCCGCCCCTGGCGCCCCGGGAACGCGACGTCCTGGCGCAGGTGGCACTGGGCTGCAGCAACGCCGAAGCCGGTCGCAAGCTCTCGCTGCTGCCCGAAACGGGGGTGGTCGCCCGCACGTCGATAGACGTTGCCTCCTCAGGGTGGGGGTAGTGGCCCCGCGGGCCGATGGGCACCCAGCCATCGCCCGAGGACCT # Questionable array : NO Score: 4.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:-0.09, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCCCCGCGCACGCGGGGATAGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [44-49] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA // Array 2 7031795-7030791 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG657757.1 Streptomyces viridochromogenes DSM 40736 supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7031794 29 100.0 32 ............................. GGGGGCCGGCCGTAGCGGGCGGGGGTGTACTG 7031733 29 100.0 32 ............................. CAGACGACAGCGAACGCCGAACCGAACAGCAG 7031672 29 100.0 32 ............................. CACAAGCATTTCGAGATCGAAATCCCCGATTC 7031611 29 100.0 32 ............................. GCGATCTCGTCGGTCTCGAAGTACCGCTCCTC 7031550 29 100.0 32 ............................. CACGAGTGGCTCGTAACGAACGAAGGGGCCGC 7031489 29 100.0 32 ............................. CCTCCCGCCCCGAGGCACAACACGGTGGACGG 7031428 29 100.0 32 ............................. GAAGCCTGGCTGAAGGACCTCGGGAACCCGCA 7031367 29 100.0 32 ............................. GCCAGAAAGGGGTGGAGGGGCCTGAGACCTCA 7031306 29 100.0 32 ............................. ACCTGCACGTCGGGCGCGAGGGTCGGACCCGG 7031245 29 100.0 32 ............................. CTCAACGACCAGCGGGCCATCCAGACCCGGCT 7031184 29 100.0 32 ............................. TCCAGCTTCAGGTGCCGCGCCTTGACCGGCCG 7031123 29 100.0 32 ............................. TGGGGGTGGACCACCATGCCCAGCAGGAACGG 7031062 29 100.0 32 ............................. GCTCATTCCTCGAAAACCTGCTGGCGTCCGAT 7031001 29 96.6 32 .......................A..... ACGGCCAACGTGTGCGCGCGCCGCGTGCGCCG 7030940 28 96.6 32 ........-.................... CCGAGCCGCGAGTTGATGCGGACCACCTGCCG 7030880 29 100.0 32 ............................. GGAGCCACCGCGTGAGACCTGAGATGCTGACC 7030819 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GGCGTCAACCATGACGGGCCCGAGGACTACGGAGACGAGCTCTGGTGACCGTTATCGTCCTCACCAACTGCCCGGCCGGACTACGCGGCTTCCTCACACGCTGGCTGCTTGAGATCTCCGCCGGCGTATTCGTGGGAAGTCCCTCGGCCCGGATCCGCGACGTGCTCTGGGAGGAGGTCCAGCAGTACGCGGGGCAGGGCCGCGCTCTGCTGGCCCACACCACGAACAACGAGCAGGGCTTCACCTTCCGCACCCACGACCACGCCTGGCACCCGACCGACCACGAGGGCGTCACGTTGATCCACCGCCCCGACCCGAACGCTCCCGCTTCCGGCAAGGCCCCAAGGAACGGGCCACCATCCGGCTGGAGCAAGGCCGCCAAACGCCGCCGCTTCGGGAGGGGTTGATGCACATCGATGCACCTATGACCCATTTGCCGGGTTCAATGAAAGTACTCAGAAATGGCGCCCGTCACCAGTAAAGCCGCAGGTCACCCAGTC # Right flank : ACCAAAGACTCGCGGGACCTGTTGGACCGTCTCCCGTGGCCTGCGCTGCCTCTCAGGTTCCTTGTCCCTGATCCCCGGCCGGACATGAACCTTCCTGAGCCGTGGGGTCGCCGAAATCCGGGCCTTCCTCATTGCCGGGTTCCCCGCCGGGACCTGGGGGACGAACTGTTATCTCGTCGCCCCCAGAGTTGACGGGCCGCCGTGACGTAAGGACCGGGCAGCGGCCCACAGGGCCGCCGACGCGGCCGGGTCAGCCTCGAGCTTGGCGACCAGACGCGCCCGGTCGGCCGTTGAGGAATCAGCGGTGACCAGGACCCGCGAACTCACACCACACGATCTTGCCTGGGTGTCGCAGCCCCACGCCCCACTTGTCCGCCAGCTCCGACACCAGCAGCAGTCCGCGTCCGCCCTCGCGGGGTTCTCCCTCGTCCTGCCGCGGCAGCATCGGCACACCGCCGTCGCCGCTGTCGTGCACCTCGATCCGTACGCCGCCGCCCTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 7041529-7043082 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG657757.1 Streptomyces viridochromogenes DSM 40736 supercont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7041529 29 100.0 32 ............................. GTTGGACTCCATCGCCGAGCCGGGGTACTTGG 7041590 29 100.0 32 ............................. GCCTGAAAAATGGGCTTGAGGATGACGTCCCA 7041651 29 100.0 32 ............................. TTCGGCTGCTCCATCGCGAGATCGGCCAGGAC 7041712 29 100.0 32 ............................. CCCAGAACCTTGATCATCTTCCGGGCAGGGCC 7041773 29 100.0 32 ............................. GCCACCGTGCACTGGGGCGACAACGAATCCAC 7041834 29 100.0 32 ............................. ATCTATCTCGGGGCGCCCATCAGGACGATCGG 7041895 29 100.0 32 ............................. AAGGGCTTCCAGCGGCACCCCCGGTGCGACTG 7041956 29 100.0 32 ............................. AGCTCGCGCTTGGCGGTGGTCGCTCCCGTGAT 7042017 29 100.0 32 ............................. CGTGGCCCGGTTATCGGCGCCATCGGGCTCCG 7042078 29 100.0 32 ............................. GCCTTCCGCAGAGCCAGGGCCTCAGCGCACTT 7042139 29 100.0 32 ............................. CAGATCTTGGCGTTCTTCGGGCGCAAGGGGTC 7042200 29 100.0 32 ............................. ATCAACGTTGCGGCCGCGCTGACGACGGCGAA 7042261 29 100.0 32 ............................. GGCCACGGCTCCGGCGTGACCCGCGCCCAGGC 7042322 29 100.0 32 ............................. GGTCTGATCCGCGGCCTGAAGGCGAAGCAGAA 7042383 29 100.0 32 ............................. AGCTCGTTCACGCCGGTCGCGCCCGTGCCGAC 7042444 29 100.0 32 ............................. TGCGTCGGCTGCTCGCCCAGACGGCCCGCGGC 7042505 29 100.0 32 ............................. GTGTACACGATCGAGGGCAACACGGCCAACGT 7042566 29 100.0 32 ............................. ACGCCGCCCTGGCCCGGCCCGTCGGTCTCCAG 7042627 29 96.6 32 ............................T CAGCTCGGGCGGCACGGTGGCGAGGCTGCAGA 7042688 29 100.0 32 ............................. GGGCAGAAGAGCCCGCCGTCCGGGCCGGTCCG 7042749 29 100.0 32 ............................. TCCTCGACGTCCTCGGGCTGCTGCCCAAGCAC 7042810 29 96.6 32 ...........G................. CACTTCAGGTCCCGCTCCTGGTCGGGTGAGAT 7042871 29 100.0 32 ............................. CTGGGGGCGAAGGGCAACAGCCTGGCGGTGTC 7042932 29 100.0 32 ............................. CGCAAGCTGACCGAACGCGGTGCGCCGCCGCT 7042993 29 100.0 32 ............................. TACGACGCCACCGACGCCACCCGCGCCATGCG 7043054 29 93.1 0 ...............A..........T.. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.5 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : ACGCCGGTGTGGCCTTGCCGATGTCGTGCACACCGGCGAGCCATACGGCGAGGGCACGTGCGTCCGATTCGCCCTGGGGCAAGCCCTCGGCCACCAGCCGCCGTACCCCTACGGGCAGCCACCGGTCCCACAACAGGCCGGCTACCGCGGCACTGTCCTCCATGTGCCGCCACAACGGCAGCCAACCATCGGTGTCACGGTCATGCTTGGCCCACACCGACCGAGCCGGCTCCCCGAGCCGAGGCAACAGATCGGAACGAGCCCTCCCCCCAACGCTCATGAGTGATTGATACAGGGAAAATCCGGCTCCACACGCCAAAACAAGCAAATGGAAGAATCTGCAGGAAGACAGCACTCGTGAGACGTACGATGATTGGCTCGCCCGCGAGCCGATTAGAAGCACCTGCGAGTCTAGATGTCGCCATGTGTCGCATTTGCCGAAATCTGCAAAAGTTGGTGAAAGTGCGTCTTGGTGGCAATAAACCCCCAGGCCAGACAGT # Right flank : CAGCAAGGGTGGCGGTCCATGGCGGTCGCGGCGGTGGCGGGAGAGCGGGGGTAGAGGCTAGGGGGTAGGGGGACGCGGACCGGGGCAGGGGTTCCGGCTACGCCGCCCCCAGCGTCCCCGCGATCCCCGAGATCGCCTCCGGGCCCACCCGGCAGCAGCCGCCGATCAGCCGGGCCCCGGCCTGCTGCCAGCCCTTCACCTGGTCGGGGGTGAAGGTGGAGCGGCCGGTCCAGGCGCGGGCCTCGGCGTTCCAGGTCTCGCCGCTGTTGGGGTAGATGACGACCGGCTTGCCGGTGACCCGCGCCGCCGTGGCGGCGGCACCGTCCACGTCCTCGGGCGCGCAGCAGTTGACGCCCACCGCGATCACCTCGTCCACGTCGGCGGCCAGGGCGAAGGCCTCCTCCAGTGGCTGCCCGGCGCGGGTGCTGCCGCCGGCGATGGAGTACGTCAGCCAGGCAGGCACCCCGAGTCCGCGCACCGCCCGCAGCAGGGCCGCGGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 8635178-8633514 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG657757.1 Streptomyces viridochromogenes DSM 40736 supercont1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================== ================== 8635177 29 93.1 31 ................G.......T.... GTCTCGGGCGTGCTCGATGTCGGGCTCGGGC 8635117 29 100.0 32 ............................. CCCTCGGACGCATGGACGGACCCGCGTTCGTC 8635056 29 93.1 32 ............T...........T.... ACCGCGGCGACCAGCCGGTCCCGGGGCCGGGA 8634995 29 96.6 32 ........................T.... GGAGTCTCACAGTCCGTCATTCGGCAGCTCGT 8634934 29 96.6 32 ........................T.... TAGGTCACGAGGTCTGTTCCTTCGTGGTGTCG 8634873 29 93.1 32 ..........T.............T.... ACCTTGACGCCGCCGGAGTAGCCGTGCCGCTC 8634812 29 93.1 32 ...................A....T.... CCCGCAGGGCCGTGCGCGGCGCGTATGGTCAG 8634751 29 93.1 31 ...............A........T.... GACTCGTGGAGGCGCGCTACCGCCAGGACTG 8634691 29 93.1 32 .........A..............T.... ACCCAGTCGCGACCCATGTAGTCGTGAAAGTC 8634630 29 93.1 31 .................A......T.... TAACACTCACGGTGAGGCCGGGTTGCGGAAG 8634570 29 96.6 32 ........T.................... CCGATCTCCTTCTCGGCGGCGCCGATGTTCGC 8634509 29 100.0 32 ............................. GCCGCCGCTCTGGCGAAGTTCAAGACGGACCC 8634448 29 86.2 32 .....T......C......A....T.... CTGTGCTGGTGAGCACCGGTGTGCCAGGGGTG 8634387 29 100.0 32 ............................. ATCTCGCGTAAGGCCGCGTCGATCACCCGTTG 8634326 29 96.6 32 ..........T.................. AACCGGTGAGGTCGTTCGTGTCTCTCTCGTTC 8634265 29 86.2 32 A.......T...............T.T.. CCCCGGATGTTGACCCACGGGTCCTTGGCGAC 8634204 29 89.7 32 A........C..............T.... GACTTCGGGATCACCGTCGTCGTGCTCTGCCA 8634143 29 96.6 32 ........................T.... TGGACGACGCTGGAACGCAAGGAGGCTCAGCT 8634082 29 96.6 37 ........................T.... ACGACGATGGTCAGGATGGTGGCGAGGATTCGGTTCG 8634016 29 86.2 75 .........A......T......CT.... CCGCGCAGCACGTCGGGCCGTCTTCCCTCCGACGCGGGGTGCGACGGCCAGGCCGTTGTAGAACTCGATGCGCGT 8633912 29 93.1 32 ...........A............A.... GACAACGCCCAGCGGCGCAACAAGCACGAGCA GT [8633897] 8633849 29 93.1 32 .......................AT.... GCGCCCCACTTCAACTCCGTGCGGAGCTGGTC 8633788 28 86.2 32 ..........T..G.......-..T.... TCGACGACGTACTCGGGTCCGGCGCCAGGCCC 8633728 29 89.7 32 .C......T...............T.... TCCGGCATCCCGCTGGGCAGGGTCACCGCCTC 8633667 29 100.0 33 ............................. ACTACCAAGGCCGGTTCCCGGTGGGGCTCAACG 8633605 29 100.0 32 ............................. CTCCCTTGGCCCAGTCGTCGCACAGCCGCTCG 8633544 29 93.1 0 ........G..................A. | C,C [8633518,8633521] ========== ====== ====== ====== ============================= =========================================================================== ================== 27 29 93.9 34 GTCCTCCCCGCCGACGCGGGGGTGCTCCG # Left flank : GCGACCGCGCATCGCGCTGGTCGCCCGGACTGGGGGGCATGAACGCACCGCTTAGCTCAGACGAAGTCCCTGCAGGTCACCGGTCAGGATCCTCCGTATGGCCGGTAGTGACTTGCTGCCGGGTTGCCCCGATCGCAAAGCGGTTTGGAAGCTGTACCTCGATGGTCCAGGGACCAGCTCGGCTTTGCTTGGCTGCCTCTATTCCATGAATGGAGCGCTCAACACCTCGCCTTCTGCCGAGTTCCTATCATTGTTCTTCGCTTCTGCCACGTGAGTTCTCGGAGGAAGAGTTAGGAGTCGGCGGTGGGAATGGAAGGAGAAGCTGATCCGCACACGCGCGTATGGGGAGGTGGTACTAGCGACCTTGGCAGCCGTGGCGGGGATAGCAACGGCGATAAAACCGGACTGGTTTGAGGAAGTATTCGATGTCAGTCCAGATGTGGGTTCCGGAGCCTTCGAATGGGCGATTACCATTTGCCTCTTGCTGGCACCGCATCGTT # Right flank : CCACGGCCGGGTGATCATCCCTCAGCGGCCGTGACGACCAGCCGCATCCTCGGGGTTCCATGACCATGAAACAGGCGCTCCCTCTCGTTGCCGCTCTGGCCGTTCTCACCGGGGCCGTGGCAGCGCCACAGGCTTCTGCCGAGCCCCCTCCCCGCAAGCCGACGCTCGTGACCGCCAAGCCGTGCACCACCACGTGGGAGGTGACGGGGCGGAAGGTAGCCGTGAGGAGGCCGGCGTGGAACGACGGCCCGGTCGCGACGACCGCCAGCCCGGTACACCACTACCTGCACTGCGGAGACCGGGTGACGTGATCTTCGGTTGGGGCGGCACAGTCGCCCCAACCGAAGGCGTGCATGATCGCTGGTCAGGAGTAGTCGCCGCGTTCAGCCCGGCGCAGGATGTCGCGTTCCTGGCCGGTCTGCGTGTCGAGTGAGTCCTCGTGGTCGATGACGATGGTGTCGTCAGCCTGTTGGGCTCGCGACTGGGCCCCGTAGGCGTCT # Questionable array : NO Score: 5.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.10, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //