Array 1 42988-46559 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXHC01000016.1 Moraxella catarrhalis strain Z7542 Z7542_ctg-5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 42988 28 100.0 32 ............................ ACAGCCTGAACCGCCAAGAATGGAAAGTTTGA 43048 28 100.0 32 ............................ AAATTGCCCATTTTTTTGCTCTCAAAAAATAA 43108 28 100.0 32 ............................ AGGAAGTTTCAACAGTACTCAAGGCAACATGA 43168 28 100.0 32 ............................ AAGCGATTGATGCGCTATAGCTATTGCCCTCG 43228 28 100.0 32 ............................ AACCCAACGCCAAAAAGTGATTGGATTGGGTG 43288 28 100.0 32 ............................ TAAAGACATCTCAATCCAATTACTTAGACATA 43348 28 100.0 32 ............................ GAGCGGGGCGGGTGCGTGAAAGCTGAAACCAA 43408 28 100.0 33 ............................ CGATTTATGCGATCACAAATCAAGAAAGTTTTA 43469 28 100.0 32 ............................ ACACGGGAAAATTCCTGTCTCTCGATCAATCT 43529 28 100.0 32 ............................ TGCGACATCATCCAAAATTCAAGACACCCTAC 43589 28 100.0 32 ............................ CAATGAATCTAAATCAGTTGCCATTACAACTC 43649 28 100.0 32 ............................ TAACGCTTTCCAATGAAAACCCATCACTTGAC 43709 28 100.0 32 ............................ TTTAAGTTTTCTTTGGGTGAATAATAAAGTGT 43769 28 100.0 32 ............................ TGATAACGCCCTAGCCTTATGCTACAACTGCC 43829 28 100.0 32 ............................ AGCAGTTACCAGCTGTCAATGAGAAGTACCCT 43889 28 100.0 32 ............................ AAACCAATAGTAAAGTACAAGTTAATACTAAT 43949 28 100.0 33 ............................ CACGGTTTAGCCGTTCAAGATTGCCAACGCCGA 44010 28 100.0 32 ............................ TGAAACACGCTCACAAACGCCACAGCGTGAAA 44070 28 100.0 32 ............................ AATCAAACTGATCTCGCTGCTGAAACTCAAGC 44130 28 100.0 32 ............................ TGTCAGTAAATCTTTTGGTAATGTATGGTGTT 44190 28 100.0 32 ............................ TAGCAATTTAAGATAAAATCGTTTATTATTAC 44250 28 100.0 32 ............................ CAGATAACTTCCCCATCATCATTGCCAAATTG 44310 28 100.0 32 ............................ AGACCTAAGTGCTGCAGATGTTCTACGATGTC 44370 28 100.0 32 ............................ AAGAAAGCTCACTAAAGACAGCTTAAAGCGCG 44430 28 100.0 32 ............................ AGCTCTGTTTTTAGCGCATAACGCTCTAATTC 44490 28 96.4 32 .............C.............. TAATTATGAAAACAGCGAACCCCAATTGGGTA 44550 28 96.4 32 .............C.............. AAAATGCACACTCGCACGGATTGATGACCGAA 44610 28 96.4 32 .............C.............. AGACGTTAAGCGTACTGATGAACACATTCCTG 44670 28 96.4 32 .............C.............. TGTACCTGCTGCACCTGATAACACAATGATGC 44730 28 96.4 32 .............C.............. ATGAAAAAACAATATCCCCAAGTAGCTGAAGC 44790 28 96.4 31 .............C.............. AAAAAGATGGTAGAATCAGTTATTGGCTTGA 44849 28 96.4 32 .............C.............. ACTGACACTGACTTGCATACCTTTTTTAGCTA 44909 28 96.4 32 .............C.............. GCTCGCCAGTCAGCCACTAGAGATTTTACGCA 44969 28 96.4 32 .............C.............. GTCTAGAAAGCGTATGCAATGACCTTTGGGGA 45029 28 96.4 32 .............C.............. CTAAATTATTGCATAAATCATTAGCAGGTTAT 45089 28 96.4 32 .............C.............. TTATACAGATGACGAGGGCAATAGCTATAGCG 45149 28 96.4 33 .............C.............. CACATCCATCCGTCAATTTTTTTCTTAGTGATA 45210 28 96.4 32 .............C.............. TGTGTAAGGTTCAGAAATGATGGGAAACCAGT 45270 28 96.4 32 .............C.............. AGATAAGCTCTATCTGTCTGTAAGCTAAATAT 45330 28 96.4 32 .............C.............. TAAACCAAGACAACCAGTAATCTGGGTAATCT 45390 28 96.4 32 .............C.............. GTCAAGACCTGCGCTAAATGATACCGTTTCGG 45450 28 96.4 33 .............C.............. AATTTAATGCCCAATTGGCATATTCTTGATTGC 45511 28 96.4 32 .............C.............. ATCTAGCTCACGGGTGCAATACATGACATGAG 45571 28 96.4 32 .............C.............. GTCTAAAAAGCGTATGCAATGACCCTTGGGGA 45631 28 100.0 32 ............................ ATCAAAAGCAATACCGTTAATTAGTCTTGGTG 45691 28 100.0 32 ............................ TGCTCAACGCTCTAATCCAAAAAATCAAAAAT 45751 28 100.0 32 ............................ TGGCACTGCACCAGTCGTAAAGTCTGATAGCG 45811 28 100.0 33 ............................ GTAGCCAGTACCATTACCAGCCGCCCACTGTAC 45872 28 96.4 32 ..........A................. AACAAATGCTGTAAAGCCAGTGACCAATGCTG 45932 28 100.0 32 ............................ AATTTCTCATATCTACTTGGTTCGCCAAATCA 45992 28 100.0 32 ............................ ACTAAAAAAGCCGTCATCTTTAACGATTGACG 46052 28 96.4 32 .............C.............. AAAGGCTCGTGAAGCCCACGCACTCATCAAAG 46112 28 96.4 32 .............C.............. TCTTTTCATATGCTTTGCAAATATTATCCAGT 46172 28 96.4 32 .............C.............. AAGCTTTTGAGCCTAAAAATTCAGATAAGCAC 46232 28 96.4 32 .............C.............. CATGAGATTACAGGCCAAGACTTAACACAATG 46292 28 96.4 32 .............C.............. ATCAAATCCATGCTTAGTTTCACCGTTTAAAT 46352 28 96.4 32 .............C.............. ATGTCTTTTTGTGTTAGCCATGTAATTTGTTT 46412 28 96.4 32 .............C.............. TGATGGGTGCGAGTGTGTGCTGTGAGTGCAAC 46472 28 96.4 32 .............C.............. ACAAAAAATCAAAGAGCGTGATGAAAACACTA 46532 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 60 28 98.3 32 CTTCACGACCGCATAGGTCGCTTAGAAA # Left flank : TCGCATTGCGGCTTGGGTGATGGATGTCCCTGTGCCAAGTAAGATGACTGTGGTATTGGCGATGGGGATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTGAGATACAGGATGCGCCCGTCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATACATTGGCGCGCTTGGAGTGCAAAATTGCCTTAAGATCCGTGGGTTTGAGCGTATCCATGACGTCAATTTCCTTAATGATGAATTTAATTTAATCACACCCATTATAGCCTGTCAAGCGATGATGCGACCAAATTATAAGCTTATATTATCCATCTGCCATATCAGTTATGCTATACTAAATTTGCCATCAGATGATGATGGGTGTAAAAAACCTTTATTTTTTCACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACTAGTCAACTTTTGATTGGATAAAAAGGGTCAATCCATCATAAATGGCTGTTATTTCTTAATTTTTTCGGTTATAATTACT # Right flank : AATTTAATGGACAAACCAAAACTAATTCAACAATAGATCAGAACATGACCGAAAACAGGACAGAAAAAGGTATTGGTAGAAATATTATGCTAGTATCTTCTGGGAGTTCTGAGATGTCAGGCGCAGTAGAAGTTGGAAAGAGTCAAGAAATTAACACTAATACAGGTTGGACTACCAGTATATCTTTAGATCATGTTGGCAAATTAGATCATGCCATTATGAAATTTAGAATGAAGCAGCCCGAGGAGTATGACAAAGCATATCAAGAAGCAGCTAAAAATTTAGGTATAGACCCGCAACAAGATTATTTGCAATTAGAAAGTACGGATAGGCTGAATATGCGAGATACTTTAAATCCAATCGCTATGCAGAAAAACCAAACATATCTCGGACAATCCAAACCTACAAATGGACTGCCGCAGAACATCGGTGATGTGGCGGCAAAACATTTAAAAAATAATAATGAAATAAAGATGCACTATCAAGACGCTATACAGGAT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCATAGGTCGCTTAGAAA # Alternate repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //