Array 1 4295537-4294776 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063427.1 Citrobacter sp. BDA59-3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4295536 29 100.0 32 ............................. ATTCCCAACATGGGCGGCGTTCCTCTTGTATG 4295475 29 100.0 32 ............................. GGCCAGGGCGGTATTAAAGCAGGCACCTTTGT 4295414 29 100.0 32 ............................. GAGGACACCATGCCGTTACATAAATTTGTTAT 4295353 29 100.0 32 ............................. ATCGAGTTTCCCACTCTTATAAATGATAAAGA 4295292 29 100.0 32 ............................. GCACGTAAGGATAGCTGGGTGTTGTATTTACA 4295231 29 100.0 32 ............................. TTGTTGGGAAAGTCGTTTATCGACTGATTCAG 4295170 29 100.0 32 ............................. GCATTACCAAAACGTTGCCAGAAGTGCAGATC 4295109 29 100.0 32 ............................. ATGGTAGCTGGGCGCATGTCGATGAATTATAT 4295048 29 100.0 32 ............................. TGGACCAAGGCGGTTGAAGAATACCGCCAGGC 4294987 29 100.0 32 ............................. GTGCGCACTGGACAACGACCAGAAATCAGCAC 4294926 29 100.0 32 ............................. ATCAACTGCGTTACAACTAAACTTATGGTCTT 4294865 29 100.0 32 ............................. GCCGCTTGTCGCTGGAGTTCTTCAAGTTCGCT 4294804 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCGGCGGGTGGAATAGAGCCACCCCAGCCAGCGTCAGATATGTTGCCGCCAGCAATACCGGAGCCACAATTGCTCGGCGATGGCGGGCATCGGGGGCATGGTTGATGAGTATGGTCGTTGTTGTCACGGAAAATGTTCCACCGCGCCTGCGAGGACGGCTTGCCATCTGGCTACTGGAGATCCGGGCCGGTGTATATGTTGGCGATATCTCAAAACGTGTACGGGAGATGATCTGGCAGCAGATTACACAATTGGGGGGCGTCGGAAACGTGGTAATGGCCTGGGCCACGAATACAGAGTCCGGTTTTGAGTTTCAAACCTGGGGTGAAAATAGACGTATTCCGGTAGATTTGGATGGACTGAGATTGGTTTCTTTTCTTCCTGTTTAAAATCAATAACTTATATGTTCTTTAATAAAGAGGGATTGTTATTATTATGTTGGTAGATTGTTTCGCCATAAAAAAGATAATAGAAAACAATTATATGCCTTTAGA # Right flank : TTCACTCCCTCGCCTCTAAAGTGATGCCAGCGGGGTTCCTCCGCCACATATCCCAGGTCCGTGTCCGATTCCGGACATATTCCCACGCACGGATTCTGCTATCGTATTGGCGCCATTTGGGATGGCGTTAATTTAATCACTCAGGGATATGACAATGAAAAAGATCGCGCTGGCTGCGCTGTTGATGGGTATGAGCGCCGCGTCTTATGCTGAAACCGAAATTTGCAAACAATACTTCACGGAAATGGACAGCTTTATTAAAGAAGCGTCAAAACATGAAGAGGCAAAAGCCCAGGTGGAGACGCTGAAAACCCAGTTAACGGAAGGCAGAAAACAGCTTGAAAGCTACCCGGTTGAGCAACAGGATGCAGGCTGTAAGCAAGGCCTGGAAGCAATGAAACAACTGAACGCAGCGATGGGTATCAAAAAATAACAAAAAGGGAGCCGATGCTCCCTTTTTTAGTTTTTACGAACGGCAGATTTACTTTGTCCCCGCCTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4305586-4304823 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063427.1 Citrobacter sp. BDA59-3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 4305585 29 100.0 32 ............................. CGATCTCTATTGTTATATCTCTTCCAAAGGCT 4305524 29 100.0 32 ............................. CGGAAGGTTCTGTTGGAGTGGTTGGTGCAGGA 4305463 29 100.0 32 ............................. GACTTCTCAAGCAATCAAATCGTACCGAAAAA 4305402 29 100.0 32 ............................. GATGGCGGCAAGGCTGAGAAAGCGGTCCGCGC 4305341 29 100.0 32 ............................. ACTGTACCTGAGTTTACGAAGGCGATGGAGCA 4305280 29 100.0 32 ............................. TTGCTTGCTGTAATAGGTTTTATCGCAACAAA 4305219 29 100.0 32 ............................. GTACTGGAGGTGCATTTGCATGGTCTATCGCA 4305158 29 100.0 32 ............................. TTACCGGCACGATCCTGCTGATAAACCATCGG 4305097 29 100.0 32 ............................. TGTTTGGCGCAAAAGCAGTAAAAGTTCCTGAA 4305036 29 96.6 32 ............................T TGGCCCTGCAGGTTGACATGTCGTACACGGCA 4304975 29 100.0 34 ............................. CTACCCCCAGCCTTAAAAAATGCTGGCCCTTGTC 4304912 29 100.0 32 ............................. CTGGTAGCAGTGACTGAGCAGCGCGACGCATT 4304851 29 86.2 0 ............C............CT.T | ========== ====== ====== ====== ============================= ================================== ================== 13 29 98.7 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : GGACATGGTTTGCAGGCCTGCGTCGTGAGCAGTCCAGTAGCCGTGCCAACCTGCCGGTGCTGGATATTCAGCGCGGTGTTTTCAAAGTGCTGCCGATCATCGACTGGGATAACCGGACGGTGTATCAGTACCTGCAAAAACACGGCCTGAAATATCATCCGCTATGGGATGAAGGCTATCTGTCTGTGGGCGATACGCACACCACCCGTAAATGGGAACCGGGCATGGCAGAAGAGGACACCCGCTTCTTCGGCCTGAAACGCGAGTGCGGACTGCACGAAGGCTGATTTTTGGCTTTTCAATAAATAGATAAGACAAGCGCCCGGCTAACTACCGGGCGTTTTTTTATGGGTTATACGTTGGTGAAATGAGAGTTTGTACGTGGCGTGGTTTTCTTTAATAAGTAAAATCAAAGAATTACCGATCTTAAAAAATACGGAAATGTTGGTAGAATTTTGGGAGTGGTAATTACTGTTTAAATTTAATGAGTTACGTTTAGA # Right flank : TTATGCCCGATAAAAATAGCTCGTTATCATTAATATTTTCTTTATGGGCAGATATTATCCGACGGTTTCATTGCATCTCTATAAACTAAGAAAGTTATAATAGATACTGAACTTATAAGAGATATTGCCTGTTAAATCATTTTCATGGTAACAAATACAAAATTTATATATGTAACCTTCTGGTGATTTAAATCACAAAATATACTTTATAAAAAGCGCAGTATGTATCGATAACAGTTGGATAAGGGACATCGCTTGACAATATTTAATTATTGGGGGAAGACCAGTCGAGGAAATAAAAATGGTGGAGATGAATACCACTTGTTGTGCTGGCACTCATTGGATGTTGCTGCTGTTGGTTACTGGATGGTGCAATGCAATGTCTATGGCGCTGCTGATTATCTTCAAAAAGTAGGACTCCATGATAAGAACAAGGCCGCGCAGTTTTTTGCCTGGTTATTATGCTGGCATGATATCGGAAAATTCGCCCACTCTTTTCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4311371-4310854 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063427.1 Citrobacter sp. BDA59-3 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4311370 29 100.0 32 ............................. CCACCGATCCTATTCTGGTGGTTCCTACCATG 4311309 29 100.0 32 ............................. CTCCGGAGCACCAAAAAAAGAACGAGAATTTA 4311248 29 100.0 32 ............................. CTACAATCTCACCAGTTTGTTGAATCGGCAAC 4311187 29 100.0 32 ............................. CAATTCATCAAACCAGCCGATTTTCCGCGCGC 4311126 29 100.0 32 ............................. TCAAATGTACTATCTGGAATGCGGCCCGCCTG 4311065 29 100.0 32 ............................. GACGCCAAATCGCTGGCCGGGCATATCAAAGA 4311004 29 100.0 32 ............................. GAAATGACGCAATACGGCCACGTAAACGGCGA 4310943 29 89.7 32 A...........T........C....... AATAGGTTGCATTGCATGAGTCTTTTGCCAGG 4310882 29 79.3 0 .........A...C..T.........TAA | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.6 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACATCCTCCAGCAGGCGCTGGAGCGCGCCGATGAGATCAAACACCCGGTTGGACGTACCCGAGACATTGAGGCGCTTGATGAGCTACTGACGCAACTGACCGATGACAAGCACCGGGTCATTGCACTGCAGCCTATCAGCCAAAAAGAAGACGCCACCCGCTTGTGTATTGAAACCTGTATCGCCCGCAACTGGCGACTGTCGATGCAAACGCATAAGTATCTGAATATTGCCTGATTCGGTTTCTGCCGGTGTTATTGCACCGGCAAGACAGGTATTACCTGAGCCGCCCGGCCTTATGGCCGGGCGTTTTCGTTTACCTGCCCGGCGGACAGGATATAGGTTTGTGAAACAACGCTGTTCGGTAAAATCAGCTTTTGCCTGCGGTGTGTTTTTATTTTGATTAATACTCAATGGGTTAATGATTCAGCTTGCGTCGATAAAATCGGTAGAATTTGAGCTGTGATAAATGATTCTATAATTCAATGGGTTATATTTAGA # Right flank : CCATAACGGAAAGGAAACAGGCTTACGCAGGCGCTGACGACACAGAAGCGAAATTACTCGCCGCGGTAGATACACCCTGCGGTACAGGTCTCTTTGATCATCACGGCGCTCAGCAGCGGAACGACGGGTTTCAACTGATCCCAAATCCATTTTGCCAGTACTTCGCTGGTCGGGTTCTCAAGGCCAGGAATATCATTAAGATAGTAGTGATCCAGACGATCATAGGTCGGTTTGAACGCCGCCTTAAGCTCAGCAAAATCCATGATCCAGCCCGTATGCGGATCCACCTCGCCGGTGATCTCCAGACGCACCATAAATGAGTGACCATGAAGACGACCGCATTTATGCCCGGCTGGAACATGTGGCAAACGGTGAGCGGCTTCAAACATGAAATCTTTAAATAACGTGGTGGACATTCTGAACTCTCTGACTGGCTAGAAAAACCGCGGCATGGTAGCCGAAATGACCTTTTTTATCATTAACTAAAATCGGCAAAAGCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //