Array 1 20672-21868 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUSW01000053.1 Bacillus pseudomycoides strain AFS042788 AFS042788_98_G2_Contig46_140514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 20672 28 96.4 37 ............T............... ATCCTTGAATACATGATGAGTAATTTCATTCCCTACA 20737 28 89.3 35 ...........T........T..G.... AAAAATACTTCCCTATTTTTTGAGCGACAGCATAA 20800 27 82.1 37 ...........T.-C...TT........ CTGTGCCGGTGCTGAAAATGTACCAAAATCAGCAAAC C [20811] 20865 28 96.4 36 ..........G................. TTGAGCTTTAACTTACCATCAAATACTTTTGCATCA 20929 28 89.3 37 ..............G..GT......... AGAAATTGAAATCATCGGCACTTGGATTTGGATAACC 20994 28 89.3 36 ..........G.G..............T CCTCACCGGGCTGGTGGTAAACCATTGAATGATACA 21058 28 92.9 38 ...G.......T................ TTAAATCAATTAATGTTCCTAAATGTTGTTCTTCTTTA 21124 28 96.4 36 .....................G...... TTTAATGAAATTATGGCCCTTGTTTCACCATTTGAA 21188 28 92.9 38 ............T............C.. TTGGTATTTAAATTGGGAAAAATAGAATGTTTAATGCC 21254 28 92.9 37 ....A...................T... TTTGCCACCAGATCCATAATCAATACCCATGACAGTC 21319 27 96.4 36 .............-.............. CTTCCTACTGGTCTTGATGCTTGTTGCGTGACTGCA A [21334] 21383 28 92.9 38 ...........A......T......... TACGTAGTCAAACGCTTGCAGCGGTAGGTAAAGTAATA 21449 28 100.0 38 ............................ TAACCGGTAACCATACAGATCGGCATTGAAAATGGTTG 21515 27 82.1 38 ...........T.-C..CT......... CTAAAAACTCATAAAAGTAAGCAAGTTGATCTCCGTAA C [21525] 21581 28 92.9 37 ..........G.T............... TTCCTTTTTTCTGACGTCTTCAGGATTCATTCCCCGC 21646 28 92.9 37 ...........A.....G.......... ATTATACGGCTACAAAGTAATGTACAAAGGACGCTAA 21711 28 92.9 37 ..............G.........G... GTAAAGATCGCTAATCTTTATAAGCATAGATATGTCA 21776 28 92.9 36 ...........T........A....... GGAATCTATATTGGAAACAACAAAATGTTTAATGCA 21840 28 96.4 0 ..........................C. | A [21859] ========== ====== ====== ====== ============================ ====================================== ================== 19 28 92.5 37 TTTATATCCCACATAGTTCAGATAAAAC # Left flank : ATTCCTCAATTTGAACACTCTATACGCTTCTTACTTGAAAAAAATGGGGAAATTGTGACCAACCTAGGAGAAGATTCTGTCCAAGAAGAAAAAACATTAAATCAGTTGTTATCGTATAACAAATTAGAAGATATTTTTGGACTGAACGTCGTGAAAGATTTGCAACACTTGTTTGTTAATAAAGGTGGTGAGAATCTACGTAATAAATTGTCTCATGGTTTATTGTCTTCAGACGAATTTCATTCTCCAGCTGCTATTTATGCATTCGGGATAATATTGAAAATTATATCGTATTTTAAAATAGGATATTGAGCTAATTTTTGTTCATAATAATTAGAAAAACAAAAAGAACTTGTAGAAATCACTACAAGTTCTTTTGAGGATAAAAGTAGCAAGGATAAAACAATATATTTCAACCGATTTCCAGTACGGTACTTTAGAGCATTCATTTTTATATTGAAAGGGTTAAATGGGCTTAACTACCTATTGGAGCATATTTC # Right flank : CCTATCCACATACGGATGATACACCTTATGATAGCAACATTTTACTACGTGTAGCAACCAACATTTTGCAGCGAACCATTGATTGTGTTTTTGTATTCTCTTATAAAATGCTGAAAGATTTTGTCATAGTAAGGTTTTCTGCATGTTTGGAAAAAAAGAGGTTCACTGCAAACTTACGGAAGTACAATTCCTGTTCCTGTTATCTTTTCTTTATCAAAATCGTACTTGCAATTTAAAGTGTGAATGTATTGAAGTCCGGGAATATCAATTTCCTTTGTTTCGATTCCGTATCGTTGAACCTGTTTTCTAGAAATAGAGGTTGTAAGCTTTTCGATTTGCATTCGTAATACTTTTCGCTGTTTCGAATCTTTTTCCTGTTTAAATGTAGTAAATAGCTCACGATTCTCTACATATATAGACCAGGGAATAACTTGATAATTATCAATATCACGCAGCAACCTTTGTGCGTCTGTATTTCTCATATCGTTTAGTTGAAGTTT # Questionable array : NO Score: 3.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.11, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTATATCCCACATAGTTCAGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [17-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 28594-29080 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUSW01000053.1 Bacillus pseudomycoides strain AFS042788 AFS042788_98_G2_Contig46_140514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 28594 29 100.0 37 ............................. ATTCCACCAACGTAATCCTCGACTTGTTTTATATCTA 28660 29 100.0 36 ............................. ACAGTGTCTGGTACCAGTGGTTCCCAGTTAGTTCCA 28725 29 100.0 36 ............................. ATTTGAACAGGTTTGTAGTATGTTTCTTTTTGCTCA 28790 29 100.0 36 ............................. TATGGTATGTATAATATCCCTATCGAAAGTGAAAGA 28855 29 100.0 36 ............................. TTTGCTTTCCAATACACCTGCAAGTCTTTACTTACT 28920 29 89.7 35 .......TA.........C.......... TATTGTTATGGCGATATAACCTATGTTGACAAGGG 28984 29 89.7 39 .C............G.............T TCTCCAATATCAGCATGTAGAATCTTTTTGTTTTTAAAG 29052 29 93.1 0 .............C.A............. | ========== ====== ====== ====== ============================= ======================================= ================== 8 29 96.6 37 GTTTTATCTGAACTATGTGGGATATAAAG # Left flank : AAAATGTAAAATTTTTGCTTTTTTTATTCGGTTTATTCTCAAAGATATATAGGTTCTCTGCATATATTGCGTTTGATGTTTTTAGAGCTTCTTTGATAAAACTCACAAACATAAAACGATACGAGAGAGGAATTACTTTGCAAGTAAAGCTTACTTTCAATCTCATCATTTTCCTCCTTAACCTTTAATATAGGATTATTATAATGTATTCAAAAATTAAAATTCAATAAATCTGTAGAAATAAATGGAAAAAAACCTTTCTGTTAAAAGAAAGGTTTTTTCTTGATCTCATATAGTAAAGATAAAAATTATGCGGTACTTCCGTAATTTTGCAGTAAACCTCGTTTTTTCAAAACATGCTGAAAACCTTGATATGACAAGGTCTTTCAGCATGTTTGAAGAGAATACAAAAACACAATCAATGGTTCGCTGCAAAATGCTGGTTGATACACAGGATAAAATGTTGCTATCATAAGGTGTATCATCTGTATATAGATAGG # Right flank : GCAACAAGAGAAAAAACCACAACAAGAGTAAAACAAAAGGAACTTGTAGTAATAACTACAAGTTCCTTTTAAGATAATGTTAATAAGACAAATTATTATTTTATTTTTTCTTCATACTGTTTAGCAAGTTTATAAAATGAAGAACGTTTAATGCCATATTTTTTCATGGCGCCTAATGCTGAAATTGAACCGGATTTCCATTCCTTGTAAGCATCCGTGAACTCTTCTGTTATTTCGACAGGCGGACGTCCTAAACGTTTACCTTGTTTTCTAGCAAGAGCAATTCCTTCAGCTTGACGTTGTTTAATATCAATGCGCTCTTTTTCTGCAAAGGCAGATAATATTGTCAGTGTTGCTTTTTGAATTGCGCTCTGAATAACATCATTTGTACTTTCTCCAGTGTAATTGACGTTAATGTATGGTTCCTTTATAAATTGTAAATTTACTTTATGCTTTTCGTAATATCTAAATTCTTCTAATGTATCATTCATATTTCTTCC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //