Array 1 1609-651 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRKA01000019.1 Phocaeicola vulgatus strain AM16-6 AM16-6.Scaf19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1608 33 100.0 32 ................................. TTCTGTGGTATTATATAACCAACGTCCATTGC 1543 33 97.0 33 ................................C TTGATGCGTATGGTCAATGATGCCGAAGAACAT 1477 33 97.0 34 ................................T TTGCGTTTGCCAATGGTATATACCATGAGCAGGA 1410 33 100.0 34 ................................. TTATAGGGATTATAGATTGGTGGACGTCAGATTT 1343 33 97.0 34 ................................T CAACAGGTATGTCCTTATAAAGCAGGTTACTGAT 1276 33 97.0 32 ................................C CTTTATCAATGTCACGGCAATAACCGGCAATA 1211 33 100.0 32 ................................. GTATCTCCCTACAGTACGGACTTGGAGGGATG 1146 33 100.0 32 ................................. CGATCTACTTTGTTAGCATTTTTAACTTCTTC 1081 33 97.0 32 ................................T CATAACTATAATATTGATGTTACATCGTCTAT 1016 33 97.0 33 ................................C AAATCATAGGCATTGCTTAATGTCCAAAGTATA 950 33 100.0 33 ................................. GATTTTGTCAGTGTAAAGTAAGCGGTAATGGCA 884 33 97.0 33 ................................T TGTATCAATTGGTCCCCTACATATTTCCGCAAA 818 33 97.0 35 ................................T TGGTTTGTAGGCATGGGAAATAATTTGTTTTTTAA 750 33 100.0 32 ................................. TCGAATAGCGTCCAAACGGGGTGGCCGATTTC 685 33 93.9 0 ....................A.........G.. | TA [662] ========== ====== ====== ====== ================================= =================================== ================== 15 33 98.0 33 GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCTTGTCTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTCTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTGGAAGTAATAGGTGTTGAAACGGCGTATAAACTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAAAGTATTTCTTCGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAATTTGCTGATTTATAATATGTTATTAGATATAGG # Right flank : TTGTTCACTCGTTGGTCAAGTTTATGGAAGAATTGTAAGCATTCGGCCTCTTGTGTATTTCTCTTCAAGCTGTTATAAAGTCAAAAGCCAAACGAAGTACGTTAGGCTTTTGACTTTGTTATGACTGGAAAAAACACGCACAATCCCGGATGCTTATCTTTTGTCTGTCTTCTTTTGTGGTTTCACCTAGGTGACAATACATTGGCATCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGCTTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGTGTTCCAAAGCAAATATATTATATTTTTACTATACTATCCCTTGTTGTTTATTTGTTATATTGTTGGTTATTAATGTGCTATTATCTGCTTGTATCGATTGTTTTTTCTTGTCTTTATAAGATATATTAAAACATAAACTAACATGAAAATTGGTATAATTGACCTTTGTAAACAAATAGAAGATCCTAGTATGAACCGCAAGAAAGTCCATAAAATGGAA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //