Array 1 159895-159133 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCQZ01000036.1 Salinibacter altiplanensis strain LL19 NODE_55_length_195851_cov_165.296783, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 159894 28 100.0 33 ............................ CCCAAGCAAGCTCGACGATGAGATCCTGATCAC 159833 28 100.0 33 ............................ CTGGGAATGGACGCCAACCTGGAACAGATCGTG 159772 28 100.0 33 ............................ TCCATCCTTGATAGGTATCAGCAGGCGGTCAGG 159711 28 100.0 33 ............................ TGTAGGGGTTGGGTCAGTTATTTGACTGTCAAA 159650 28 100.0 33 ............................ CAGGATGCCGACTCCGCACCCGCGCATAATGCG 159589 28 100.0 33 ............................ CACACTCACCCCGAAAGCAGGGTGTATGGAGAA 159528 28 100.0 33 ............................ CGAGCTGAGGGTTCCTTAACGGACCTACAGGGA 159467 28 100.0 33 ............................ TTTCTTTGATGCCCTCATTGTACGCACGTCTGA 159406 28 100.0 33 ............................ TGATGTGGGCGCTGCCGCTCCATCCGTTTCCAA 159345 28 100.0 33 ............................ GCAAGAGAGTAGTCCAGTAGAAAGTGCATCGGA 159284 28 100.0 33 ............................ CCGGGCGATTCGAGACTGTGGGGCGGCGGACCC 159223 28 100.0 33 ............................ TGTCGCCGAGAACCGCGTCGTTGTCGTCCGCTT 159162 28 85.7 0 ..............G........T..TG | T,A [159138,159143] ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.9 33 GGTAGCCCCGCACTCGCGGGGATAGACC # Left flank : GTACGTCGCCCCCACCATGAAGAAGTCCGTCCGCGAGCGGGTGTGGCGCGTGATGATGGACTGGAACGAGCTGCTGCCCGACGACGCGGGCGTGGTCTTCTTCTGGCGCAACCCCGACGCCCCGTCCAAGCTGAGCATTCGCCTCTTGGGCTGGCCGAAGAAGGAATTTGTGGAGCACGAGGGCCTGTGGCTCACGCACCGCGACCTGACGGAGGCGCACGACGTGGAAGAGCTGCTGGAGCAGGGCGAGGTGGAGGAGCCATCCATCGACGAGGACGACCCGACGCTGCCGATGCTGGAGGCGGTCGAGGCTCCGTGACGACCCCCGATTCGTTCCTTGACATTGCGATTCTTGAGAATGCCGCCTATGCTTGCCCCACGGCGGGCAAGGCCGTGGCACAGCGCAGTTTTGATTCTCCCTGCGACAGACTGTCGCCTTTTTGGCGCGATACACGGAGCGAAGGGCCCGTAGCGCCCTGGTCCTGACAAACTGTAGCAGG # Right flank : CGAGCACGCCCATTCTCGGGGCGGGTGCGGGCACCGGCATTTCCACCAAGTTTGCCGAGCGAGGGGGCATCGTCCGGGACGGCCGACGACGGCAGCGAGCACAGACGGTGTGTCTACGCTCCGGCGTCCGGACTATGCCTCGCCCAGCGCCGCGGTCACCTCATCGGCCGCCTCCTTCAGCACCACCGCCGACCGGAGCGACAGGTCGCTCTCATCGAGGAGCCGCTTCCCCTCCACGGCGTTGGTGCCCTGCAGCCGCACGATCAGGGGCACGCTGATGTCAATGTTCTTGGCCGCCTCGAGGACGCCCTGGGCCACGCGGTCGCAGCGCACAATGCCGCCGAAGATGTTGAGGAGGACAGCGTCCACGTTTGGGTCCTCCAGGATAATGCGGAAGCCCGCCTCCACCGTCTCGGCGCTCGCCGCCCCGCCCACGTCGAGAAAGTTAGCAGGCTCCCCACCGGCCAGTTTGATGATGTCCATCGTCGCCATGGCCAGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTAGCCCCGCACTCGCGGGGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 172513-171631 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCQZ01000036.1 Salinibacter altiplanensis strain LL19 NODE_55_length_195851_cov_165.296783, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 172512 28 100.0 33 ............................ CAGATGTACGCGCAAGGATGGAGCGTTCTTTGG 172451 28 100.0 33 ............................ CTCCCTCGCCAATGTCGTCACACAGTTCGGTGC 172390 28 100.0 33 ............................ CAGGAGACGCTTGGACCGGGCCAGGTCCTCGTC 172329 28 100.0 33 ............................ CCCGCCGAAGAAGAGGCCGATAACTCCCAAGGC 172268 28 100.0 33 ............................ TCTTATAACTGCCGATCTGTACGGCAGCTTTGC 172207 28 100.0 33 ............................ CGTGGACTCGATTTTGTCGGCTAGTTCCTGTTC 172146 28 100.0 33 ............................ TCATACGGGAAGAATTTAATAGGCAAGCCAGCT 172085 28 100.0 33 ............................ TTCGGAGAAAGAAACAAGACCCCCTGATGCAAG 172024 28 100.0 33 ............................ CAGTTCGATTGTATCCTCTTCAAAGGGACCGTT 171963 28 100.0 33 ............................ CTGTCCACTTTCCGCTAGTATCATTTCAAGGGC 171902 28 100.0 33 ............................ TCTCATCGGCTACGACCAGAAACCCGCTGTCTC 171841 28 100.0 33 ............................ CTGACATGCCGATCCGCTTCTACACGACCGATG 171780 28 100.0 33 ............................ TTAAAGAGGGTGCAGAAGCGGGAGGGGGCGACG 171719 28 100.0 33 ............................ TTGGGCCGCTACGATGTCTCCCATAAGTCTAGT 171658 28 92.9 0 .......................C..T. | ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.5 33 GGTAACTCCGCACACGCGGAGATAGACC # Left flank : CACGAACGAACGCGGACCGCGCTTCGTGAGCCCTGTGCGTGCGCACCCTTCGTGGAGTCGACGTCCCGACGATCCCTGCACGGGCGACAGGAACCCATCGGCAGGCCTCTTGCGGGACCACACAGATGCATCGAGGCATTCCAGAAGCAGCTCTGGTGCGTCCTGTCTCAAAGCTGATCGCAGGCTCTCGCCTGGACGTGCGCAAGTCACGTTGCGGGTCCGTGCGGGGCGGGTTGCCCCACCAGGCATCTTCTGGCTTCGTCCCGAAAGAGAAGTCCTCAAGCAGACCGGGGAGTGTCCACAGAAAGAGTGCGAAAGGCTCAGTCCCACGCGGTATCAAAAGGCCCGTGAGGCTCAACGCAGCGAATCACGGTCAAGCCGGAAGGGCCCGCGAACCGCTCGGGGACGAAGCAGGTCCCCTGCCAAAATGGCTCACACACACCTTGTCTCGTACCGCAATTTGCATTATTCCCTACCCAGTTGCGACATATTGTAGCAGG # Right flank : AATCGAAGGAGAACGGCGTTTTGCTTCGAACCAATCCCCAGTGATCCTCGCCAATCTCCGATGGGCCTGCCAATTCCTCGCCAATGAGCCAGTGGACGGACCGTCCCCTCCGCACAGCGTCGCTGGTCTTCTTCGACCTGGAGACGACCGCCCTGCGCCCGGACCGTGGCGGGCGCATCTACGAGATGGCCGTGGTGGACCCGCAGGGCGTCCGGTTCGACTGGTGCAGCGACGAGGCCCCGCCCCGCGACGACGTCGTAGCAACGCAGCTGCCCCGTCTCCTCAATCACCTCGAAGCGGGCATCGTCGTGGGGCACAACCTGGAGTTCGATTTCCGCTTCCTCACCTACGAGGCCGAGCGCCTCGGCTGTGGCGGCCTCGACCTCCGCTTCGCCGACACACTGGGGTTGGCCCGGGCGCTCCTCAACGCCCCGGACGACTACCAGCTCGGAACCCTGCTCGGCCATTTCGACGCGGCCCCGGACGAGGAGCTGCACACG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTAACTCCGCACACGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 584-1037 **** Predicted by CRISPRDetect 2.4 *** >NZ_NCQZ01000003.1 Salinibacter altiplanensis strain LL19 NODE_5_length_12885_cov_186.778961, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 584 28 100.0 33 ............................ CCCATACTTCATGCCAACTATCGCTAGTCGGAG 645 28 100.0 33 ............................ TCACTTTGGCCTTCAGCTGTGATAAGGCAGAGA 706 28 100.0 33 ............................ CGAGTCTTCATCATCCTCGGCCCGCTCCACCTT 767 28 100.0 33 ............................ TTCGGTTGGCGATCTTCCCGACCAGATCAATGA 828 27 85.7 33 ......C...T....T.-.......... GTTCTAGAACATTATGACGGCCTTCAGCTAACG 888 28 75.0 33 ...GA.C....AT.C.......C..... CCAGCCGTAGTCGTAGCCGTCCGAGGACTCGTC 949 28 78.6 33 ......C.T.TA....T........A.. CTACGCCGCTGCGATCCGGCACAAGCACCGCGC 1010 28 71.4 0 ....A.C...TA..CA..A......A.. | ========== ====== ====== ====== ============================ ================================= ================== 8 28 88.8 33 GGTAGCTCCGCGCATGCGGGGATAGTCC # Left flank : TCTGCACCAGTGGGTCCACGGCGCGTTTCGGCACATGGTGACCTACAAGGCGGAGCTTGCCGGGATGGAGGTGATGCTTGAGCCGGAGCCTTACACCACGAAAACGTGCCCGTCGTGTGGCACAAAAAATCCGACGAGGGGCCGGAAGTACAGGTGCTCCTCGTGCCAGGCGGCTTTTCACCGTGATGAGGTGGGGGCGCTTAATATTCGACAGAAGTATCTGGACGGAGACGGGTGGCGAGAAGGCTACCTGTCGAGCCCAGTAGTTGCCGGTCAGGGCTTTACGGCTGCGCCTCCTGAAACACCGGAAGAAACGGAAGCGCATAGCTCGGTTAGAGGCGGTAAGACCGAGCCTCGCCCGTTTGCGTCGGGCGAGGCTGCGGCACCCTCAGCGACCCGAGAAGCCCCGCAGAAGCGGGTCACGAAGCACCCTGTTGGGATCCGGTACAGACCGCACATGAATTGCGGAGACGGCGGGTCCCCTGCCATTTCGGCGCAGG # Right flank : CCAGGCGTGGTGGCTTGCGACGGGTCTGGGCCCAGCGAGCCAGATGCTTTGGAGTGGGACGGCACCTATCGCAGAGATGCAACCGTCTATGCGTTTGAGGGAAATGAGATAGACACGGCCGAGGGCAGTGTGATACTCGACGTCGCGCTGGCCGACGCAAAAGCCCTCGACTCGGTCATGGTAGACGTAGAGTACGAGGGCGGGAGCATGAGGGAGGAGAGCGACTGAGCAAAGCCCCTTACTCCCACTCGCATTGTCACCCGCGAGGTCTCTTCGGTTCTGGGATCGCTTACAATTAAGAGCCGCACGCGCCTCTAGCGATCCGGCGATGCAGTAACAGGAGAAACGAGGCTGTGCTACACAGACGACGAGGAAGAGGTGTGGTCGGACTCAACGATTGTGGAGTTCACTGCTGATTAAGTATAGTTCTCTCCCTTCAAGGGACACTTCCCGCTCGATGCGGGATCCATCAAATAGAGATAGCCGGCAGCCAAAATGGC # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.44, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTAGCTCCGCGCATGCGGGGATAGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //