Array 1 3391-3117 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYYH010000002.1 Deinococcus sp. 14RED07 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3390 29 86.2 32 ATCC......................... CAGATCCACCTGGCGTTCGAGGGTGATAGCCG A [3384] 3328 29 100.0 32 ............................. ACCTGGAGATGACCTCACAGGTGGAAGGCGGC 3267 29 100.0 32 ............................. CCACGGCCAGCGGGATTGGAGCGCAGATCAGC 3206 29 100.0 32 ............................. GACGCGCCGCTGGGCCAGGCATGGCAGTGGTA 3145 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.2 32 GAGTTCCCCACGCCTGTGGGGATGGCCCG # Left flank : GTAAGGCGAAGCTGGAGCCACGAGGAAGTCACGTCGCAAGGAGAGGGAGTGGGAAACAGCGCGGTGTGGAACCGGCCATGTCCGAAATGCGGACGAGAGCGACAACCGTCGCGTGCGAGCGGACCTCACAAAGGAGCGACTTGACCCACTGCCCTTCTGCGACGGCCGACATCTCTAGGTGGCCTGTGGCAATAGACAGGAGAGAGTGCCCTAGCCATCCGATGGCGACGATGCGGTAAACCTTGGCCCGGTTTACCGCACTTTTTGCGGTAAGTCGGAGGCGGTGCCGACCAAGAGGTACGAGGATTACCATCCTGAGCCCCCAGGGCCAGGTCGACAAGTACCGTGGCAAATTGAAACCACTGTATAGAGATGAATGGATTAGTCCAGTGGCAAAGTGAAAGTTTCACGAGTCAGTTCCGTGGCAAAGTGAACGAGTCCAGTTTCAAACTGAAAAAACAGGGTGAAACCCTCTATATCCAGTACCAAACCAGACTGAA # Right flank : AGCAGCCCACCATTTTGCTGAGGGTCTGATAGACGTAACTTATCGCCTGTGGAATACGATCTATGCGCTTGATTCCATATCACTCGAAGACTTCTGGATGTCAACTGACGGATCAAGTCCTGATCGGCTGTGCTCTCCTATGCTTAGCGGAAGAGCAGATTGAGGCAGGCGTCCACGGTCGTGTCGGCCCTCGGGTCCTTCAGGCAGTCGAGCAGGCTCGCCCAGTAATCCCGCATCACCACATCGAACAGGTCCAGATCGTGCTGGGTCACGCCATCGTTCTCGAAGTACCAAGCGCGATTTGCTTTCTGCTCGGCAGTCGCGGCCAGCAGGGCCTCCTGAGATACGTCCTGCAGGTTCTGGTGCGTCTCCTGCAAGTGTCCAACCGCAGTTTGGAAGGCCGATCGAAAGAGGCCGATGGCGTTGCCCTGATTGTCCAATTGTCGTTCGCTGTTCATAGCTCTCCTGATGCGGCGCGTGTGGTGCGAGTCATTATCGGA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGCCTGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30080-30413 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYYH010000002.1 Deinococcus sp. 14RED07 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30080 29 100.0 32 ............................. CGGACTAGGACAATCCAGAGGTCTTCGGTGCG 30141 29 100.0 32 ............................. GTGCGGATTCTCCCACCACGACGCACGCACGC 30202 29 96.6 32 .................T........... CGAGAGCGGGTTAAAACAGGGCGGGTTGGTTG 30263 29 100.0 32 ............................. TGCAGGCGCAGCCGCAGCGGCATCGTGCTCCC 30324 29 100.0 32 ............................. CCCTGCACGCCGTCCAGCGTGAGCCCGCCCAT 30385 29 93.1 0 ..........................A.T | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GAGTTCCCCACGCCTGTGGGGATGGCCCG # Left flank : TTCCGGGACGGTCCTTGTGAATTGCGCCTGAATGGACTACAGGCAACCTCTCATGCGGCTGCCGCCTGGTCAGGGCAGATACGTCACGCCGTCGACTTGCCCTCCCGGGCTGAGCGCCGTGACCATGGTGATGGAAGCGGCGTTCAACCTTTGTGCACTGTGCGGATCAGGCTGAACTCTTACACTTGGCAGCATGAACGACGAGCATGCCACCGACGACCTGGTGCTGCTGGATCTGCACTATTCCGGGGTGCTCTCGCGGACGAGGTGCAGGCACGTCTTCAGCTTGATCCGGCGTTCCAGATGGCGGCTGAGCAGTACCTGGCGGACTGGTCTGAGCTGCTTGACGTCTTCGACCCGGATGGACTTGTGCCGGACGGCGCTGAAGACCGGCTGATTGCGCGACTCCGGGCTGACGTCCACGAGTAACCACCGTCCTCGACAGCTGGGTTTTGCGCGTGTTCCGGGCCTGATTTCAGGCCCGGTTCTGTGTGCTAGCG # Right flank : TGATGACCTGCTCCCGCCTGGCTCTTTGCGTATGCTCGCTAACCCGTCATCCACCGGATTTCACCGACTTACGCAGTCTCTTGGACGCCCGAGTGTTGGCCCACCGCGGGTGGGCCACGAGACGAGCATGACCATCAGCACCAGCAGCGTGTTCTCCTTCAAGACGGCGAAGTTCCCTGGGCTCGGGAAGGGCGGCCGCGTGCAGATCCCACAGCATCTGCACAGCCAGCTCGACACGTCCAACCGGATGCGCATCATCCCCTGGGCTGCGGCTGAAGCAGTCGCCCAGGTCCTGCTGGGCCGCGTGGAGGTCGAACGCATCCCCAACCGCCTCACCGTCCAGACCATCGACAAGGAAGGCCAGCCCGTCCTCATGGCCTCCCACCCCGCCCAGGCGACGTGGGTGAATGCCGGGCAGACCGTGCGCCCGTACATCCTCCTGATCGCCGAAGCCCAGCTCGCAGCCAAGCACACCGAACTCGCCGAACGGTGGGGCGCCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGCCTGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2710-2254 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYYH010000009.1 Deinococcus sp. 14RED07 9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2709 29 100.0 32 ............................. CACCTACAGACGGCAGGGCGCGGCTTGCGTCC 2648 29 100.0 32 ............................. ACGTACGGCCAGCAGTACCGGTTCCTGCGTGG 2587 29 100.0 32 ............................. GCTGAAACGCTCGCTGCAATCGAGGCGCACGC 2526 29 100.0 32 ............................. AGCGCGGTGCGGAGTTGCGTGAGGGTGGGCGT 2465 29 100.0 32 ............................. GCGCGTGCGCAGTACGCCCAGAATCAGCGCGG 2404 29 100.0 32 ............................. ATCATCGTCGTCAAGAACAACACCACCCTCGG 2343 29 100.0 32 ............................. CGTACCCAGTTGCGCGGGCTGGTCGTGGCGGA 2282 29 93.1 0 ........................T.T.. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.1 32 GAGTTCCCCACGCCTGTGGGGATGGCCCG # Left flank : CCACCACCTCCTCGGCGGCGACCAGAACGACCCCGAACCCACCGCCCCCGGCGACCTCTGGGACCCCGAAGGCGACGTCCAGGGCGGTATCAACCACGCATGATCGTCATGACCCTCGAAGCCGTCCCACCCAGCCTGCGCGGCGAACTCAGCCGCTGGCTGATTGAAGTGCAACCCGGCGTGTACGTCGGCAACACCACCGCACTCGTCCGCGACCTCCTCTGGGACAAAGTCGTGCAGTACGCCCGCACCGGCCGCTGCACCCAGCTGTACCGCGCGAATAACGAACAGGGCTTCGCCATCCGCCTGCACGGCGACCCCCGCCGCACCCTCGTCAGCTTAGACGGCTTCCAACTGGTTGCCGTTCGCAATGCCCGTCATGCAGAATTGCAGGGGGAATACGACCCTCCCGAGGACGATGACAAACTGTAAGCTGAATCCGACCCCAGCGAAGAGACCTCCCGGGGTCACGCGCCCGTTCCACCTCGTGTTTCTGAAGT # Right flank : GTCGGTTGGGATGGGGGCGCGCGGTCTTGTGGACGGCACATGATCATGGCAAGGTCAAGGCCCGCCGCGCCGAACTCGAAGCACGCCCCACGCCCCTGCGGGTGGATCCCACGCGCGTCACGCAGGTCGGCAAACGCATCGGCAGCGTCAAGTGGCTCGACACCCTTGACGACCGCGCCCAGAAGGACATGCAGAGGCGTGGCCCAACCGCATGCCCGACAGTGTCCGCAGGGCCATGAACCTTCCGGACTGACGTGAGTGCGCCGCTGCCAGGCAACTGCCGACGCGTGTCCCTGGCAGCGGCCGCTCAAGCGAAGTGCCGCCCAGTGGACCACTGCGGCCGGAGTGTCATGCTCAAGCTTGAGAGGGAGGGCAGCAGGCTGCCCTCCCTCTCAGAGCTGATGGCGAGCCTGAAACACCCCGCCTTAGTCCTGATGACTTACTATCCAGATGTAAACAATGGTCAGAAGCGCGATTCCCGCGTAGATCACGCGCAGTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGCCTGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11757-12882 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYYH010000009.1 Deinococcus sp. 14RED07 9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11757 29 96.6 32 ............................T TCAATCGGTTTTAGGGCGTGAAAATTAGCGTT 11818 29 100.0 32 ............................. CTCCGCACAGCCGCATTTACATGAATTTTGCC 11879 29 100.0 32 ............................. CTGTCCACCTACGAACTGCGGATGCAGGGCAG 11940 29 100.0 32 ............................. CCATCGCCATGCACCAGCACAACCACCCGCAC 12001 29 100.0 32 ............................. AGAAAAAAATGTCTCTTATGAAATGCCCGGTA 12062 29 100.0 32 ............................. ACGGCCCGTGGTTCAACCTCTCCGATCTCTGC 12123 29 100.0 32 ............................. CCAGCCGGTGGCGTGGGGAGTTGAGCGGCGGA 12184 29 100.0 32 ............................. CCGCCGTGCCGCTCTTGCCCATGTTCGGACCC 12245 29 100.0 32 ............................. TGGCTGGGGCGCATGGTGACCCTGGTGGACGC 12306 29 100.0 32 ............................. CTCGACGTCCAGGCCAAACGGTTCGATGACCT 12367 29 100.0 32 ............................. CTCGACGTCCAGGCCAAACGGTTCGATGACCT 12428 29 100.0 32 ............................. TCGGTCGCTTCCTGGGCCGACATGCCAGTGGC 12489 29 96.6 32 ............................T ACCAGGGTCACGCCGTGTGGTGGCACAACTGC 12550 29 100.0 32 ............................. CCTGCACGCCCGCCCGCCTCGAACTGGCCATG 12611 29 100.0 32 ............................. TTCACCAATCCCCCGCACGATGCCTGAGCCGC 12672 29 100.0 31 ............................. GCGCTCTGCACGCCCACGCCAGAGGCAGAGC 12732 29 100.0 32 ............................. GATGGGGGCGAGTGCAGATTGATGACTGCGGA 12793 29 100.0 32 ............................. GCCATGCGCCTGCTACTGGAGGGGCAGCCCTG 12854 29 96.6 0 ...................A......... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GAGTTCCCCACGCCTGTGGGGATGGCCCG # Left flank : CACGAACGCCGCGACGGACGAGCTGGCCGCCGAAACCCCCCACTTCGGCACCCGCCTGGGCGACGACAGCCTCCGCATCGTTCCCATCCACCGCAACGTTGCCGACTACCTTGACCCGAAAGGCCAGACCGCCGCGCAGATCACCACCCTCCAGAAAAACGACTGGGACACCGCCCGCGCCATCTACCGCCGCAGCCTCCAGGTGTCGCGCCATGACCTCGTCAGGCACTACCGCGACCACCCCACCCGCCGGGGCACGGAACACAACGGCTGGGCTGCCCATCCACTCCTGCGAGACGCCGAACCCCTCATCCTGACTGGCAATCAGACGGTCATCGGCAAGACCCGCGTGGCCCTCGACCCCGAACTCGGCCTCACCTACGAGCGCATAGAATGACCGCAGGCACCCGCCCGCGCCGCATGAAAATGTAAGCTGAGACCGAGGGGGGAGAGGAGACCTCCCGCCCCCCTTACTCCCCCGGAGTGCGTGTTCCTGAAGT # Right flank : GCACCTTCAAGGCGGCCCGATTTCTCTCGCCCTCAGGCGGAGGTGGGTCGCCGCGCGGCGTCCTCGAAGGCCAGATCCGCGTTGATGGCGGCAGCGGCGCGCGCTCCGCTGGCGGCGGCCAGGACGACCTGTTGCTCGCCGATCATGTCCCCGGCGGCGTACACGCCTGGCACGCTGGTCAGCCCACTCTCCAGCGTGACCTTCAGCAATGTCGGCGCGGAACGCTCAAATTGAATGGCTTGCAAAGCCGCTGGGTCCGAGCGGACTCGTAGAGCTGCGCCGTAGAGCGAGCAGGAGAGAAACGGGTTCCGGACGTGGAGCCGGCAATCCGGTGAAGTTCCGGATTGTTGGCGAAACAAACGGAATCCGTATCAGACACTAAACCACCCACTCTAAATTGAGGCCAACCGCCATATCCCTCCAGCAATGCCGCGTGCGCCCACCCCGGTCAACGGAACAGGTTGACCTGCAATGGCCGACCATCCAGGTCCAGGCCGAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGCCTGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //