Array 1 29767-27542 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSGY01000042.1 Vibrio cholerae strain N2767 NODE_188, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 29766 28 100.0 33 ............................ TTTAAATGATTTAGACGTCCTAGTCATATTGAG 29705 28 100.0 33 ............................ TAACATTCCTCAGCACAAGCTCTAATTGCTGTA 29644 28 100.0 33 ............................ TAAGCCAAAGGAATTTAAGTTTAACATACCAAG 29583 28 100.0 33 ............................ TCAGAAAAAGGCTCTTGCTCTCGTCTCGGTTTA 29522 28 100.0 33 ............................ TGAAAGAAGCTTTTTAAATTCCTTTGTTTTTTC 29461 28 100.0 33 ............................ TACTGTTATTCCCGACCCTAGCGCTGACCCAGA 29400 28 100.0 33 ............................ TAAGTGTTGTTAGCCGTTGCAGGCCATCAATAA 29339 28 100.0 33 ............................ TGCGGTGGGGCTGGGTACATTAAGCCAACAAGA 29278 28 100.0 33 ............................ TCAATCTCTCTCGCTCAAGGTCGGGAGTCGCTG 29217 28 100.0 33 ............................ TTGTAGATGAAAAGCTGAATATTTTTACAGTGA 29156 28 100.0 33 ............................ CAGCAAAGGAAGCTACAGGGACGCACTAGAGCA 29095 28 100.0 33 ............................ CTAGGGCAAGGCTTACCCCAATCCCTCAGCTTT 29034 28 100.0 33 ............................ TGGCATTAATCACTTCCTCATCCGTTGGAAGCT 28973 28 100.0 33 ............................ TGTATCTGCGAGCAGACTCGTAATTGAGGCCAT 28912 28 100.0 33 ............................ CGAATGTCGCGCAGTCCCCCGCCTGCTCACCCG 28851 28 100.0 33 ............................ CAATCTTTTTATTCTGTTTTGTGATTAAAACTA 28790 28 100.0 33 ............................ CTTATCAGCCACTATAAACTCAGTTTTTATCAG 28729 28 100.0 33 ............................ CAAGTGTGTGTTTAGGCATTGTTTAGCTCTCCT 28668 28 100.0 33 ............................ TAATGTCGGCTACCTCCCTGTTTGTGAGCGCAG 28607 28 100.0 33 ............................ CGGCGCGAGCTTGTTCAAGTCGGCTTTGTTGTT 28546 28 100.0 33 ............................ CTATCTCGGCTTTCTTGGCCTACCTCTTGTATT 28485 28 100.0 33 ............................ CAGCTTTTACCACATCATGACTATTGACTCTTG 28424 28 100.0 33 ............................ TGAATTTGCTCCATCGTCAAACGCTGCGCTCGA 28363 28 100.0 33 ............................ CGCTAAGAACGTGGAAATGTTCTTGATATGCCA 28302 28 100.0 33 ............................ TATGGAATATGCCAAAATCGATGCGTCCCACCT 28241 28 100.0 33 ............................ TCGGCAAGCAGCTTATGAGCATTTTACCCGATC 28180 28 100.0 33 ............................ CCAAGTTTAGACATACCTTTTGATTGTCCACTT 28119 28 100.0 33 ............................ TACAGCTTGGTATCTAGACAACATTGTTCCTGC 28058 28 100.0 33 ............................ TACGAGTCCATTCATACCATGACGGGTGATATC 27997 28 100.0 33 ............................ CAAAGCGCGGTCACCTTAAGCCGACTTAATGAG 27936 28 100.0 33 ............................ CGGCGTTAAACAGGGTGATAAGTACACTGATGC 27875 28 100.0 33 ............................ CCAAATGAGCAACAGCCAGTTGCAAGCGATACT 27814 28 100.0 33 ............................ TTTGGGCTTTCTGGCTAACGGCAACGCAATTGA 27753 28 100.0 33 ............................ TTGTTATCAACTTGCCGGATAAAACGGACAATA 27692 28 100.0 33 ............................ CAGAGAGTATTGACGAGCAAGGTCAGCCACTTC 27631 28 100.0 33 ............................ CTCTTTAATCGAATTCCATAACGGTGACGTTAA T [27610] 27569 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================= ================== 37 28 99.2 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACACGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATCTGTTACAACAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : GTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATGGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTAGCTATAAACCTAAACCAGAGGGGATTTGTGACAACAGCTACGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGACTGCGTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.40,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14348-15815 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSGY01000037.1 Vibrio cholerae strain N2767 NODE_133, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 14348 28 100.0 32 ............................ TTATCTCTTTTCCGGTGTGACGCCCAGCATGA 14408 28 100.0 32 ............................ TGAATTGAAAGCGACCGTTATCAAGACGTTTC 14468 28 100.0 32 ............................ GTGGTGGCGATGCGTCTCAAATCGAGCAACAG 14528 28 100.0 32 ............................ TTTACACCTGACCAGTTTTCACAACTTCTTGA 14588 28 100.0 32 ............................ TCAACGCTAATCGCATTGCCCTCAGTGCCTGT 14648 28 100.0 32 ............................ TGGCGGGGCGGACGGCTGCACACTCTGCCCAA 14708 28 100.0 32 ............................ TAAGTGCGGAAGCTCTGGCGCGGTGCTGCACA 14768 28 100.0 32 ............................ ATTTGGCAGGAACCTGCCCCGCTTTATCTGAC 14828 28 100.0 32 ............................ TCAGTATCATCCTGACCCCGGTTGGTTCCCTT 14888 28 100.0 32 ............................ AGGTAAACCAGTCCGTAAGTAAATCATTATGC 14948 28 100.0 32 ............................ TAAACAGGAATCGGATAAGCAGCCAGAACAGC 15008 28 100.0 32 ............................ GCCGTCCGGCATTTTTTTGTAAACGCCAAACG 15068 28 100.0 32 ............................ TTATCGACAAGCACACGCCGTTATACCTGCAT 15128 28 100.0 32 ............................ AATAGAAGCTAATAGAGCCTTGCTGTTTTCAG 15188 28 100.0 32 ............................ GTTTGGTTATTTCAGCTTTGGCGGTGGTTCCT 15248 28 100.0 32 ............................ AGTGGAGGTGAGTTACACAACAGCAGGGGACA 15308 28 100.0 32 ............................ AAATGAGCAAGCCACATCATAATCGAGCATCA 15368 28 100.0 32 ............................ TACAGTCATTATTTGGTTAAGGGAGTGATTAT 15428 28 100.0 32 ............................ ATTTGGAAATGCATGTCCTGATGCATCTACGT 15488 28 100.0 32 ............................ AGTCGGCGATATAGCGGATTTAAAAAGCTTTA 15548 28 100.0 32 ............................ AGAGCAAAAACCCCTGCAAGGTGCGCTATCCG 15608 28 100.0 32 ............................ AAGTAGCCCTGCTGGGTTAGCCTCTCGGCCAT 15668 28 100.0 32 ............................ ATTCCGGCGCCTCTTCTGGCAATGAGCGAACT 15728 28 100.0 32 ............................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 15788 28 85.7 0 ..........AT.............TT. | ========== ====== ====== ====== ============================ ================================ ================== 25 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATGTAACTTACGTAAGCTTTGTACGCAAGCTGGTGAAATCACCCGAGCGAATAGAGCGCGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCGCTGGTGGAATGTTTAGCAGCTTTGCAACAAAGCAAGCCGACAGCGTTGTGTACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAATTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTGGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTATAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //