Array 1 349124-347474 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSSU01000003.1 Vibrio cholerae strain DL4211 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 349123 28 100.0 32 ............................ ACACTCATTCTTAATCATGCGCTGACTGATAC 349063 28 100.0 32 ............................ TATTCCTAAAGGAATAGTCACATCACAAGGAT 349003 28 100.0 32 ............................ CATTGGGGAAGCACTGCAGGTGCGGCAGTAGT 348943 28 100.0 32 ............................ TCCTTAATCAAAAACTCGTGTCATCCCAAAAA 348883 28 100.0 32 ............................ ACACATTAGTACACTCTTGTGGATGATAGATG 348823 28 100.0 32 ............................ TTCTTGGTGTAATCCGCCTCCGGCAAGCGAAA 348763 28 100.0 32 ............................ TATGTCAGTGATTAAACATTTACCGTCTTTTT 348703 28 100.0 32 ............................ TTACTGCGGATGTGGTAGGAAATAGCACGATC 348643 28 100.0 32 ............................ TGTTAGGCTTTCGGGTTGTACTGCTCTAGGTA 348583 28 100.0 32 ............................ TATGCAAGATCGAGGGCTTTACTTAAAGGAAT 348523 28 100.0 32 ............................ TCAAGCACAATTAAGGCTGCATCTTCAAAGGG 348463 28 100.0 33 ............................ TTCCCAGCGCTGCTCGACGTTGTTGTACACATC 348402 28 100.0 32 ............................ GTAAACCACGCGCTTGATGGTGACTTTGTACT 348342 28 100.0 32 ............................ GATCCCCTTAGAACTGGCAATCTTCTCTTTCA 348282 28 100.0 32 ............................ ATCAGCTCGCATCTTGTTCTCAATGTGCACAT 348222 28 100.0 32 ............................ TTTAGTGCATCATCACTAGCCAATTTAAAGCA 348162 28 100.0 32 ............................ TATCGACTAACCGCAAGCTGCTTGTCCAGTAT 348102 28 100.0 32 ............................ TGTCGGCTTGTCGGATTTGCACCGTCTAATTT 348042 28 100.0 32 ............................ ATAAGCACCTACAGCCAAAGAAGACCAGTCAC 347982 28 100.0 32 ............................ AAATTCATTCAGTGTGTCAGCGAGACTTCTGA 347922 28 100.0 32 ............................ TGAATATCAGCCAGTGCTTCGTGCTTATATTC 347862 28 100.0 32 ............................ AAAGGTTTGGCCTTAGACGTTAGTTCTTCAAT 347802 28 100.0 32 ............................ TATGATTCTGATTGTCATGCGCCCTCCGTGGT 347742 28 100.0 32 ............................ TTTCTGATTTAATGATGACATCTTACATGTGA 347682 28 100.0 32 ............................ TATTCCCTCCTTACGGAGTTATCTTCTACATT 347622 28 96.4 32 .............A.............. AGTACGTTGCTGCTGAATTTTTTAAAGTCGCT 347562 28 96.4 32 ...............A............ TCTTTATAATTTGCATGGTCTGCACGATAAAT 347502 28 92.9 0 ......................G.A... | T [347482] ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGGCCTCTCAGCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGCCGTAATTTAAGTGCTGCGAAGCTGCGCCGTTTAATTGCACGAGGGAGTATAAATAAAGAAGGCGAGCAGCGTTATAAAAAGAAGATGCTGAATCAGAGTATTAAAGGTCCATATCTTGATTTACTCAGTAGCTCGACAGGACAAAAATATCGTAAATTCTTTGAATTTGGTGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTCAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATGCCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCCTAACTGACTGTTGTAACTTACTTTTATAGATTTATTCTATA # Right flank : TCTTTATATATCTTATGGTTGGGGTTATATAAATGACAGTTTGCTTTGAGATTTCCCGCTTACTGGCTGTATATCCAAAAATGTGGTAGCGTTTCCCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATATGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGATGAACTCTCACCAAAATCGACCATTAATGCCTCTACGGATATGAGTCAGTCTGCCTTTTTACCGAAAGGCTTTCAGTTTGAAGCTCCTAAAGCGCCGCAACGCAACTACGATGTGACGTTAGGGGATACCGCTAAAGCCGTCGGTAGTGGCGCTCTGCGCTCTCTGGCTGGGCTTGGCGAACTCTCGGAGAACTTCCTTGGTGTGGGTGAGAGTTTTCGAGATTTGATGTCGTCTGGCTCGGATGCTCTGCAAGAGAGTATGACTCAAGATGGCCGTGACGCGCTGAACTCCCGTCTCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6768-7455 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSSU01000049.1 Vibrio cholerae strain DL4211 contig49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6768 28 100.0 32 ............................ CCCCAAGCTCAATGAAATCATTTCGGGCTTGC 6828 28 100.0 32 ............................ AATCGCTCCCAATAAATCGAGTAAGAATTGCA 6888 28 100.0 32 ............................ TGATAAGTACGGCTTTAAGTCTTCCGACTTAC 6948 28 100.0 32 ............................ TGACCCATTGCGATGGCGAGGTGTTCACGCAT 7008 28 100.0 32 ............................ TGAATAAACTTGATCAAGTACGGGATCGTGAA 7068 28 100.0 32 ............................ AAAAGGAGAAAACACCCATGTCCCAAGGGAAT 7128 28 100.0 32 ............................ TGATGGTATTTCAGGCATATTTACAGAGCATT 7188 28 100.0 32 ............................ CGCAAAAGAGGCGGCAGGGTTGGCTAAAAGCT 7248 28 100.0 32 ............................ TCGCACCAAATCGCTCGTTAGAAATTTTTTTT 7308 28 100.0 32 ............................ TTCTAGTGGGGACGGCAATCAAGCTCCTAATG 7368 28 100.0 32 ............................ TCTACTTGCTGAGGCGGCAGGGATTGAGGTTA 7428 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCGCTGTAAATTTCAGTGTTATTGCCTCATTGAGTTGTCGCGCCCATGCGTGGTGAGTTGGTTTGTCGGAGAGGGTCTCCACATTGGCCTAGTTGCTAAATGAAAGCCTGCATTGGTCAGTTCATAGGTAAAAGTTGAGCCAGTTCTAATTCAAGGAAACTCGGAGTTTGGCCAATGATTTCAGTTGGTTATCATTGATTTGATTCAAATGTAAAGTGTTGAAGCTTAAGCATAACAAACGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTGCAGTTGTTGTGTTTGAGTTTAGTGGTAGTGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTGGTTGAGTTTTAAGTTGTTGATTTATATTGATAATAAATCGAGTAAAAATAAAAGGTATTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : ATATTTATAACTTAGGCATTTGGGATCGGCCAGTTAACAAACGCCTTAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTACGGTTGTGGTGTTCGAGTTTAGTGGTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTATGCTTAATCCATTAAAATCAGGTGTTTGTGGTTTTCGTTCCCTTTGGCATTTCGTTTAGGTTTTGTCGGCAATTCAATATTGTTTTTCGCTGCCTAACGAAGCGGCAATTCTGCGTGCGCTTTAATTTCTGAGTCATTGCCTCATTGGAATGTTGAGTTTGCGCGAGGTGAGTTTGGCTCTCTCAAGTCGCTTTGAGCAGTTTGGTGCCTTTACTTATGGGCTTAAAGTCTGTCGGCAATTGAACATTGTTTTGCGCTTTCTAATGAAACAGCAATGCGTTTGTCGCTGTATGTTTCAGCGTGATTGCCTCATTGAGTAATCTCGCCAATGTGTGGTGAGCTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 134106-138517 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSSU01000016.1 Vibrio cholerae strain DL4211 contig16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 134106 28 100.0 32 ............................ AGTGAGAGTGTGTTCCGCTTCAATACGCTGGG 134166 28 100.0 32 ............................ GTCAAGATATCTGAGGAGCTTTGGCGCGAGTC 134226 28 100.0 32 ............................ CTCGAAAAAATCCGCTTGTTAAACCAAGCCTG 134286 28 100.0 32 ............................ TTTGATGAGTTTCAACGAGAATTAGGCACTGA 134346 28 100.0 33 ............................ ATAACGTTAGCCTCAACACACTCTGAACGTATG 134407 28 100.0 32 ............................ AAGTCGAGACGAACTAAGCGAGTAATGCCAAG 134467 28 100.0 32 ............................ ATTGCAAGGGTCATGCGCGGTTTTTGTGGCTC 134527 28 100.0 32 ............................ GCAAACGTCATTTCAATGTAAATGTCATTCAC 134587 28 100.0 32 ............................ AATAAAGACATTGATCGTGACGTCTCCTTTGT 134647 28 100.0 32 ............................ AGTAACTCAGCCCGCAACCCCGTCATCTCGTA 134707 28 100.0 32 ............................ ACCTATCGCTTTAAATCGCGCTACATACGCCT 134767 28 100.0 32 ............................ AAGAAATACCAGACAAAGCGCGGCATCTTAAA 134827 28 100.0 32 ............................ AGACGCGGAAGCGGCTTTCGATTTCTACTTTG 134887 28 100.0 32 ............................ CTAGCGCGAATCCTGATACTCCTTGGGATCCT 134947 28 100.0 32 ............................ TTGAGCGGAGAAAAGCTCCAATCACCATCGGC 135007 28 100.0 32 ............................ ACTGCACCGAGTGAATCCAAAAGCTCTTCTTT 135067 28 100.0 32 ............................ TAAACGAGTAAATGGAACAAGTTGTAATAAGA 135127 28 100.0 32 ............................ AAAAAGGCCAACGCTTCCAAATTGGAGTAATA 135187 28 100.0 32 ............................ GAAATGGTTGGAAGCTGGCAAGCCTAGTGCAA 135247 28 100.0 32 ............................ ACAATATTTAGGCTGCTCTGGTTCGTCTTTTT 135307 28 100.0 32 ............................ TGTTTACTACTGGCAAGAATCTGACGGTTATT 135367 28 100.0 32 ............................ AACAGGTGACAGGGTAGCACCTCAGCAAATTT 135427 28 100.0 32 ............................ GTTACAAAGGTTGCTAAAAAATGCCTTGAGCA 135487 28 100.0 32 ............................ AAGCGCGCCCACATCAACCTGCTGCAGTACCT 135547 28 100.0 32 ............................ TACGCGCGAACTGCTGCAAACGTTGCTCGATC 135607 28 100.0 32 ............................ AATCCTAAAAATGGCCTCGACGATTTCAGGTT 135667 28 100.0 32 ............................ TTCACCCTCCGGGCTAAGTGCTGAACCTTCAA 135727 28 100.0 32 ............................ CGTCACTGAGCGGGTTTTTTAATACTCAAAAT 135787 28 100.0 32 ............................ AGCCAACCGAGCCGGTGCAGATTGGCAGTCAT 135847 28 100.0 32 ............................ AAAAACACAAACCCAACAACCTACACTCTCAC 135907 28 100.0 32 ............................ TTAAAAGGTCGCTACACCAAGCTTCGCGCTTC 135967 28 100.0 32 ............................ ATCAGTGGCGTTTTTCGGTGATCAGATTGCAA 136027 28 100.0 32 ............................ AAGCGATGAACCACTTTGAGAAAGTTCTAACA 136087 28 100.0 32 ............................ ATTGTCCCAAGCGGTTTCTGCCTCGCTTAGTT 136147 28 100.0 32 ............................ AGTCATTCATCATGCAGGCAAGATCATCAAGG 136207 28 100.0 32 ............................ ACAATCCTCCATCGACGTACCAGTGACTCTCA 136267 28 100.0 32 ............................ ATTATGTGACGTCATATAGCAGACTGTTGACC 136327 28 100.0 32 ............................ TTAACGTTACATGGTGATTGATACAGTGTCGA 136387 28 100.0 32 ............................ ATTATGTGACGTCATATAGCAGACTGTTGACC 136447 28 100.0 32 ............................ TTAACGTTACATGGTGATTGATACAGTGTCGA 136507 28 100.0 32 ............................ AGATGCACAGCGAGTTATACCCGCGAAAGAAC 136567 28 100.0 32 ............................ ATCAAACGAGTGGGCAAAATGCTCCTGCTTTA 136627 28 100.0 32 ............................ ATAAAGCACTCTGCCTATCACCGGATCACCTT 136687 28 100.0 32 ............................ TCCAAGGAAGAACAAAAATCAAGGAATGGCTG 136747 28 100.0 32 ............................ AGCGTGGGACTGCGTGCGGGTTATGTCGAATC 136807 28 100.0 32 ............................ ATGTGCGAGGTTCGCATTCTCCAACCAATGCA 136867 28 96.4 33 ...........T................ TTGAGGAATGAGGATCTTCAACTCACGCATAAT 136928 28 96.4 32 ...........T................ AGCCCGCCGGAGGGGTGCCGTGCTTTTCGTGC 136988 28 96.4 32 ...........T................ CGCATACCAGAGAATGTCTTGAGGGGCGTTTT 137048 28 96.4 32 ...........T................ ATCATCAAGCGAAGAAGCAGAGACAATAGCTC 137108 28 96.4 32 ...........T................ TAGAAGACAACACTGGCGCTGGTGGTAGTTTA 137168 28 96.4 32 ...........T................ TGAGCCAACCAAAGCAGCGCTTTACTCTTTTA 137228 28 96.4 32 ...........T................ AGCCTTCGAAGCGGCACCAAATGTCGCTATCG 137288 28 96.4 32 ...........T................ AGTCTTCTACTGAACCATCGGCATTAATCCCC 137348 28 96.4 32 ...........T................ ACACAGCGGCCACCGTGCTCAGTAATAAAGCC 137408 28 96.4 32 ...........T................ AGATAGAGAATCAAGCGCTTTGTGTTGTCGCG 137468 28 96.4 32 ...........T................ ATTCCACTGTCCAAAGCGCTAGGCCAAGTTCA 137528 28 96.4 32 ...........T................ ATTAGATACCACACCAGCTACGACCTTCTCGA 137588 28 96.4 32 ...........T................ AATCAAAAAAGCTTCCTTGGGCGCTTTCTTTC 137648 28 96.4 32 ...........T................ AAGCTCACAAACGACCAGAAGCGTTTTTTTGC 137708 28 96.4 32 ...........T................ GTAGAGTCAGAAGTGATCCAGCGCGTCTACCC 137768 28 96.4 32 ...........T................ ATAAAATTGCGGGATATGATGATTACATATTG 137828 28 96.4 33 ...........T................ ATCGCCGGTTTTCACGGCCCGCTTCATCACTCC 137889 28 96.4 32 ...........T................ TTTAAGCAAAATTCAGGATATGGGCGGATTTT 137949 28 96.4 32 ...........T................ GTAGACCAAATCCCTAACTTTATTTCCTCGCC 138009 28 96.4 32 ...........T................ GCCATTGTTGGGTGTTCGATACTGATCGGCAA 138069 28 96.4 32 ...........T................ TTTGTTGTGTGCTATCGCAATGATCATAATAA 138129 28 96.4 32 ...........T................ AGCAAGAAGCAACAGAAAAACAAATAAAATGA 138189 28 96.4 33 ...........T................ TGAAGAGAATGAAAACGGCATTTATGCTTGTGT 138250 28 96.4 32 ...........T................ TGTAATGAGGTGCTGAACGTGGGCGATTGCTT 138310 28 100.0 32 ............................ ACAAGACCTGGACAAGTCCGAGCTGAGCCAGA 138370 28 96.4 32 .........A.................. AAATCAGGAAAATGAGCAAAATCGACCAGAAA 138430 28 100.0 32 ............................ AAGCAGCATACCGAGCAGCAGACCGAGCAGCA 138490 28 89.3 0 ...........T.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 74 28 98.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTGACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGCACTATGGGCTGCAAAATCCGGCAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCTGCGAACCCCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTCAGATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGCTTGAGTAGCAAAGCGAATGGACAGTCAATATCGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAATTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTGTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGAAGATTTTTATCCTAACATCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAGATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATTCTTTTAAAATCATAAAGTAATGAGCTATTGGATTACATCAGTTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCTCGCTCCACCAGCACATCATTGGTTTTCTACGTTCGAGATAATCCGTGCGGTTATAGGCACTTCGAACTTGGTTATCATCAACGTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //