Array 1 1156477-1157040 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024601.1 Porphyromonas gingivalis strain KCOM 2799 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1156477 36 100.0 30 .................................... ATGGAGACCTTTTGTTATAAAAATTATACA 1156543 36 100.0 30 .................................... ATAAAATCATGGCAAAACAAATTAAAGAAG 1156609 36 100.0 30 .................................... AACAACTCAAAACTTTGAATTTTTTGGTTT 1156675 36 100.0 30 .................................... GGAGGAGCTATTGAGGCGGTGTGACATCAA 1156741 36 100.0 30 .................................... TACGCAGAGTGTAAGCTGAAACATAACCTG 1156807 36 100.0 30 .................................... TACGCAGAGTGTAAGCTGAAACATAACCTG 1156873 36 100.0 30 .................................... GAAGAAACGATGAACCCAGAAGTACTCGCA 1156939 36 100.0 30 .................................... CTCTGAGTGCCAAGCCTATATGATAGCGTA 1157005 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : ATATATCGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGCGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGGCAGCTCAAAAGGCCTTTAGGGGAGGTAAATAAAGAGGCACCCACCGAGTTCGTGCAGGAACTCGGTGGGTGCCTCATCTATTCGAAGGGGTACGAAACGGCTCTCAGGCTCTACCGCTCATACAGCAGGTTTGTATCAGCCATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGGAAGAGAAGAATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCACTCCCCGGTACAAATTCACCGAAGAGGGGAGCAGCTTGTCCACCTGCAAATGTAGCGAAAAAGCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTCCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 2219867-2221809 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024601.1 Porphyromonas gingivalis strain KCOM 2799 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 2219867 46 100.0 29 .............................................. CTGTCCCCGGATTGAGACTTACCTACGAG 2219942 46 100.0 30 .............................................. ACAAAAAATGTTTTCTACTCATTTGAAGAA 2220018 46 100.0 30 .............................................. TCCATGATTTCCTGCGTGCGCACCGGAAGC 2220094 46 100.0 29 .............................................. GCAAGGTGTGCAGTACTATAAGATTGACT 2220169 46 100.0 29 .............................................. AACGTGTTTATAACAATCGAACGCCTGAA 2220244 46 100.0 30 .............................................. TCTTTTGACTTGACGCGCAACCGCTCAAAA 2220320 46 100.0 30 .............................................. AGCAAAAGCGTAAAAGCTTTTGAGAAAAGA 2220396 46 100.0 30 .............................................. TTTTGCGGCATGCTGCCTTATGATGGGTTC 2220472 46 100.0 30 .............................................. TCGCTTAGTCCCTTCTTCCATCACCCTTGC 2220548 46 100.0 30 .............................................. TGCTATGCATATCAGACGCTCACATAAAGA 2220624 46 100.0 30 .............................................. AATTGCGAAGCGGTTCTTTCGTAATTACGT 2220700 46 100.0 30 .............................................. ATCCCATTTCTTGCATCCGCGGTTGTCGCT 2220776 46 100.0 30 .............................................. GATGACGCCGCTATAAAGCGGCTGGAGCAC 2220852 46 100.0 30 .............................................. GTAAGAAATATGAAGTCTTTGAGTTGGACA 2220928 46 100.0 30 .............................................. GTAAGAAATATGAAGTCTTTGAGTTGGACA 2221004 46 100.0 30 .............................................. TGAGAGTCATTCGGATTGTCTAACAGCACC 2221080 46 100.0 30 .............................................. TGAGAGTCATTCGGATTGTCTAACAGCACC 2221156 46 100.0 30 .............................................. TCCCGAGCCGGATTCTTGATGAGTTCCGCG 2221232 46 100.0 30 .............................................. GGGTGCAAGACAATAGGACTTACAGCTACA 2221308 46 100.0 30 .............................................. GTTCAGCTTTACAAACTGCCACGCAAGGCA 2221384 46 100.0 30 .............................................. CGTTGCAAGACTTGTCTTCCCCTGACTGCT 2221460 46 100.0 30 .............................................. TGGATAGTCCCGTTAAATCCGTTCTCGTTC 2221536 46 100.0 30 .............................................. TCCGATGTGCACGCCGTTAAGGAACAAGTT 2221612 46 100.0 30 .............................................. AGCGAACAGGATGGCATTTTCGCAGGCAGC 2221688 46 100.0 30 .............................................. ATGGTGCTCAAAGAGTACGATATCCGCAAC 2221764 46 93.5 0 .................C.T.......................T.. | ========== ====== ====== ====== ============================================== ============================== ================== 26 46 99.8 30 GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Left flank : ATGAGTCATTACAGATCCAGATATTCAGCCTATAGAAGTATGTGGGTAATGGTATTCTTCGATCTACCTACGGAAACTGCAGCCGACAGGAAACGTGCAGCAATCTTTCGGAAAAATCTGATTAAAGATGGTTTCGAGATGTTCCAATTTTCTATCTATATCAGACACTGTGCAAGTAGAGAGAATGCAGAAACACATTGCCGACGGGTCCGTTCTGCTATTCCTGAAAAGGGCAAAATAGGTTTGATGACAATCACAGACAAACAATTTTCAGCCATGGAGATCATTTGTGGGAAAGGAAGAGAGTATTATCAGCCACCCCTCCAGCTTGAACTTTTTTAAATATATTCTATCATCTTTTGTGGAATTAGTGCTTTTCGTCTGGGGCATAGAAATTAAAAAGCCGAGAGAAATCTCGGCTTTTCAGCTACGCACAGTTGTTTTTTTCTTACTCACAATCACCCTCTATGTCCTGTATTACAGGTGATTACGGGGATTCT # Right flank : TGAAAAAAGGGAGACCACGAAAATAATAATCTGCTCAAAAATCATGCGCCAAAAAAGTTTTCAACAACGAAGACGAGTTTGGAACGATTCCAAATAAGTATCTGTAGAGAGGAGAAAAGCAAGGGAAAAGTGCAGGGAAAAGGAACTGCCATAGATCGAAATTCCACTTAAAACAAGTCGGACAACAATCTGTATATAAAGCGTTTTCAATTTGTATACAAATCGTTTTCATTTTATATATAAATCGTTTTTGATAAATATATAGATCGTAAGTGATTTGTATATAAATCGCGGGCTCAAAAAGCCTTTTCCGAAGCTGATATAAAAGAAGCACCCGCCGAGTTCTACGGAGAACTCCGACGGGTGCAATCCGGATATGTATGTGGTGGGGCCTATGCCAAGATGCTATCCTTTTGCATGTGATTCGATGTAGCTGCACGATTCCCCTCTGCAGTCTCGGACCGGATCGAGGACTGTCGCTGCTGTGCTGAGGGATCCGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //