Array 1 57055-57350 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOKV01000001.1 Azospirillum brasilense strain ATCC 49958 NODE_1_length_918938_cov_61.614123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 57055 32 100.0 35 ................................ GTCTACACGCTGGTCGGCTTCGACAAGAACGAGAC 57122 32 100.0 34 ................................ TGACCCAGTACAAGGACCGGTCCATCGGCCAACC 57188 32 96.9 33 .............T.................. ATGCACGCCTGGATGGTCGCGGCGATGTCGTCG 57253 32 90.6 34 ....T.....A.C................... TGATGCAGCACATCCGGAAAGCGGCACATGAGAT 57319 32 90.6 0 ..........A.A..................C | ========== ====== ====== ====== ================================ =================================== ================== 5 32 95.6 34 GTTGCTCCTTGCGCGGGAGCGTGGATCGAAAT # Left flank : GACGGCGCTCGAACACATGTTCGACCATGACCGCTCCGCAAGTCGCGGCGAAATGGCCAGCCGTCGATTGGTTTTGTTCCGCCACGACAGCGCACTCGGCAATGCGCCGGCCTCGGCATTGTTCCGGCGCGTCACCGTCAAACGTTATTTTGAAGGAGCTTCCTATGACCTGACGAGCGCTGACTTGCGCCGGCTGGCACCAGCCCGTCGTTTTGAGGACTATGCAATCAGCGTGGACCATACGGCCCTGCCGGCCGGAATTACGATCATCGAAAAGTTCTGATTGGGCTGTCTGGCGATGCAGAGTTGTCGCCGTGTACAACTGCGCGAACCCGAAGCGCTCACGCAAGGTGGATGGGTTTGTGGGTAGGTATATGCGTTGTTTGTCAATGGATTATCCTTGTGGGTTGCGGACGATTCCAAAATCTTCGTGTCGGTCGCAAGCGGTTCGCGTAAGTGACGGTATTTTGTCTTACCTACCAGCCCCTTAAGAGAAGACA # Right flank : CACGGGATGCAGCAGCATATGGCTGATGAACTTGTCGTCAGGGCTTCGCAGGAGCGTGGATCGAAACAGCTCTTCAAGTCGGTCAATCCAATCACCGGCGTATTGCCCAAATGGAGATATCATAGAAACAAGCGCTCTAAGTTTATGCGCATCAATGGCAAAAATTAAAAGGTGCGGGGTCGCGTTGGTTAACTCGTGTACTGGGGGAAACTCATGGCCGCCATACCGCTCAAGTTCCAGTCTGGGGATGCGCTTGCATTCCGCAACGCCACAGGCGCTACAGAGCTATGGGGTGTCGTAGAGCGCAAGCGCGGTGGCTACTTGCTCAGGTCCTTCAATGGTTCTGACCAGAGGACCTGGAGCGATGACGAGATCGATAGTGCTTACGGAGCGCGCCGGCTTATCCATTACCCATGCAACGTTCAAGGGTTGCCGAAAAGCATAGCAGATGTTCTCGAGAAAACTTGGGAATACTGGCCCGAAGAGGTAAGGCGACATGC # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCTCCTTGCGCGGGAGCGTGGATCGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 11815-12312 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOKV01000009.1 Azospirillum brasilense strain ATCC 49958 NODE_9_length_240061_cov_66.024194, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 11815 36 100.0 30 .................................... TAGCCCTGGTCGACCGCCAGCACGTCGACG 11881 36 100.0 30 .................................... TCCAGCCGGTTGCGCGTCCCACCGCCGACG 11947 36 100.0 30 .................................... CATCCCACTGAGGGGCCTCACGGGTCAGGA 12013 36 100.0 30 .................................... AGCCGGGCTCTGGTGGTCGAATGCCGGTCA 12079 36 100.0 30 .................................... GACGCGGGCGCGCAGCGGCGGGTTGTAGTT 12145 36 100.0 30 .................................... TGGTGGTGAGCGCGCCAGGAGGACGCTGAA 12211 36 100.0 29 .................................... CGCCGCGGCGTCCATGCCGATCGTGATCG 12277 36 88.9 0 .............A...G.C..........T..... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 98.6 30 AGTGTAGCCGATGGGAAACTGAGGTCCAGCCGCAAC # Left flank : AGGCGTGGGCGCCGATGCCGCTGGAGTGGCCGGCGCCTCCGAAGGTGCCGCAACCGGCGTGACGGGGCAGGTTCACAGAGAGGCGATCAGGCGGCGTCGATGCTGAGCGGGTACCGGATCATGTGGATGATGGTTCTGTTCGACTTGCCGGTGCTGACTAAACGCGAGCGCAAGGCCGCCACGACCTTCCGCAAGTTCCTGCTCGACCAGGGTTTCGAGATGTCGCAGTTTTCCGTCTACCTGCGCCACTGCGTGGGCAAGGAGCAGGCGGAGGCGCTGACCCGGCGAATCGAGAAGGCCATTCCGCCCACCGGAAAGGTGCATATCGTCTTCATCACGGACAAGCAGTATGAAACCATCCTGTGCTTCGACGGCCGCGTACGTCAGCCATCCCGGAAGAATCCGGAGCAATATGTGCTGTTCTGACCCGCGCGAAGAGGGATTCCATATCGAAAAAGGGCGGGATAAGGCTGCCTTTTCAGTGCCTTATCCCGCCCCCA # Right flank : CGACACCGAAGCTGGCTGCTTGGCACCGTCAACTTGTTGGTAGCCGGGCGGAGCGAAGCCTGATTTGGCCGGGAGGCTGATGGCGCTCCGGTGATCACGCCGCCAGCGGCGCGCCGGCGACCTCGGCCCGGACCTGAATCTCAAAGACCTCCGGTTGCGGTGCAATCCACCGCAGCCGGGTGTCTCATTGAACCGTGCCACGCCCCGATGAACGCCCAACACTCAACCCGCCCCGCCGAGCACGAAATTCCGGACACTTCCGTGGCGATCACCGGGCCTCACCCTCGATCCTGCCGGCAGGCTCACAAACGGAGGCGTCCTTCCCGTCGGGTCCCTGAAGATCGCCGTCGATACGGCGCCACAGGTTCAGCGGGTTGCCATCCTGAACCGCCTCGGGCAGCAGCGCCGCCGGAACATCCTGGTAACAGACGGGCCGCAGGAAGCGGCGGATCGCCAGGGTCCCCACCGAGGTGGTGCGGCTGTCGGAGGTCGCCGGAAAG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTGTAGCCGATGGGAAACTGAGGTCCAGCCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //