Array 1 59012-63189 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACIFA010000011.1 Sphingomonas zeae strain DSM 100049 Ga0373351_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 59012 30 96.7 31 A............................. TTCCTGGATCATATCACCACCATTCACGGAA 59073 30 100.0 31 .............................. TTTTGCGCGAGCGCCTGCTCGCGACTGACGT 59134 30 96.7 31 T............................. GTGATGGGGAGCGCCGCGTTCGTGCGCGTGA 59195 30 96.7 31 T............................. CTCTCGGGCCGCTCCTCGGCGCGCGTTCGGC 59256 30 96.7 31 G............................. AGCGCTATCCTTCTTCCCCGGAGCCACCTCA 59317 30 96.7 31 T............................. CTCATCCCGCTTGCCAGAATAGGCCGGGCAT 59378 30 96.7 31 G............................. AAGCGCCAGCTCCGCATTTCCACCAATTTTG 59439 30 100.0 31 .............................. GATGCTTGCCGAAGCGGGGATCGGCTGCCGC 59500 30 93.3 31 G............................G TAGCATGAGCATGATGGACCCGCGCCTCGCA 59561 30 93.3 31 A............................A TGGCGAATGTCGATCCGATGCTGTTCGATCT 59622 30 96.7 31 T............................. ATCCTCGTGCTTGCGCAAAGGCTGCTTTTTT 59683 30 96.7 31 G............................. TCGGTACGGGCATCACGGTCGGGCGCCTGGA 59744 30 100.0 31 .............................. TGGAGAAACTGTCCAATGAAGCCCAGGCCGC 59805 30 100.0 31 .............................. TTGTTCGGGGGGAGCTGATCGTCGACGAGGC 59866 30 100.0 31 .............................. CCGTCCGCCGTGATCGTCGATAGCATGTCGG 59927 30 96.7 31 A............................. GAACCATTGCACCCGCAACGCTACGCGCCCG 59988 30 100.0 31 .............................. TCAGGGCTTCGGCCATCCGTCGACCGGTGCG 60049 30 96.7 31 A............................. CCATCCGGCCCGTGTCCCCATGGCCTTCCGC 60110 30 100.0 31 .............................. CGAAGCCGTAGAGCCGATCGAAGCGCCTACG 60171 30 96.7 31 T............................. CTGCGTGGGACCGAATAGAAGTCGGATGCCT 60232 30 96.7 31 G............................. GCTTCGACACGCTCAGTCCTATCGTTTCGTG 60293 30 96.7 31 .............................T TCGCCGTTCGTCGTCGTCGCCGAGCCGCTGA 60354 30 96.7 31 A............................. TCGGCGAGGATCAGGCCGACGATCACGCCCG 60415 30 100.0 31 .............................. GACACCAACCCCAAGACGGTCGCGGCCTTCC 60476 30 96.7 31 G............................. TCGCCAAATACGTCCCGAACGATCCCTTCCC 60537 30 100.0 31 .............................. TGGCGCTTGTACGACGCCTCGAGCTCGTCGA 60598 30 96.7 31 A............................. CGCTTCGGCGGCGGGCTTATGTCGACGCTCG 60659 30 100.0 31 .............................. TGCGCGCACTGGATCGGGAGCGAGAAGTCGA 60720 30 93.3 31 G............................T TACAATGAGGTGTCCGTGCCGCACACCTTGT 60781 30 100.0 31 .............................. GTCGCTGCGACGGGCCGCATGGGTAATATCG 60842 30 96.7 31 A............................. CCCCGATGTGCGGGTCACGCGGCCATCGAGC 60903 30 100.0 31 .............................. GGGCCGATCTGGAACGCCGCCTGCTGGAAGT 60964 30 96.7 31 G............................. GGCGCTCAGCTTTTCCTGAATTTGCGTGCCG 61025 30 96.7 31 G............................. CGCTAGCCCGCGATCGGACCGGCTGGCCGCA 61086 30 100.0 31 .............................. CGGGTTATCGCGACGAAGGGTGTGCTGATTA 61147 30 96.7 31 T............................. TGCCACGGCTGCGTCCTCCCTGTGCCTCGTT 61208 30 93.3 31 G............................T TATACAGCAGAGGCTCTCCGGCTCGCTCGCG 61269 30 96.7 31 A............................. GAGGTCTAGGTCCCACCCACTCCCCATCCGC 61330 30 96.7 31 .............................A TCCAGGGCCATACCCAGGCTTCCGCAGAGGT 61391 30 100.0 31 .............................. GATGATCACCTTTTACGGATAGCAGCCGAGG 61452 30 96.7 31 T............................. TGACAATTCGCCCGATAACAGTATGCGGGAT 61513 30 93.3 31 G....................A........ GAAATGGGCGAGCGGGCAAAGAACACATTGT 61574 30 96.7 31 T............................. TCGACCTCTGCACCGACACGCCAGTTCTTGA 61635 30 96.7 31 A............................. TGGCGGCAGCACCGGTTGCTCTCCGTCGAAC 61696 30 96.7 31 G............................. GCGCGGACGCCTGCCCAATGATTAGCGTCAG 61757 30 100.0 31 .............................. CCAACGCGGGCCGTGACCTTAGCCAGGCCAT 61818 30 100.0 31 .............................. TCCCCATAGGCCCGATTGCAAATTTCGCTCT 61879 30 93.3 31 G............................G ATGGCCCCGGCCGCAATGGCGATTAGGCCGA 61940 30 100.0 31 .............................. GATCCTAGATGCCTTCATCGCGTGGGGCATC 62001 30 96.7 31 A............................. AGATCGAGACGATCGACAAGGCGCAGACTGA 62062 30 96.7 31 A............................. CCACACAAGCGACGCCAGTTTGACGACGCGA 62123 30 100.0 31 .............................. GGCTGACCAGCATGGCGATGGTCGCAGAGGC 62184 30 96.7 31 T............................. ACGCCTGTGCCCGGTCGGAGCGCTCAACTTC 62245 30 100.0 31 .............................. ATGGCTCAGCCTTCCACGACCGAGATTTCGT 62306 30 100.0 31 .............................. CCGGCCTGCTTTCTATAGAGGGCGACGTTAT 62367 30 96.7 31 T............................. GGCACCGCTGCCCGGCTTGACGTGCGAGTGT 62428 30 100.0 31 .............................. GGATCACCTCCTTCCGACTGAATGGCAGACG 62489 30 96.7 31 G............................. AACACGCGCTTCGTCGACGGCTATTTCACGG 62550 30 96.7 31 G............................. TATCGACTGGCCTCGTATCGAGCTCGAATAC 62611 30 96.7 31 T............................. GTGTCGCGGTCGAGCCGCTGGACCAGCCTAC 62672 30 96.7 31 ........T..................... ATGTAAGGCATGCTTACAAGTTCCTGAAGCC 62733 30 96.7 31 A............................. ACCCCTGCCCCTCTGATCGCATCCCGAGCCC 62794 30 100.0 31 .............................. CAGTGGACGTTCCAGACGTCTTTCATGGTGC 62855 30 93.3 31 A.................A........... CACCAATGGCCAAAGCCAAGCCCAGAACTGC 62916 30 100.0 31 .............................. GCCGTATTGTCCCAATACAGCTTCTGACCCT 62977 30 96.7 31 G............................. CCACCTTGGCCCACGAACCCGGCCGAGATGC 63038 30 100.0 31 .............................. GCCGTATTGTCCCAATACAGCTTCTGACCCT 63099 30 93.3 31 G....T........................ CCACCTTGGCCCACGAACCCGGCCGAGATGC 63160 30 96.7 0 ...........................G.. | ========== ====== ====== ====== ============================== =============================== ================== 69 30 97.5 31 CGGCTCCCCCGCACACGCGGGGATGGTCCC # Left flank : CCAGCGTGGCGTGATCCCGGGCATGATCGACCGGATCAAGACCTTGCTGATGCCAGGCGGTGTCGACGGAGAAGGTGACGGTGCGGACCAGCCGCCCGCTCCGGTCAATAGCTGATGCCGCTGACCATGGTCATCACCCGCGACGTCGAAGATCGCTATCGCGGCTTTCTGGGCTCGGCGATGCTGGAACTCGCGCCCGGCGTCTATGCCCAGCCCCGCATGAGCGCCGGCGTGCGCGCCCGCATCTGGACCGTCGTCGAGGAATGGCACGCCCGCCTGCGCCGGGGCAGCATCGTGATGTGCTGGGCCGAATCCGCCGCCGCGGGTGGCCTGGGTCTCCTGACCCTGGGCGAGCCGCCCAAGGACGTGGTATCGCATGAAGGCATCCTGCTCGTGCGCCGCGCCTTGTCCTGCCGTAATCCCGCCGAACCGACACCGTAAACCTCGGCTCGACAGAGGGTCTTTGACATTGTGAAGAAAATCAACGATCTGCCTGGCAG # Right flank : CTCGCCAGTACGCTCGATCGGGATCGGCACGCACGCCCCCCCACGCGAAGGGGCAATCGGATATCGGCGCTTTGTTCGTGAAGATCGGACACGAATGGCACTACGGCTTTCCGCGGTCCGCGGAAATTTTAGATCGCCACCGGCCCAATCTTCGGTGCGACCCGGGGGGCGCTTGACGGTCGCCACGACATCCTGTGCCGAACGCCTGATGCGCAGGGCACGACCGACAGTCGCCCCTCACCGCGCACGCCGCCCGACCAGCCGTGCCCAGGCTCGCCGACGCGCGGCGGGGTCGAGGGTCGCGAAAATCCGCCGTTCCCGCGCCGAGAGAGCAGAAATTTGCCAGCCATAGGCCGCCATGCATGCCTCCATCGTCTCATCCGGCGCGGCGCCCTGTCCGCCATTGTCGAGCCGTGCAGCACCGTCCGGGCGCTCCGCGCCCGCCGCCGGACCGGTGGTGATGAGCCGACATCGCCGCAGATCGCGCTCGACCTCAGCCA # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGCTCCCCCGCACACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //