Array 1 246978-249751 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKM01000001.1 Salmonella enterica strain BCW_5106 NODE_1_length_457119_cov_4.28496, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 246978 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 247039 29 100.0 32 ............................. TTGAATGCCCAGAGTGTGGCAATCACTTTACA 247100 29 100.0 32 ............................. GGGGCGTCTGAAATTGAGGCTCTTTACGCTCG 247161 29 100.0 32 ............................. AGGAAAATCATTTTGCAATGATGAGCTATAAC 247222 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 247283 29 100.0 32 ............................. AACTTAGCACCCTAATTAGCTGATTGATGCGA 247344 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 247405 29 100.0 32 ............................. GCGTTCATCTGATCGCGATACTCTGATTTTTG 247466 29 100.0 32 ............................. ATAACCAGTCGCTTTTATATCGGTTCGCAGAC 247527 29 100.0 32 ............................. GCCTGGTTCTCTGAATCTGCAACGATTATCTG 247588 29 100.0 32 ............................. CCTTCTCCCGGTTAGCCTGGGTTTTGCTGCGC 247649 29 100.0 32 ............................. AAACCCCGGAAATGCAGGAGCGCGTTAAGGCG 247710 29 100.0 32 ............................. GGCCGCGTATTCTTCATCAGTGATGTACCGTT 247771 29 100.0 33 ............................. GGGATCGGCAAACTTGCTTTAACGCCGGACAAC 247833 29 100.0 32 ............................. CATTGAATCATATGGGACTCCGCACGTCGCGC 247894 29 100.0 32 ............................. CAGGAGGCGGATCAATGAGCTACATCGACAAA 247955 29 96.6 32 ............................A TAAATCGCTTTACCGAAGCGTCGGGTTAACTC 248016 29 100.0 32 ............................. AGTGTGTCGGTTTGCCGGGAGTGCCAAAGGGT 248077 29 100.0 32 ............................. CCAGTTACCCCAACGAATATTAACGTAAGAAA 248138 29 100.0 32 ............................. AACTTGCCCGGTTACGGGCGGGTTTCATATGT 248199 29 100.0 32 ............................. CGCGCCCGGGCGATTCTCTGGCCCGTTGCGCC 248260 29 100.0 32 ............................. CGGGAAACAATCATCGGGCAAGAAATCGACCG 248321 29 100.0 32 ............................. CTGGTGGGGATCACGACAATATCAGCCATTTC 248382 29 100.0 32 ............................. TTAAGCGCATAACCGTTAAAGAATTGCATGAG 248443 29 100.0 32 ............................. GGACCGGATATATGAGCTTATACGTCATGAGC 248504 29 100.0 32 ............................. GATATGGGGTTGACGCTGGACAGATCTCCTAT 248565 29 100.0 32 ............................. TTTTAAATCACCACTGTATTTGCTAGCCATCC 248626 29 100.0 32 ............................. CAAAAAGTAACTCCGGCCCCGAATATACGGGG 248687 29 96.6 32 ............................A TCACGATATGAATATGGGGCTTACGTGCAACC 248748 29 100.0 32 ............................. GGCTGACAAAATCTGCCGTCGTCTTTCTTCGC 248809 29 100.0 32 ............................. GGCGCTGTATTAACCCACCGGTACTACAACAG 248870 29 100.0 32 ............................. CCATTTGCTCGCCGTTCCGGCCGAGTTCTGAG 248931 29 100.0 32 ............................. AGACAGGTTTTAGTATTTAGTGACCGGGTGCA 248992 29 100.0 32 ............................. GTGAGCGAATTATCAGTAGTTTCATTGGTGTT 249053 29 100.0 32 ............................. CTGGGGATCTGCATGGACTCCCGCACGTTGCG 249114 29 100.0 32 ............................. GAGGCGCGCACGGAGGCTGTGCCGCTACGTGA 249175 29 100.0 32 ............................. GGTTTCTGAACTACTCATCTGCCATTCGTGAG 249236 29 100.0 32 ............................. ATGCTGGATCAGCCACCACAACCATTTACCGG 249297 29 96.6 32 .............T............... GAGAATACCTTGATCTAACTTTATCGGCAGCA 249358 29 100.0 32 ............................. ATCTGGACTTGCGTTTTGTGAGCAGTCCATAT 249419 29 96.6 32 ............................T CCAACTGGCGTCTTTAAATTACCGTCAAACAG 249480 29 100.0 32 ............................. TTTGCTCAAAAAATTAGGGCAAAGGACTACAG 249541 29 100.0 32 ............................. AGAGCGTTTATATATCGTCATTCACCAAAATC 249602 29 100.0 32 ............................. CGTCCCGGTAAATCTTTCTACGCGCCTGATTG 249663 29 100.0 32 ............................. TCCGGGAGCGTGATTACCTGCCCAGCGGGAAA 249724 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 46 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 266423-269874 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKM01000001.1 Salmonella enterica strain BCW_5106 NODE_1_length_457119_cov_4.28496, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 266423 29 100.0 32 ............................. ATCTAGGAATTAATAACAATCAGTTACTATCA 266484 29 100.0 32 ............................. GTTGCAAAGATATCGACGTTCAGGAGCCTGTC 266545 29 100.0 32 ............................. TATTACCCTTTCAGAATCTTTTTTGGATTGCT 266606 29 100.0 32 ............................. CTATCAACTGTAATACCTTTACTTTCGAGGAA 266667 29 100.0 33 ............................. GGCAAAGACGCGATCCTATCAACACTGCCCGCC 266729 29 100.0 33 ............................. TTACCCCGGCTCAAAAAGACATTCATAACGCGC 266791 29 100.0 32 ............................. CTCGCTAACTCCCTTAAAAGGGATATAATAAA 266852 29 100.0 32 ............................. TACTGGACATGAATAAGCGGTTAGATGAGGAA 266913 29 100.0 32 ............................. GTGATATTATTAACCTGTGAACTATCTACCTA 266974 29 100.0 32 ............................. GCCACCAGCACGACAAACAGCAACGCACGATT 267035 29 100.0 32 ............................. AGACCGCGAGCAGATAACGCAGCTGGAGGCAC 267096 29 100.0 32 ............................. GGGACGAGAAACGCCACTTTTATACCAAAAGG 267157 29 100.0 32 ............................. GAATTTAACCATCGTATTTGCAGTTATTGTTT 267218 29 100.0 33 ............................. GCAACTTTTCAGCCTGTTTATTAACTGCTCTAC 267280 29 100.0 32 ............................. CATGGCGGCGCGGCTGGCATCTTCATTCTCGC 267341 29 100.0 32 ............................. TTGACATTGTTGCTGATGGCGCAGTTATGCCC 267402 29 100.0 32 ............................. GTTATCAGATCGTTCAGCATTGGCGCTTTGCC 267463 29 100.0 32 ............................. CTCTGATTCAGTCCAGTAGAGATGCCATGTGT 267524 29 100.0 32 ............................. ACACCGTACTGAGTCTGAATGATGTGATTGGC 267585 29 100.0 32 ............................. GTGGTCCTCAAGTGAGTCTTTGGAAAAACCCA 267646 29 100.0 32 ............................. CCAGTGCTCACTTGCTTCTACCCGCCCCGATC 267707 29 100.0 33 ............................. CTGGCACGCGTCTGCGATTTGCCGTAGTTCTAC 267769 29 100.0 32 ............................. GCACGTTTGCTGGGGCTGGAAGAAGGTGTTCA 267830 29 100.0 32 ............................. GATACCACCGAGCCTGAAGTGGCAAAAAGACA 267891 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 267952 29 100.0 32 ............................. AGCTTATTCAGATGGGGCATTTATCGCCTTAT 268013 29 100.0 32 ............................. ATAACAGCACTGGCTTCGTTACTTTTGCCAGC 268074 29 100.0 32 ............................. TGATCTGGCTGAGTTCTCCAGTGACGACAAAA 268135 29 100.0 32 ............................. AAAAGAGCCAATACTCCCCAGTAAACCGCCAG 268196 29 100.0 32 ............................. TCGATCCTGACAGCCTGATGGCCCGCCGCGAA 268257 29 100.0 32 ............................. GGGAAAACCCAAAAAACGCGTTAAATCTTTTG 268318 29 100.0 32 ............................. AATTTAACGGCGATCAGGTTCGCATGCTGAAT 268379 29 100.0 32 ............................. ATTTACGTTTATTCAGTTCAGGCTAACGGCTC 268440 29 100.0 32 ............................. CAGATTGACATTAACGCCACGATAATCGAACG 268501 29 100.0 32 ............................. AAAGCGCAGATCAGGCTAACTCAATCAAATCG 268562 29 100.0 32 ............................. AATTTGGATCGCCCTGAGTTTAGGCGCATGGT 268623 29 100.0 32 ............................. TTGAATGTCCAGAGTGTGGCAATCACTTTACA 268684 29 100.0 32 ............................. CGTGTTCACCGCTGCGCCCGGTTATATCCCGT 268745 29 100.0 32 ............................. CGATATTGACGATGTATGACCGGAAAACCTCG 268806 29 100.0 32 ............................. GTGGCAAACGAACAGGGATTTGTCGGCAGTTA 268867 29 100.0 32 ............................. CCAGCCCTCCGGGGCTGGTTACTCGCAGAGCA 268928 29 100.0 32 ............................. CCTGCTGGCTGATGTTAAACGTAAAACCAGTG 268989 29 100.0 32 ............................. GCGACGCGGCGTGGTTTTAACTGGCTGCGGGG 269050 29 100.0 32 ............................. CAGGAAATTACGCGACTGTTTGATCTGAACCA 269111 29 100.0 32 ............................. AAGACGCAAGCGTATTGCGCCACATGCGAGAA 269172 29 100.0 32 ............................. CCCTGGCAGGAATACAAACTTGTGATGCTGCG 269233 29 100.0 32 ............................. TAGAGAAGGGGAAAGGCGAATTTATCCCTTCC 269294 29 100.0 32 ............................. TTGTTCTGTCGCTGTCGTTAAACTCTCCGTAA 269355 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 269416 29 96.6 32 ............T................ AGATCGCCAACGCGCTCGGTTTGCGTCTGGAA 269477 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 269538 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC 269600 29 100.0 32 ............................. CATTGCTGCCAGCCAGAAGCGCCCTTCACTCA 269661 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 269722 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 269784 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 269845 29 96.6 0 A............................ | A [269871] ========== ====== ====== ====== ============================= ================================= ================== 57 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //